Os12g0583900

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Revision as of 10:35, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0583900| Description = Similar to Permease| Version = NM_001073681.1 GI:115489323 GeneID:4352654| Length = 5760 bp| Definition = Oryza sat...")
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Gene Name

Os12g0583900

Description

Similar to Permease

Version

NM_001073681.1 GI:115489323 GeneID:4352654

Length

5760 bp

Definition

Oryza sativa Japonica Group Os12g0583900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:24450261..24456020

Sequence Coding Region

24451060..24451219,24452080..24452177,24452278..24452454,24452572..24452672,24452766..24452841
,24452925..24452984,24453081..24453277,24453378..24453474,24453560..24453646
,24454007..24454065,24454617..24454708,24454788..24454865,24454973..24455133
,24455385..24455612

Expression

GEO Profiles:Os12g0583900

Genome Context

<gbrowseImage1> name=NC_008405:24450261..24456020 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:24450261..24456020 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggggagatgaaccagccgccgccgccgccggtggccgtgccgccgccgatggtgatgcagccaatcatgcatccgcccgtcggcaccggcgccgtcttcccgccgcacgagcagttccaccatctcgcctactgcgtccactccaacccttcctgggttcaggtggccgcacttgcattcctccactatcttgtgatgctgggttctactgtcatgcttgcatcaactattgttcctgcaatgggtggtaccccaggggataaggctcgtgttattcaatccttcctatttatgagtggcatcaatactctcctccaaacacttgttggaacgcggctccctacagttatgaatgcttcctttgcatttgtcgtcccagtactgtcaatagccaaagactttgaacaaaataactatgcgagcagtcaccagagatttactcacacaatgagagcaactcaaggggctctgattgttgcttctatcctcaacatgattcttgggttcagcacaatttggggggcattcgccaggaaatttagtcctgtaataatgacccctgttgtttgcgttgttggtcttgggctatttgcacttggctttccccaggttggaaagtgtgtggagatcgggctaccaatgctaatccttgcagttgttgtgcaacagtatgtgccatattacttccatcattaccatgagcgaatcaccttcttgtttgagaggtattcgttgcttctttgtattgggattgtgtgggcctttgcagctatccttactgctgctggtgcatacaaccatgtttcactcaagacccagcagcactgccgcactgacaagtcctatctcatatcatcggcaccatggatcaaaatcccataccccttccaatggggtacaccaatcttcactgcaggtcattcatttggaatgatgggtgctgtacttgtttctgcttttgagtccactggtgcacactttgcaactgcacgtctagctggtgcgacaccacctccagctagtgtccttagtaggagtgttggtttgcagggcattggaatgttcctagaaggtatctttggcgctccagctggttcatctgtatcagttgaaaacattgggcttcttggactaacaaaagttggaagcaggagagtgatccagatatcaactggatttatgattttcttctccatatttgggaagtttggtgctttctttgcatctattccattgccaatcttcgcagcaattttctgtatcttatttggtattgttgctgcggtgggagtctcgtacatgcaatttgtaaacaaaaattcgatgaggaacatatacatcattggactttcgctgttcctaggcatctcggttcctcaatacttccatgagtatactgcttctgctagcactggacctgcccgaacaaatgctggatggttcaatgacatcataaacacagtcttcgcctctggcccgacagtgtcactgattgtcgcatcgatcctggacaacacactggagtttagaggctacgaaaacgaccgggggcttccatggttcatgccgttcctgcaccgtcggaaaggttactcagatcctagaaacgacgagttctacagcttcccgatcagggtgcatgacgtcatcccaagccgattcctctga</cdnaseq>

Protein Sequence

<aaseq>MGEMNQPPPPPVAVPPPMVMQPIMHPPVGTGAVFPPHEQFHHLA YCVHSNPSWVQVAALAFLHYLVMLGSTVMLASTIVPAMGGTPGDKARVIQSFLFMSGI NTLLQTLVGTRLPTVMNASFAFVVPVLSIAKDFEQNNYASSHQRFTHTMRATQGALIV ASILNMILGFSTIWGAFARKFSPVIMTPVVCVVGLGLFALGFPQVGKCVEIGLPMLIL AVVVQQYVPYYFHHYHERITFLFERYSLLLCIGIVWAFAAILTAAGAYNHVSLKTQQH CRTDKSYLISSAPWIKIPYPFQWGTPIFTAGHSFGMMGAVLVSAFESTGAHFATARLA GATPPPASVLSRSVGLQGIGMFLEGIFGAPAGSSVSVENIGLLGLTKVGSRRVIQIST GFMIFFSIFGKFGAFFASIPLPIFAAIFCILFGIVAAVGVSYMQFVNKNSMRNIYIIG LSLFLGISVPQYFHEYTASASTGPARTNAGWFNDIINTVFASGPTVSLIVASILDNTL EFRGYENDRGLPWFMPFLHRRKGYSDPRNDEFYSFPIRVHDVIPSRFL</aaseq>

