Os12g0563500

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Revision as of 10:33, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0563500| Description = Peptidase M24 family protein| Version = NM_001073569.1 GI:115489099 GeneID:4352534| Length = 5333 bp| Definition = ...")
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Gene Name

Os12g0563500

Description

Peptidase M24 family protein

Version

NM_001073569.1 GI:115489099 GeneID:4352534

Length

5333 bp

Definition

Oryza sativa Japonica Group Os12g0563500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:23309847..23315179

Sequence Coding Region

23309918..23309965,23310939..23311043,23311881..23312144,23312223..23312315,23312445..23312651
,23313219..23313322,23313500..23313566,23313640..23313747,23313829..23313921
,23314007..23314097,23314187..23314257,23314485..23314613,23314723..23314830

Expression

GEO Profiles:Os12g0563500

Genome Context

<gbrowseImage1> name=NC_008405:23309847..23315179 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:23309847..23315179 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacggcggtgcggctcctgcgaaggagcctgcgagggggcgaggcagcacctcggttcttatccgcttctcaaaatttggtacgactagttgcaaacaacaccagatcagttgatgttggccaaccaacaccccgatctcatcctgagttattagctgaaggagagattacaccaggtatcactagcgatgagtacatcttcagaagaaaaaagcttttggaggttctgccagagaagagcttggccattattgcgtccgcagagcagcagatgatgactgatgtagtgccatactcattcagacagaatggtgattacctgtatattacaggttgtgcacaacctggtggtgtggcagttttaagtgaggaaactggtctgtgtatgttcatgccagatacaagtaaggaggatgtggtctggcaaggtcagacagctggagttgaggcagctgagaatttcttcaaagcggacaaagcatttccacttagtgagatgcaaaagatccttcctgaaatgattgagcggtcaaaagtggtatatcacaatgtaaagacactttcgccatcttataagaacttggattcctttcgtagggcatcactcaataataaagtaaaagatattgcatactacactgatgaactgcggtggatcaagtcaaaatcagaaattgggttgatgcgagaatcagcatctattgtttctcagtctcttttacaaacgatgttgctatctaggacccatagggaggaaagccaactggcagctaagatcgagtatgagtgcaaaatgaggggtgcccaaagaatggcgttccatcctgtagttggtggtggagcaaatggcagtgtaatacactactcaagaaatgacggaagggtcaaagcaggtgaactactgctcatggatgttggctgtgagtatcatggctaccttagcgacctgactcgaacatggccaccctgtggcaggttttcacctgctcaggaagaactatacagcctgatactggagacaaataaggaatgcataaagctttgtaaaccaggcgcaagcattaacgagatacataatcattcggtcaagatgttgataaagggtttccaagaacttggaattttagagaaggggaaatccatccaatacaattatttgaatccaacagcaataggtcactcgttaggaatggatattcatgattccgtcaagcttagcaaggacaaacccttggagccaggagttataataacgatcgagcccggggtttacatcccaccggtgccaatactgaaagagaacgccccagataggtaccggggcatcggaattaggatcgaggacgaggtcctcatcaccgagtctggtcacgaggtcctgacggcgtcggtgccgaaggagatctctcacataaccacccttatgaacatgggtagtaactccatgatggatgcccatgagctgagggctgcctgcagttga</cdnaseq>

Protein Sequence

<aaseq>MATAVRLLRRSLRGGEAAPRFLSASQNLVRLVANNTRSVDVGQP TPRSHPELLAEGEITPGITSDEYIFRRKKLLEVLPEKSLAIIASAEQQMMTDVVPYSF RQNGDYLYITGCAQPGGVAVLSEETGLCMFMPDTSKEDVVWQGQTAGVEAAENFFKAD KAFPLSEMQKILPEMIERSKVVYHNVKTLSPSYKNLDSFRRASLNNKVKDIAYYTDEL RWIKSKSEIGLMRESASIVSQSLLQTMLLSRTHREESQLAAKIEYECKMRGAQRMAFH PVVGGGANGSVIHYSRNDGRVKAGELLLMDVGCEYHGYLSDLTRTWPPCGRFSPAQEE LYSLILETNKECIKLCKPGASINEIHNHSVKMLIKGFQELGILEKGKSIQYNYLNPTA IGHSLGMDIHDSVKLSKDKPLEPGVIITIEPGVYIPPVPILKENAPDRYRGIGIRIED EVLITESGHEVLTASVPKEISHITTLMNMGSNSMMDAHELRAACS</aaseq>

