BGIOSGA006759

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Revision as of 02:45, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA006759| Description = Spermidine synthase 3| Definition = Oryza sativa Indica Group BGIOSGA006759, complete gene.| tag = OSJNBA0052K15.8-1|...")
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Gene Name

BGIOSGA006759

Description

Spermidine synthase 3

Definition

Oryza sativa Indica Group BGIOSGA006759, complete gene.

LocusTag

OSJNBA0052K15.8-1

Ensembl Transcript ID

BGIOSGA006759-TA

Ensembl Protein ID

BGIOSGA006759-PA

Length

3596

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:9697100..9700695

Sequence Coding Region

9700476..9700695,9700326..9700370),complement(9699993..9700069,9699765..9699887),complement(9699503..9699607
,9699350..9699422),complement(9699157..9699228,9698669..9698864),complement(9698097..9698226
,9697721..9697795),complement(9697100..9697177

Genome Context

<gbrowseImage1> name=IndicaChromosome02:9697100..9700695 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:9697100..9700695 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGGGTGGAGGCGCAAGAAATGGCTCGACGACCGGGGCGGCGCGGACAGGGGGGAGTGGGGGTGATGCTGCTGGTGGTGGTGGTGGTGGCTCCGCCGGGAACGGGAAGCCGCTGCCCCCTTGCTGCGTCAAGGCCAGGGCGGCGGCGCCTGAATCCGAGGCCAAGTGCCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAGGAGAGGCCCATTCACTGAAAGTTGAGAAGATCTTGTATCAGGGGAAGTCACCATACCAAGAAGTTTTAGTTTTTGAGTCCTCAACCTATGGAAAAGTTCTTGTCCTTGATGGTATTGTCCAGTTGACTGATAAGGATGAATGTGCGTACCAGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGACATGGTTCTGTGGAGTCAATTGATATATGTGAAATTGATCAGCTAGTTATTGATGTTTGTAAAGATTTCTTCCCAGATTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGCTTTGAGGCCTGGTGGTGTTCTTTGTAATCAGGCTGAGAGCATGTGGTTGCATACGCATCTTATCCAGGACATGCTTTCGATCTGCCGTGAGACATTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCGAACAGTGAAATTCTTACTGCTTCCTAG</cdnaseq>

Protein Sequence

<aaseq>MEGGGARNGSTTGAARTGGSGGDAAGGGGGGSAGNGKPLPPCCVKARAAAPESEAKCHATVVSGWFTEPRSRGGKTSKVQYYNNPMWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGKVLVLDGIVQLTDKDECAYQEMITHLPLCSIPSPKKVLVIGGGDGGVLREICRHGSVESIDICEIDQLVIDVCKDFFPDLSVGFKDPRVRLHVGDAVEFLRNAPEGTYDAIIVDSSDPIGPAQELVEKPFFDTIARALRPGGVLCNQAESMWLHTHLIQDMLSICRETFKGSVHYAWTSVPTYPSGVIGFLLCAKEGPPVNFLTPANPIEKLEGAMEAGRDIRFYNSEMHRAAFVLPTFARRELEAYCTTVEREQQEETTAEPLKMNIMPNSEILTAS</aaseq>

