Os12g0566000

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Revision as of 10:34, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0566000| Description = HCO3- transporter, eukaryote family protein| Version = NM_001073581.1 GI:115489123 GeneID:4352546| Length = 4478 bp|...")
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Gene Name

Os12g0566000

Description

HCO3- transporter, eukaryote family protein

Version

NM_001073581.1 GI:115489123 GeneID:4352546

Length

4478 bp

Definition

Oryza sativa Japonica Group Os12g0566000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:23452534..23457011

Sequence Coding Region

23452857..23452960,23453154..23453236,23453367..23453559,23453682..23453820,23454338..23454503
,23454655..23454821,23454921..23455094,23455184..23455279,23455352..23455489
,23455589..23455908,23455988..23456252,23456396..23456686

Expression

GEO Profiles:Os12g0566000

Genome Context

<gbrowseImage1> name=NC_008405:23452534..23457011 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:23452534..23457011 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggagagcttcgtgcccctccgtggcatcaagaacgacctccatgggaggctccagtgctacaagcaggattggaccggaggattccgcgccggtatcaggatccttgcgccgaccacctacatattcttcgcttcggccataccggtgatatcgttcggagagcaattggagaggaacactgatggtgttctgacagcagttcagacattggcatccactgcactttgtggcataatccactcctttcttggagggcagcctctgctgatcctcggtgtggccgagccgacggtgctcatgtacacattcatgttcaactttgccaaggacaggcctgatcttggaaggaggctgttcctcgcatggaccggttgggtttgtgtctggacagcaattttgctgttcttgctggcgatactaggcgcgtgctcgatcatcaaccggttcacccgcatcgcgggtgagctgtttgggctcctgattgcaatgctcttcatgcagcaggctatcaaggggcttgttgacgagttccgcatccctgagagggagaacagaaaggcattagagtttgtttcatcatggaggttcgccaacggaatgtttgctatcgtcttgtcgtttggccttttgctcactgcactgcggagcaggaaggctcgatcatggcgctatggaacaggttggctccgtggcttcatcgccgactatggtgtcccactgatggtgctagtatggacaggagtttcctacattccatatggtagtgttccaaaaggaattccacggcgccttttcagccccaacccatggtcccctggtgcatatgataattggacagtcatcagggacatgccaaatgtgccactcctctacattattggtgccttcataccagcaacgatgatagccgtcctgtactacttcgatcacagtgttgcttctcagcttgctcagcagaaggagttcaatttgaggaagcccccatctttccattatgatttgcttctcctgggtttcctgacattattgtgtggccttattggtatccctccggcgaatggtgtcattccacagtctccaatgcatacgaagagtttggctactctcaaacatcaactactccgtaaccgactagtagccacagcccgacaaagcatgagccagaatgcgagcttgagccagctgtatggcagcatgcaggaagcttaccagcagatgcagacaccactgatttaccagcaaccgtcagtcaagggattgaatgagctcaaggactcaacagtccaaatggcttcaagcatgggcaacatcgatgcgccagttgatgagacagtctttgacatcgagaaagaaatcgatgacctgctgcctatcgaggtcaaggagcagaggttgagcaacttgctccaggccacaatggttgggggttgtgttgctgctatgccattgctcaagaagatcccgacttctgtcctctggggctacttcgccttcatggccattgagagcttgcctggtaaccagttctgggagaggatcttgctgctcttcactgctcccagcagaagatacaaggtgttagaagagtaccacaccacgtttgtcgagaccgtgccattcaagacgatagccatgttcacactcttccagacaatgtatctactcgtctgcttcgggatcacatggatcccgattgctggggttcttttccccctcatgatcatgctgctggttccagtcaggcagtacatcctcccaaagctcttcaaaggtgcacatctgactgatctggatgcagcagagtatgaggagtcaccagctataccgttcattgccgcgcaagatattgatgttgcattggcgcgcacccagagtgcagaaatccttgatgacattgtcactagaagccgtggtgaaatcaagcgcctgaacagtcctaagatcaccagctccggtggcacaccagtggcagaacttaaaggaatccgcagcccttgtatctctgagagggcatacagcccttgtatcaccgagttgaggcatgaccgcagccctctaggaggaagaggcagcccaaggaccggtgagacccgatcgtccaagttgggcgaaggatcaacaccaaagtga</cdnaseq>

