Os09g0115400

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Revision as of 07:17, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0115400| Description = Similar to Poly(A)-binding protein| Version = NM_001069118.1 GI:115477975 GeneID:4346409| Length = 5042 bp| Definit...")
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Gene Name

Os09g0115400

Description

Similar to Poly(A)-binding protein

Version

NM_001069118.1 GI:115477975 GeneID:4346409

Length

5042 bp

Definition

Oryza sativa Japonica Group Os09g0115400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:1159676..1164717

Sequence Coding Region

1159963..1160211,1160303..1160509,1160631..1160801,1161732..1161869,1162184..1162273
,1162354..1162431,1162510..1163166,1163245..1163363,1164305..1164584

Expression

GEO Profiles:Os09g0115400

Genome Context

<gbrowseImage1> name=NC_008402:1159676..1164717 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:1159676..1164717 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggcggcggcgcaggcgcaagcgcagcaggcggcgagctccgcgtccgagggcgggtccccggcctcctccgccgcggccgctgcggcggcggccgcctccttcccggcgacctcgctctacgtcggggatctcgacgtcagcgtgcaggacgcgcagctcttcgacgtcttcgcgcaggtcggcggcgtcgtctccgtgcgcgtctgcagggacgtcaacacgcggaggtcgctcggctacgcctacgtcaactacagcagccccgccgatgctgcacgagcgttggaaatgctcaacttcactcctatcaatggaaaacctatcaggatcatgtattctaaccgtgaccccagcttgcgcaagagtggcacagcaaatatttttatcaagaaccttgataagtcgatagacaacaaagctttgtatgatactttctgtgtgtttggaaacattctttcatgtaaagttgcaacagatgcttctggagaatcgaagggctatggctttgttcagtatgagcgggatgaggcagctcaagctgctattgataaactcaatggcatgcttatgaatgacaaaaaggtgtatgttgggcctttcattcgtaagcaggagagggataattctccaggccaggtcaagttcaataatgtctatgtaaagaacctgtctgagaatactactgaagatgacttgaaggaaatctttggaaaatttggaaccatcactagcgctgttgtaatgcgtgagggagatggaagatccaagtgttttggatttgttaactttgaaagtccagatgatgctgctcaggctgtccaagagctgaatggcaagaagtttgatgataaggaatggtatgttggaagggcacaaaagaaatcggaaagagagatggaattgaaagagaaatttgagaagaaccttcaagaagcagcagataagtatcaaaacactaacctgtacctgaagaacttggatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattacttcctgcaaggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgtttaaatctgctgaagatgcttcccgagctcttgccgaaatgaacagcaagatggttggcagcaaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggcacaattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatgtttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcgtttatcaacacacagcctggtttcggcttccagcagcctcttatgcctgggatgaggccaggtgcaggtccaatgccgaactttatcatgcctatggttcagcaaggacaacagccgcagcgtccggctggtaggcgtgctggtgctggtggaatgcagcaacccatgccaatgggtcagcaacagatgatggctaggggcggccgtggctatcggtatcctacaggacgtggcatgcctgatcctgcaatgcatggtgttgggggtggtgtgatgccatctccatatgagatgggaggcatgcccatgagagatgctgctgcgtcacagcctgtacctattggagcattggctactgcactggccaacgcagcccctgatcagcaaagaatgatgcttggtgagaacttgtatcctcttgttgatcagctggagcatgagcaggctgcgaaggtgactggcatgctgctggagatggaccagactgaggtgctgcacctgctcgagtctccagaggctctcaaggccaaggttgctgaagccatggaggtccttcgcacggcccagcagatccagacgaacgcgacgcctgaacagcagcttgcttctctgtcgctgaatgacggcgtcgtttcctcctaa</cdnaseq>

Protein Sequence

<aaseq>MAAAAAQAQAQQAASSASEGGSPASSAAAAAAAAASFPATSLYV GDLDVSVQDAQLFDVFAQVGGVVSVRVCRDVNTRRSLGYAYVNYSSPADAARALEMLN FTPINGKPIRIMYSNRDPSLRKSGTANIFIKNLDKSIDNKALYDTFCVFGNILSCKVA TDASGESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERDNSPGQVKF NNVYVKNLSENTTEDDLKEIFGKFGTITSAVVMREGDGRSKCFGFVNFESPDDAAQAV QELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNLQEAADKYQNTNLYLKNLDDSVD DDKLRELFAEYGTITSCKVMRDSNGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPL YVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPAF INTQPGFGFQQPLMPGMRPGAGPMPNFIMPMVQQGQQPQRPAGRRAGAGGMQQPMPMG QQQMMARGGRGYRYPTGRGMPDPAMHGVGGGVMPSPYEMGGMPMRDAAASQPVPIGAL ATALANAAPDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALK AKVAEAMEVLRTAQQIQTNATPEQQLASLSLNDGVVSS</aaseq>