Gene Sequence

<dnaseqindica>1..220#326..370#627..703#809..931#1089..1193#1274..1346#1468..1539#1832..2027#2470..2599#2901..2975#3519..3596#ATGGAGGGTGGAGGCGCAAGAAATGGCTCGACGACCGGGGCGGCGCGGACAGGGGGGAGTGGGGGTGATGCTGCTGGTGGTGGTGGTGGTGGCTCCGCCGGGAACGGGAAGCCGCTGCCCCCTTGCTGCGTCAAGGCCAGGGCGGCGGCGCCTGAATCCGAGGCCAAGTGCCACGCCACCGTGGTGTCCGGATGGTTCACCGAGCCCCGCTCGCGCGGCGGTATGTGACGTTGTTGTTTCTTGATTCTTGATGATGACGATAGATGCTTTATGCCCTATTTTGGATGATGATGATGTTCGTTTGTCTGAATTTTGGTTTGTGCAGGTAAAACGAGCAAAGTGCAGTATTACAATAACCCGATGTGGCCAGGTATTTTTCACATGTTGTTATGTTCATAAATACTATTCTTATAGATACATGGTTTATTGTGTGTTAGCAAATTAAAAAAATTACTAGACTTCACTTGTTCTGTCTGGATACTTTTGTTTACCCCCAGTTTTTTTGTTTTTGTAATTTTCCTCTAAATCTTTTTTTCATCTGTTGTTCTGTTGCCATCTCACTGTTAGATATAATCCAACAATTCCAATTAATCCTCACAGCTCTCATGATTTATTTTTGTACACAGGAGAGGCCCATTCACTGAAAGTTGAGAAGATCTTGTATCAGGGGAAGTCACCATACCAAGAAGTTTTAGTTTTTGAGGTTCTCAACTTCTCATCACCTATTGACAGCCAAAATAAAAAAAAATCTAGTATTTATTATACTTTGTATTACAGTGTTGTGTGACCTGTTTTTTTTTTTATGCAGTCCTCAACCTATGGAAAAGTTCTTGTCCTTGATGGTATTGTCCAGTTGACTGATAAGGATGAATGTGCGTACCAGGAAATGATTACTCACCTTCCGCTTTGCTCAATTCCATCCCCAAAGAAAGTAAGGACTCCATTTATTTTTTTTCCATTAGAGGTGAAATTAACACTTTTGACAGACTCGAAATTGATTGTCTTAAATTATTTTCTTCCTTTTATCCTTACTTCTATAGAAAATTTTAGTTTGGTCACTAATGTTCTTTGGACCTACCAAATTGCAGGTTTTGGTTATTGGAGGTGGTGATGGTGGAGTCCTTCGGGAGATATGTAGACATGGTTCTGTGGAGTCAATTGATATATGTGAAATTGATCAGCTAGTTATTGATGTAACAATTCTCCTTTGATATTTGAATAAATATATGTCATTGCACAACAAACTTTCCTGATATGCATCTTAATTATGTAGGTTTGTAAAGATTTCTTCCCAGATTTATCTGTTGGATTCAAAGATCCTCGTGTTCGGCTTCATGTTGGTGATGGTACGTTCACAATCAATATTACCTGTTTATAACTGTGAAAAAAATATATCCTATTTGCAATTTAGATGCACCTTTCAATTCTTTGGTTTGTAATTTTCATAACTGTCCTATTTTATTTCAGCTGTGGAGTTCTTAAGGAATGCTCCTGAAGGGACATATGATGCTATTATTGTCGATTCATCAGACCCGATTGGTGAGCTCATGCTGCTGTACCGTTACTTTTTTTTATTATAAAGCCTCAAAAACAATGGCTATTTATCTTTGTCGCTGAATGTCAGCTCGCTAGAATATTGTTCTTTTTTTTACTTCCCATGAAATTATTCCTGATCTCTTTAGTTTTTATAGCTTTTGCTATATCAATAGAAATTCTTATATGAACAAAAAACTGGTCTGATCATGTTTGACTTGAAAATTTCACCTACATTTTGTATTCCCATTTGATGGTAATGTTCTTACACTATCTGTTTTGGCATTATCTGTTGCAGGGCCTGCCCAGGAACTTGTGGAGAAGCCATTTTTTGACACAATCGCAAGAGCTTTGAGGCCTGGTGGTGTTCTTTGTAATCAGGCTGAGAGCATGTGGTTGCATACGCATCTTATCCAGGACATGCTTTCGATCTGCCGTGAGACATTCAAGGGTTCTGTCCACTATGCCTGGACGAGTGTCCCGACATATCCCAGGTTCTTCATTCGTTTCCATTTTCTCCTTCTGTCCATTTTCTGTATGCAAGCCAGGTTTTATGATTAGAAATTCTTTGATATGTTAACATTGCTTTTCTTTTATGCTATTACTGATTTTGGTATATGATGAGTTAAAAATGTCTTAGTTGTCAACCTCATATTGTGTTCTACTCACGTTTATTTGGGTTTGTTCCTAACAGATGATACTGTTATCAGTGAACTGGCGGTACCACTGTTTCAGTTAGACAACGAACTGGTTAGACAGTTGGTTGCGATTCTTTTTATTGTGTATTAAGCTCATTGCTCCACTGTTTTAATATGGTGAAAGTGAAGCATTAAGCTGCATAAATCGCCTAGATGATGTTTTTCAAGTGGTAATTACTGGCTTGCCGCAATGTTTGGAGTTCACTTTTAACATACATTTATTCCTTTGCATTTGCAGTGGTGTGATTGGGTTTCTGCTATGTGCCAAAGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGGTTTGTTCTCTCTAAAGAATTACCTAGGAATCTTCAATTTCTATATCTTGTTTCAGTTTGTCTTATTTTTTTGGTCATGGTGTGCGGACTGTATTCCCAATAAAATTAATAAGGAATTTTACTTCTGAATTACATTTATCTGCTATGATTAACTTTGTCTTGTGTCATGGGAGTACTTCTATACGGCCGCCTTTCCTATTTTTTGAATGAACTGCTACCTAGTTGTTTGATCTTTAGTATTATTAGTCCTTATCCTATCAACACTTAAGCACACTCATTAATGATTTTTGCTGCTGATCAGATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAGGCGTATTGTACTACCGTTGAAAGGGTAAATTACTTCAAATCCTGGTAACTTGTAAAGCCACATTTATTTTCTTTTATAATCAATTTTGCTGTGATGGCCATCACTTGCCACCCGAACTCAGAGCCGTTAACTGTAGTCATGATGAATATGCATTCAGAATTGTTTTCCAGACTGTTCCTTACCTTTTTTGTTAGAAAGTTTATAACCTTCTTTTAAAACATCCAGACTGTTCCTTACTGTTGCAGAATCTATTCTGTTTAGGTTGGATTTCATATAATATAGGCAAAATAGTTGTTGGTCTATATTCTGTGGAAGATAGGAGATTAAAATTTACTAATGTACTGATGTTAGAGTCACCATGAAGTTGTGCTTCTAGTGTCGAAAAAATCCGAGTCACCATGATTTTTTCCCTCAAATGTCAAATCAAACATACTCTTCTTCCTGTGATACAATATCGCTAGAAACATTAAAAATCGTTTAATCATCCAACTTTATTGTACCATATCTAGCTGATTGTTCCTCCGGGCAAAACCCAACTCACCCAAGAACGTTTGCTTACCATTACAGGAACAACAAGAAGAAACAACGGCCGAGCCTCTGAAGATGAACATTATGCCGAACAGTGAAATTCTTACTGCTTCCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA006759

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA006759&oldid=60311"