Gene Sequence

<dnaseqindica>800..959#1820..1917#2018..2194#2312..2412#2506..2581#2665..2724#2821..3017#3118..3214#3300..3386#3747..3805#4357..4448#4528..4605#4713..4873#5125..5352#actctctggaaagaagaagaagaagaagcagaagaagcttggagcttgagctttctgaatttgtaagtttattttgctctaattttgggctaccaattgggtttatatttctctagtggtggtgactggtgagtaattttccccttattttattgtgttgatgtgaggccttggggttttctatctctttgcatcgttttcgctttcatttgtttagagatttgttctttgaacaaagcatgcagaaatctctgaggactgaagtgtttctctctgcttgtcactttctccccaattgtggaataactaagaggaatcgacatggggtctagtcttccattccacaagatttgcatcttccccatgaatcttccaagaaaatctgtatctcttacttcctttctttttctctaggtcttgtcttgcaaactaggataaagatacaagttagtagtacaagaaacagtaaaggtgaaagtcttgtgttcttttccctgcgatttcttctgaaaaaggtcgccattaagaaaaagctttgcaatctttggagtgttcttctcacccagtggtttctctgcttgttctcttctgattaataacagtagtagctgctcattaaattgcatctttttttaatttatttaatttctgttgatgtgaaacgcatccaatctcttgcaatcaatgtgaggctttcattggcgtatgagcataaaaaggggggaaagaaaggtgggagtctttaggtttctactcctaaaaattgtttctttcttatgtgcagcagtcggtgtaactaatgggggagatgaaccagccgccgccgccgccggtggccgtgccgccgccgatggtgatgcagccaatcatgcatccgcccgtcggcaccggcgccgtcttcccgccgcacgagcagttccaccatctcgcctactgcgtccactccaacccttcctggggtaaggaaaccccaaccccttcattcctcctcttttttatctttccttgtgtgtttttgtgttggttggtgaatggattggatatgatgaatattccctttcatccctaaaaatttgggagatttgatttttaggagtatctgctggttggggtttttttgactcaagatattttttgcctttggagtgggggagcttctgtgttgtgttgtttttgtatgattcttgaattggggggtgtccagagatatttgatgtgtgttttgatttgaagatttttttttagcataactcctgtttcactcccctgctaatatttgaagagattatggtgtctactggtgcacactattgatgttttccagagagttgtagctactattattttttatagactagtaaaaggaattggtggtggtgatgatttgctttacaccccactacttcatcagatctttagtgaatggatctatgtagacatagctattgtttgtactactacatgcttatgtatgtagatgttgaattctttgtagtacatacgtatatgcagttgctggttgacctagtgtgaatattttaattgtgaaggtaagtataactgtatttgtgtaaccatggaacttttgacatgttcatttgagatcccctgcaatatagaggcaaacacactagttctgtcaaaagaatcttagaagagtagtaggatgttcaggcaaaaacgctatgaagtgctatcttgatttttttaaattatcaaatgtacttctggaaattaaattactcatgtcgattgcagaaatgattaagacatataaagcttgtgctcactaaattactattgttgatattaccttcagttcaggtggccgcacttgcattcctccactatcttgtgatgctgggttctactgtcatgcttgcatcaactattgttcctgcaatgggtggtaccccagtaagtacattgtttattttgttataaagagtttattacgtaccattatagttctcttctaaagaattggtactgaccttttcccgcttgttgctaatagggggataaggctcgtgttattcaatccttcctatttatgagtggcatcaatactctcctccaaacacttgttggaacgcggctccctacagttatgaatgcttcctttgcatttgtcgtcccagtactgtcaatagccaaagactttgaacaaaataactatgcgagcagtcaccaggtagagtaccgttcatatttgttcaatcatagaaaattgtctggatcatgatcaatttatttgcattgattgatcaaattattattgattacttataacctattagggattttgcagagatttactcacacaatgagagcaactcaaggggctctgattgttgcttctatcctcaacatgattcttgggttcagcacaatttggggggcattcgccaggtacatatcttataatatttgttcttagactacaatagtcattttgtgctagattttttcaaggtattgacatttgaattgatttctttccaggaaatttagtcctgtaataatgacccctgttgtttgcgttgttggtcttgggctatttgcacttggctttccccaggtacgatctctatattatttttacaggaaaatctagcagttcgcaaataaaggaagcatgttctctttggtttcccatggtaggttggaaagtgtgtggagatcgggctaccaatgctaatccttgcagttgttgtgcaacaggtaatgaattaatctccttatagggcggtttcttttaataacactctaaccggtgatatactacgaaacttactatttactatgctgtgtatgcagtatgtgccatattacttccatcattaccatgagcgaatcaccttcttgtttgagaggtattcgttgcttctttgtattgggattgtgtgggcctttgcagctatccttactgctgctggtgcatacaaccatgtttcactcaagacccagcagcactgccgcactgacaagtcctatctcatatcatcggcaccatggtatcgttctcaagtatattgattatgaactgattttaaaaggctgtaggttcttcagatagccatttctaatcgaccctttacatacatgctctactaggatcaaaatcccataccccttccaatggggtacaccaatcttcactgcaggtcattcatttggaatgatgggtgctgtacttgtttctgcttttgaggtaagaccaaggcccaaaaatgtaatcagatctcttttgttatgttttatcttttgttgtttctaatgtgtgttatctcatgtagtccactggtgcacactttgcaactgcacgtctagctggtgcgacaccacctccagctagtgtccttagtaggagtgttggtttgcaggtgagttttgttcaatataagattttatattcttacaccacatctcagtctacattaccgacaccaataaaatgtcttgtctgtatctaacttgcatttgaaaacaagtccccagctcattaatctctaacaagtaatagcgagacatcaaatatggttgtttgtacatactatgcatgactttcctttgctactaaaaatattgatttaatcggatggatctgtgggagagctgttagttcaagtccttgatttactaatgctattacctattatttattttgccatccttgcttttacttgtgaaattttcttgtgccatccttgacgactttacaattttactcgtgtgaaatgcagggcattggaatgttcctagaaggtatctttggcgctccagctggttcatctgtatcagtgtaaggggatctcaacttttatgccctttctatgagtttgttattcgagaagactagaacagttccatgcaaatagatgttaaatatatatgcttcaaacaataaatgctcaaaataagatgtagtgttggtgttaacagagtatctagtcctacattctagctatagttgtacatcgttctggttaggtaaagctttttgtggtattcagtttattactctggggtaggagctgattaggaaccatagtacacatgatgaaatgtaaagttcacatatttttatgggtaggccatggtatgaaattattctgttattatgtacagaacatgtaattattctgtacaactaaccataggcaacttgacggtccctgcttacacacttaaaaaagatacggagtacttgctttgcaaacccttttgtggttaggaatagtggaatactatactggtgggctttgatcacattgcatgagagtaagatttagtttctttatatttgtgttcatttgtgaactgaaaggaccccttgcctttaatataatgcagtgaaaacattgggcttcttggactaacaaaagttggaagcaggagagtgatccagatatcaactggatttatgattttcttctccatatttggtaatcttttggtctcatcttcagttgccaaaggggaaagatagttttgtctgaaatttgtatacttctattcatgcagggaagtttggtgctttctttgcatctattccattgccaatcttcgcagcaattttctgtatcttatttggtattgttggtgagtccgaattttctttcttaagagtccttgcatcgatgaatatatatggccgcaacatgattgtgttcattttatgttctaatctgttttttttggcatatcagctgcggtgggagtctcgtacatgcaatttgtaaacaaaaattcgatgaggaacatatacatcattggactttcgctgttcctaggcatctcggttcctcaatacttccatgagtatactgcttctgctagcactggacctgcccgaacaaatgctggatgggtatattccttgcccccctcgcatgctatttacacagcattatgttctgaccatctgtgatctgactgtggtgatacattctggaattatatttttggtctttgctcctgcactctttaaaaaagtttatacctcggtgtatattattttaattagacacctttgggctttaattgtcttaggtctgtgtcttgaactcttggtacatgagttctggtttctaaacaaatcttttttgtttcgtattgcagttcaatgacatcataaacacagtcttcgcctctggcccgacagtgtcactgattgtcgcatcgatcctggacaacacactggagtttagaggctacgaaaacgaccgggggcttccatggttcatgccgttcctgcaccgtcggaaaggttactcagatcctagaaacgacgagttctacagcttcccgatcagggtgcatgacgtcatcccaagccgattcctctgacgggcgagggtagcgcccgttacctgcgcttccgcgcatgtaaatctctttgttcttgttagcccttccttactcctgtgacatgtagcaattggcaccgccaagattaaaaagtctcaacttagtggggatatggtacaaatggttaggacttttggttttcttttctttttcctcccctttgggccaaccatttggttaattacatgatggtgtagagttggttaaatgattttgggatggatctttaaagaatatcagccacctcaatttgttgattgctcagccagtgatgtagatgtgcttccaggacatgcattgatttcgtcataactctgtaatcacaccatcttttcactgcatttgattgagaaaacttcagaatcagacctgatgcacattgaactc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0583900, RefSeq:Os12g0583900