Gene Sequence

<dnaseqindica>72..119#1093..1197#2035..2298#2377..2469#2599..2805#3373..3476#3654..3720#3794..3901#3983..4075#4161..4251#4341..4411#4639..4767#4877..4984#aataacaagaaaaaaaaaccagcatagcaaagcaagggtttagggcggcggcggcggattccgcggcggccatggcgacggcggtgcggctcctgcgaaggagcctgcgagggggcgaggtactcactccacccctcccaatcgaattctacttcctctcaacttttttttgttgttgctgggggatttcgtctgggctgctcccccagtttatatcgatttttcttttacttgttcttgctgtgatttaggttttttttttccattctagggttttggagtggcgcctcctttacgcgacgatttattttttgtgcgagcttttcttgactatttatgcgtgtgtttgtgtgtgttttgtgcgagcttttcttgactcagtgcggttgatgctttttttttttttaaaaaaagaaaaactttggcgcgagcttctcttgaccctgtgcgggtggttgaggaagcatcagcttaaagatgcagtctcggagctcagttcgttcgatttcatccttgatcttcttttcttcgctatggccttctgtccgaattggattgggagtagctcacctagtgctggagtctgggtaggtgatgtaatttcagtttgttagtgtgggtttgtagtactctttatttcaatggaattgttcaaaatgttatgcttgctattgcattctcgattattagctagtaagatagatgcctagatgtacatgtagcttgattggtgttgacttcttttcagacttttgatgattggtaagtaggagtaatggtattgtcctagagatgataaatattgaggtgcttgctttaggcttcagttgagtgagttgttggtgcgagatccactgtaccatgtcaaattgtcaaaaatgcttcgagatttggtaattggtgaactttagatggattgcatgtctcatccaccccttgtcagtaagtagtggcattggcagctgaattaaaaagacaacaaaatactttgatttgatatcattgattagttcgtaggcatgaacaaaataattatgtttttttgtacaacgttcaaatgtgttttatgctttgtcggaattttgaacgcaggcagcacctcggttcttatccgcttctcaaaatttggtacgactagttgcaaacaacaccagatcagttgatgttggccaaccaacaccccgatctcatcctgaggtacttccttgttggtaacataatagcactagctgatggtgtgaaattgcagtcacattataatttataatttctctttttatggccttctgattttccagtgatggtattcaaacatttgctagcctatttggtttctggctaacttcaggatacaaaaattaaaagtaccgctgtaacaatgttaagtaactcctgggccaatggggatagggaaatatgtgaaaccccaattgcaacaatgaaccaaagcagtgatctaagaaacttttgcaagatcaatgttttgggtggcatggctaagcaaactgaacctgcctatttgccaattcggtgtcttttctgatatgtgggtgatacaattcattgggcaggcttattacctatgagagtgctcaaattacgaaaatttgatttttcgtaagagagtttctttataatcactatgcacaataatatagaatatgtgcaatttttattttcagtcagataaagcttggccttgattatagatcttagccaataagttctatttactgagaaattaaagttgtgggaatttgtccttttggattataattctatagatgcttataagctgggttaacctattcaagttttgcaattctttagtaagcctcaataaactgcctagaagcaagtcttaataggcaaaacaaggcttctacttgttaccttcccagttccaacaaacaaaacaatatctaatatgttattttcattacttttatacttttattagtgtgcttgtaaaagaatcaaagataagtctacttaagagttattattttataatgctgcaacaatatgaaccagttattagctgaaggagagattacaccaggtatcactagcgatgagtacatcttcagaagaaaaaagcttttggaggttctgccagagaagagcttggccattattgcgtccgcagagcagcagatgatgactgatgtagtgccatactcattcagacagaatggtgattacctgtatattacaggttgtgcacaacctggtggtgtggcagttttaagtgaggaaactggtctgtgtatgttcatgccagatacaagtaaggaggtaatgatgaggtcttatttccttagtaccatttctacttaagctgcataattcttagaaattgtaatattgtgctaggatgtggtctggcaaggtcagacagctggagttgaggcagctgagaatttcttcaaagcggacaaagcatttccacttagtgagatgcaaaaggtaaccttatttaccccccaccccaaaatcccccattacttttgagcactagctattacctcctaatgaccttcctctagtggtactgctttatgacgcgccattgacataactaccattaaaatgcagatccttcctgaaatgattgagcggtcaaaagtggtatatcacaatgtaaagacactttcgccatcttataagaacttggattcctttcgtagggcatcactcaataataaagtaaaagatattgcatactacactgatgaactgcggtggatcaagtcaaaatcagaaattgggttgatgcgagaatcagcatctattgtttctcaggtatttggttaaacttctattttgttcttctcgcattgttaggaggtgatggccttacttcatcagtccagccttggatagaaaaaaaacaataaagtgagtttgatatctcatctaagagaatagcgctgctggttgtggaagttgggtcttgatgtcgctacaagattgctggtacagaactatataggcacatgctgtactcttagccaatgagataattaactgatgatttgatatgcgtagagtactaacatgtaaggacatacaatttgtccatgattgtgcatgacaccatcttgcacttattcccctgcccctctggataggcatggccccatttattcctcacataatatgcccacaccattatttggtattccaactagaccaccttaaaaacaggtgtgttgatatattgcatttagagtttctagttcaagctgacagtatgcaatacagaagctgcagaataagacgaaacaactaaatttgcaagcgacttactctctcactgacccattgtaattgttctatgtgctgacatcatattcactacctggacagtctcttttacaaacgatgttgctatctaggacccatagggaggaaagccaactggcagctaagatcgagtatgagtgcaaaatgaggggtgcccaaagaatggcgtaagcattttgtacttccctgtataatactgtatggtatcacatatactgccgtactagtagcatgattctatgtccattcactttgttaattaatagatattgagttaatatgcatgggaaatatgaggtccatgctcagatgatttacctttcctttttattgccgtaccttaggttccatcctgtagttggtggtggagcaaatggcagtgtaatacactactcaagaaatgacggaagggtaaacagacttttctcttgtcgcacatgtcagagctatctttcttgtgaagttatttttagctatttgacaggtcaaagcaggtgaactactgctcatggatgttggctgtgagtatcatggctaccttagcgacctgactcgaacatggccaccctgtggcaggttttcacctgctcaggtaaatgctagatctgtatacaagttaagaagttttatttttgttacttcttctaactccgagtcctcaccttgaccacaggaagaactatacagcctgatactggagacaaataaggaatgcataaagctttgtaaaccaggcgcaagcattaacgagatacataatcattcggtattatcaacattactcattgtagatacaaatttttatttcacaaaaactcaaaagatccaaatctcaaatcttccatttgcaggtcaagatgttgataaagggtttccaagaacttggaattttagagaaggggaaatccatccaatacaattatttgaatccaacagcaataggttcatacactctgtccattaagatttctccttgaatgcaagggattgggccctggggaccaacttaactctgtcttgctgtctcccaggtcactcgttaggaatggatattcatgattccgtcaagcttagcaaggacaaacccttggagccaggagttgtgagtagatgattcattcatttctgtctagttatttaattatttttaagcttcttaatgatcgttgtatgcatgcatctggataaaacacccaactaacctccaacaacaattttcataagaactgtattttaccaaatatatttcatggcttaaataaaccaagccatcaacttttcacatcagctcaatctcaaatgctgacatgagatcctgtatgcgcgcagataataacgatcgagcccggggtttacatcccaccggtgccaatactgaaagagaacgccccagataggtaccggggcatcggaattaggatcgaggacgaggtcctcatcaccgagtctggtcacgaggtactctcttccctccaatcatctatagtacagcttggaccttggattggtaaatgctgctgtcaggtattgaaattgaaagatcatcatcctggggttggccttgcaggtcctgacggcgtcggtgccgaaggagatctctcacataaccacccttatgaacatgggtagtaactccatgatggatgcccatgagctgagggctgcctgcagttgagaagttcagacaatgctgtcctgatgcatcatccctcttccctccagcgatcttcgcatccaaattccaattgacattcattcttcgttaaagctgagagatgaatcgggattatgaaggctcaagtggggttatggtttttgagaaacccgaaccaccctgatcgtctcagggctgtacgggtttttcgctggttttcacgagaaaaaccagctgttttcagtgtttgcaattttttttagctttgttaaggactgaaatttgtaacatactacctcagattatgtacaaattcagatggtgacagaaacaaaagcacgaaattagggtcacaagaagcccctgaaag</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0563500, RefSeq:Os12g0563500