Protein Sequence

<aaseq>MEESFVPLRGIKNDLHGRLQCYKQDWTGGFRAGIRILAPTTYIF FASAIPVISFGEQLERNTDGVLTAVQTLASTALCGIIHSFLGGQPLLILGVAEPTVLM YTFMFNFAKDRPDLGRRLFLAWTGWVCVWTAILLFLLAILGACSIINRFTRIAGELFG LLIAMLFMQQAIKGLVDEFRIPERENRKALEFVSSWRFANGMFAIVLSFGLLLTALRS RKARSWRYGTGWLRGFIADYGVPLMVLVWTGVSYIPYGSVPKGIPRRLFSPNPWSPGA YDNWTVIRDMPNVPLLYIIGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPPSFHY DLLLLGFLTLLCGLIGIPPANGVIPQSPMHTKSLATLKHQLLRNRLVATARQSMSQNA SLSQLYGSMQEAYQQMQTPLIYQQPSVKGLNELKDSTVQMASSMGNIDAPVDETVFDI EKEIDDLLPIEVKEQRLSNLLQATMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPG NQFWERILLLFTAPSRRYKVLEEYHTTFVETVPFKTIAMFTLFQTMYLLVCFGITWIP IAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLDAAEYEESPAIPFIAAQDIDVALAR TQSAEILDDIVTRSRGEIKRLNSPKITSSGGTPVAELKGIRSPCISERAYSPCITELR HDRSPLGGRGSPRTGETRSSKLGEGSTPK</aaseq>