Gene Sequence

<dnaseqindica>4507..4755#4209..4415#3917..4087#2849..2986#2445..2534#2287..2364#1552..2208#1355..1473#134..413#ctccctcgttgccgcgccgcagttgcagttgcagttgggaggcaaatctctctcccaacccttatcaaaccctaaaccgaaaaaatttaccccccaaaaaaatccgcaaaaacaaaaaaaacccaaatcggagatggcggcggcggcggcgcaggcgcaagcgcagcaggcggcgagctccgcgtccgagggcgggtccccggcctcctccgccgcggccgctgcggcggcggccgcctccttcccggcgacctcgctctacgtcggggatctcgacgtcagcgtgcaggacgcgcagctcttcgacgtcttcgcgcaggtcggcggcgtcgtctccgtgcgcgtctgcagggacgtcaacacgcggaggtcgctcggctacgcctacgtcaactacagcagccccgccgatggtacctccccgatccgcctcgccctgctcgattgctgttcttttcccacgaatctagcatctaggtttaggtggattgcttttttttccttttcccaagacgattagggtttggtactctttttttttcttttcacacgtttagggtttggtctcgtcggattttagggtttggtctcgtcggattaggtttgctaccgtcggattagaatgccattagaattgatgtcgctgcggcagtgttaaagcatgcatatttcttttaaaaaagataggaaggctgcccttcttttttctgacgtggttagggtcctgatcctcagcgagctattccattgcagaaataactatggtttagcacaaatcattgccttcccccaatataaatacatttcagtggttcttattttcatatttgtaattctacatcatgttcggtaatgtccattaatctgttatgttggaagataatgcaaatcatttaagatggtacataaacacccctattgagcatcacatttctgtctagatggcaggcacgataaattttgatatgaatcctccttaaattgagtaaagttattatttttataacgtttgtattggagattttgggcttttgcttattttggtgtaatatctcctgttctagtaaatgctctcatctgcagagatgcacgtgaatctgttatgtcacctaaaattttaaaacatttgagatgccatgactaatatgcaataatttctaagttgtgctgcctttgggaaacttgcacattttaaaattctttgcctaacaacatatatttatttactactggctatgatagttgtctatttccttttcttacagaatatccacatgcatctacaatggttttatttgttgcttgacttttgtattagtcctttcatactaaatacgttatatctatcttgcagctgcacgagcgttggaaatgctcaacttcactcctatcaatggaaaacctatcaggatcatgtattctaaccgtgaccccagcttgcgcaagagtggcacagcaaatatttttatcaaggtatctgtgcccactcttgaaagctattttttcatcttttttttttgtagtttgacatcctgacttctcttttttcagaaccttgataagtcgatagacaacaaagctttgtatgatactttctgtgtgtttggaaacattctttcatgtaaagttgcaacagatgcttctggagaatcgaagggctatggctttgttcagtatgagcgggatgaggcagctcaagctgctattgataaactcaatggcatgcttatgaatgacaaaaaggtgtatgttgggcctttcattcgtaagcaggagagggataattctccaggccaggtcaagttcaataatgtctatgtaaagaacctgtctgagaatactactgaagatgacttgaaggaaatctttggaaaatttggaaccatcactagcgctgttgtaatgcgtgagggagatggaagatccaagtgttttggatttgttaactttgaaagtccagatgatgctgctcaggctgtccaagagctgaatggcaagaagtttgatgataaggaatggtatgttggaagggcacaaaagaaatcggaaagagagatggaattgaaagagaaatttgagaagaaccttcaagaagcagcagataagtatcaaaacactaacctgtacctgaagaacttggatgatagtgttgatgatgataagttgagggagctttttgctgagtatggcactattacttcctgcaaggtttgtttacttgtctgcctatgcatgtgtttcaatgcttatcaatttctggtgctaataatagaaactgtgccataggtgatgcgggattcaaatggtgtcagcagaggttctggatttgttgcgtttaaatctgctgaagatgcttcccgagctgtaagctggatgtgtatgcatgatatttaggttgctatgtttcacagataataatgtcttgctttaatgtctccctacagcttgccgaaatgaacagcaagatggttggcagcaaaccgctctacgttgcgcttgcacagcgcaaggaagacaggaaagcaaggctgcaggtaagaaatgatcgatgaccttgttctttgtttttatgaggaccatgaggttcctcaattggccagttttgagagtagcattgtgtgtactttttgcacgtcacaatgtgagtgcgggtgttatttatgcatagaagagtgcggtagctaatattctgtgatgtctcgcattttgaatagaattctggcataccaataaacaagctgtcattagattgaattttcttggctcacataacttgcatgtttttcattataatgcttattattactttctgtagtatgatgttggtggctattccttacttttgcaggcacaattttcacaactgaggcctgtcccacttgctccttcagttggtcctcgcatgcccatgtttccacctggtgttcctggagttggacagcaactgttctatggtcagccccctccagcgtttatcaacacacaggtaaataaggcttaattttcttattgatgtgttcttttgacatcttctctttccataataatcccccttttttttggtgttgtgtgttagtgtgcacaatttctttctttcataagttttagtggtatcttcttactgctttcgcttgtgaccatttgctttgactatttggcggttgcatagtaataagttcttgctgacaaatgcaagatcatgatgtaacgtttaatgccactgtttaatttccagtcctatttataaagattattcctgtaagaatatagcaaacaatcatgtcctaaaggcttttatgataattatgaggtgatcgaatgctagtgttgtttcctttgtgcatttagattaagtggttaaatgatattgattgaacttagacatatgtcttactgttttctgattatgtctcatatattggtcttaagaaaatactacatccaacctgaaagtataaagcttgcttatatgtagtaagtggcaaataattttatctagcaaattgatgtcttcttattctgtgttgcatttatgaatgttatactggcgctgtatttttaactttgcaacattgatcattttcctcatttggttttgcaacacaagatggtcattaacactacacttcttttggttgataagacatgcaacactaagttgtgagcattcagttgtttaatcatgcatctagagctctatgttgcttgctattcctgtttgccgaggagacacaaaactgtagtaatatataacccgtccaaaatttgacactgttagatggtcaagtgcaatttacatttgtttcataggaatagtccaatagtttttttttgtcttgttatgatggactgggtggatacttaagattgtttatatgatttgctggcttgacaattttacctttttttattatagcctggtttcggcttccagcagcctcttatgcctgggatgaggccaggtgcaggtccaatgccgaactttatcatgcctatggttcagcaaggacaacagccgcagcgtccggctggtaggcgtgctggtgctggtggaatgcagcaacccatgccaatgggtcagcaacaggtatgacatatttgtgcgtgtatgctgaacatataataattttccgtaagcattcctgtagtgttaatttgacaattcccttgtgtatcgagtgcctgctgaaatatagttaatgctgcagatgatggctaggggcggccgtggctatcggtatcctacaggacgtggcatgcctgatcctgcaatgcatggtgttgggggtggtgtgatgccatctccatatgagatgggaggcatgcccatgagagatgctgctgcgtcacagcctgtacctattggagcattggctactgcactggccaacgcagcccctgatcagcaaagaatggtttgggacctcatgcctttctctgtttcttatgcatagcgtgaacgtgttcgtcttgaagcgtgacccatttgttcattgattgttgcagatgcttggtgagaacttgtatcctcttgttgatcagctggagcatgagcaggctgcgaaggtgactggcatgctgctggagatggaccagactgaggtgctgcacctgctcgagtctccagaggctctcaaggccaaggttgctgaagccatggaggtccttcgcacggcccagcagatccagacgaacgcgacgcctgaacagcagcttgcttctctgtcgctgaatgacggcgtcgtttcctcctaagcataacgacgacagcaatttttgatccatatctcagttatcttatctatctagaattgaaaacgacttggttacttggtttattggagttttagttttattggtagttgaactaggcatttaggcaatgcgcgtggattgggtattttgtttgctcggatcttttattttgctttataagttatcatatggattgctactttatgtcttctggtagcatcttttattttgtgggtgatgcatgatttagcagtcttgatctgcaccaaatgaagcaaactttggct</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0115400, RefSeq:Os09g0115400