Gene Sequence

<dnaseqindica>324..427#621..703#834..1026#1149..1287#1805..1970#2122..2288#2388..2561#2651..2746#2819..2956#3056..3375#3455..3719#3863..4153#gccctctgagtctctgaaatcctgaagcttcttcttcttcttccttcctcctcttgctctcttgctcttcctatgctagcactctccatgctcttcttgcccttgtagcattggctccttggtttccatccatggatccacgctaaatgcattgcgaggctgcaaattggtagcattcccttccccgttgcatctgctgcaactatgtaagcaggagtgtctgatttgacacgcctgaatacagcttctcagatcttcagttttgttgtttgtctgagaaaaggagagagagagaggcctcttttgggtccaagaagagaaaaatggaggagagcttcgtgcccctccgtggcatcaagaacgacctccatgggaggctccagtgctacaagcaggattggaccggaggattccgcgccggtatcaggtaaataaataaataaataaatcttatcttacattgtgttcttgatgaggagtaggattcctgtccggccatggtcccaagatcttgaaaagttactgtaaaagagggagaatatttttcgttgtttaagcactaggttcttgccccaagatcttgaaatgaagcaaatatttgttgtatgttttgtgtttaggatccttgcgccgaccacctacatattcttcgcttcggccataccggtgatatcgttcggagagcaattggagaggaacactggtaaatggagcagcaaaaaatagattgtttcttgtgtttgattttggttactggtaatgacatcaatgagcagaaaacattttaaaaaaagaataagaagcttattttgggtggtaatggttgtgtgcagatggtgttctgacagcagttcagacattggcatccactgcactttgtggcataatccactcctttcttggagggcagcctctgctgatcctcggtgtggccgagccgacggtgctcatgtacacattcatgttcaactttgccaaggacaggcctgatcttggaaggaggctgttcctcgcatggaccggttggtaggtcatcctagtcggagcgcctcggattattgatccaaaattggtccatgttatgtgtgtcatgtttcatttgggcttatttggttcttttgtgtgtgtgtgtctgattgtctctgcagggtttgtgtctggacagcaattttgctgttcttgctggcgatactaggcgcgtgctcgatcatcaaccggttcacccgcatcgcgggtgagctgtttgggctcctgattgcaatgctcttcatgcagcaggctatcaaggttggtgcttggatgctgccctttcagtgtcattgctctttttggggctagaaagtggtgtagttttttttctctttttttgggaagaaaaaaagaattatatgtggtaaatgttcaggatggcttgctctacttaaggtaaatgtttgcatgaattatgtattgaaaaaaaaaaggttgcacatgtaataagctgtgtagtactctagccaagctaaatcaaccaattagggagagaatctgttatgctggtcaaagcctcaaaggcatgtgcagaaactgaagagcacatggaagctaatggggatgtccccgaattctggctccagcggttctgatgttttgtcattggtgcaactgaatgttcttgtccttaagtcaaaagaattgaagtgcacaacaatatgaatgcctacttgcaaattggacagtatctgaattacttttttgttagccgaattcattccagacagttgacacttgcacatgtaagctcacatttctgttttcgatgcaggggcttgttgacgagttccgcatccctgagagggagaacagaaaggcattagagtttgtttcatcatggaggttcgccaacggaatgtttgctatcgtcttgtcgtttggccttttgctcactgcactgcggagcaggaaggctcgatcatggcgctatggaacaggtatgtgtatggaactgttgctaaccctgcataactgcagatgctatgagaacttatttactccaatctctatattttgtgttgcttatgaatcttcagcacttcagttggtccagttctgaatccctcatgacacatgaattctacctaggttggctccgtggcttcatcgccgactatggtgtcccactgatggtgctagtatggacaggagtttcctacattccatatggtagtgttccaaaaggaattccacggcgccttttcagccccaacccatggtcccctggtgcatatgataattggacagtcatcagggtacattgacagtttgacaccaaaaaataattatattcagtcttcaagtgaaacatcactccttattaattatttctccaatgtcaataaaatgagcaggacatgccaaatgtgccactcctctacattattggtgccttcataccagcaacgatgatagccgtcctgtactacttcgatcacagtgttgcttctcagcttgctcagcagaaggagttcaatttgaggaagcccccatctttccattatgatttgcttctcctgggtttcctggtatgcacatatatgaccataatttttaataacaatttcaatccatcttgaataattatcttattttggccacttctgttgaacaacagacattattgtgtggccttattggtatccctccggcgaatggtgtcattccacagtctccaatgcatacgaagagtttggctactctcaaacatcaagtaagatgggataaattttgttaatatagtacagttaaatttctcatttgcatgacatgattatttctgcagctactccgtaaccgactagtagccacagcccgacaaagcatgagccagaatgcgagcttgagccagctgtatggcagcatgcaggaagcttaccagcagatgcagacaccactgatttaccagcaaccgtcagtcaaggtatgcacaatatctgacaaaactatttcctcatagtctgtacaaaggatatctagttcttgtatgtggaattagtgctcaattttgtataatatgtagggattgaatgagctcaaggactcaacagtccaaatggcttcaagcatgggcaacatcgatgcgccagttgatgagacagtctttgacatcgagaaagaaatcgatgacctgctgcctatcgaggtcaaggagcagaggttgagcaacttgctccaggccacaatggttgggggttgtgttgctgctatgccattgctcaagaagatcccgacttctgtcctctggggctacttcgccttcatggccattgagagcttgcctggtaaccagttctgggagaggatcttgctgctcttcactgctcccagcagaagatacaagtaagtttcatcttgattcagtgcattaactctgttccttcacctgattaaaatgcttaccatttaccaatgtttacagggtgttagaagagtaccacaccacgtttgtcgagaccgtgccattcaagacgatagccatgttcacactcttccagacaatgtatctactcgtctgcttcgggatcacatggatcccgattgctggggttcttttccccctcatgatcatgctgctggttccagtcaggcagtacatcctcccaaagctcttcaaaggtgcacatctgactgatctggatgcagcagagtatgaggagtcaccagctataccgttcattgccgcggtgagttcagaaatacttgttatatctgacaagtatcttcaacttgttcaccaaaatagcacttgctagtctttaaactgatgtgtagatcttaacatgtggaaatgcttgacactaaccatgctcaacattgtgcatttcagcaagatattgatgttgcattggcgcgcacccagagtgcagaaatccttgatgacattgtcactagaagccgtggtgaaatcaagcgcctgaacagtcctaagatcaccagctccggtggcacaccagtggcagaacttaaaggaatccgcagcccttgtatctctgagagggcatacagcccttgtatcaccgagttgaggcatgaccgcagccctctaggaggaagaggcagcccaaggaccggtgagacccgatcgtccaagttgggcgaaggatcaacaccaaagtgaagcaagaatgatgcactgctcatatgagctatgcaactacctgaaatcagctatactaatgatttctgtataactatggcgtacggttatatgatgtcttatgatcaagtatcaagtatgagtctatgagaatgtttatgtatatctctagcctagtatatcaccccttcctctttttttggtgtatttcctgatttggagcaccatatgtgtaatctctgaactaccagaatattagagtgactacttggtaaccttttgagtttcatttgctaaattcctgtcagaacttgtggatgattcatactgaaaactatttgtattc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0566000, RefSeq:Os12g0566000