BGIOSGA008560

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Revision as of 03:17, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA008560| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA008560, complete gene.| tag = OSJNBA0...")
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Gene Name

BGIOSGA008560

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA008560, complete gene.

LocusTag

OSJNBA0038P01.2

Ensembl Transcript ID

BGIOSGA008560-TA

Ensembl Protein ID

BGIOSGA008560-PA

Length

6338

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:25128978..25135315

Sequence Coding Region

25128978..25129185,25129275..25129303,25129960..25130062,25130309..25130480,25130878..25130938
,25131255..25131387,25131936..25132206,25132593..25132807,25132898..25132996
,25133078..25133586,25133671..25134428,25134522..25134720,25135160..25135315

Genome Context

<gbrowseImage1> name=IndicaChromosome02:25128978..25135315 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:25128978..25135315 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGAGCAACCCAAGCAGCTCCGCGGCGAGGGCTGCGGGCTCCCAGGGCGGCGGCCATGGTGGCGCGCGCCTCGAAGACCTAGCACTGGACAAGGTGGCGGAGGCGGCCGACGCGGTCGCCGCCGCGTCGAGCGCCGGCGAGGTCGTCCGCGCGATCCACGCCGTCGCCGCCCTCGTCTTCCCCGTCGACTCCGCTGCCGTAGCCGGTACCGTGGACGAACCCTTCAGGAGCCAGATAATTAATGGCGTAAGCCTCAGCAATGATGAACGGGGATCTTGGAGGCATGCTTTTTACCATGGTCCAGCATTTCCTACTATATCTAAGATTTTGCTTGGCCATGTTGCCTTGAAGTGGTTACGTCAGATCCGTGCCTCTGCAAGGAAGGAAATATATGATTCGTTTTTTGTCAAAGGACCTCCAACTGAAGTCATTCAAGCTCTTGTTCCTGCTTTGTCTCACAAAGGAGGCTCTAAGGAAGATCATAACATTATGTGTTCAAATATTGAAAGGCTGTTAATTCTATGTTTGGTCGAGAATAAGGGGGTCAGCCAGATTATTGCAGAGTTTACTCTTCTTGTTGCAACTGAACAAGCGGCTATGGAGTTGGCTGCTGGCGAAGATGCTAATGGACTAGATGCCTCCAATTCTGTGTTCCTCTTCGTGGGTGAAGTGATATCTCGTGTTAGCCGTCGTGGATCTACTGGCATTTTAGTTGCTGAGCTGATTCCTAGGATCCGTAGTCACTTAAAGAGATGTATGGAATCTGATCATAAAACCATAAGTCCTGACAAGATCAAGCATGTTTCCCAATTTTGGTTTAATGTGGTTGAGGCTATTAGAGACCAGCATTCTGTTGAAAGGTTGGCGGAAGAGATGTTGCGCCAACTTGCATCACAACATACAAGCGATGAGGAGGCATACTGGATTCTGTGGACTTTGTTTAATCAGAGCTTCATGCACAAAACTGTTTTGAGGGCAATGTTTGTTGACAAATTTTTGCGTTGGAAAACATTCCCTCTATGTTGTCTGAGATGGATTCTTCACTATGCTGTCTTTGAATTGCCACCAAATTCAGGCATAGAAACACAGAAGCAAAGGACATCGAGCTTCCTTGGTACACTGCAAACTTTAGTCAGTGTTTGGTCCAAGAAAGAGTTTGTCCAGGCATACTCAGTGGAGCAACAAGCTTACATCACTGCAGCAATTGGGTTGTGTTTGGAGAAGATGTCAAAAAGAGAATTAGAAACAACTAAAGATGTATTGAACAATATTCTTGAAGGTGTAAGCTGTAGGTTAGAGAGTCCAATTGATTTAATCCGGAAGATGGCCAGTGCTATTGCATTGACATTTTCTAAAGTTGTTGATCCAAACAATCCTCTATACCTTGATGATAACTGTTGTGAGAATGTTGAGTGGGACTTTGGGGTTTTATCTCCGAAGGAAATCACAGCCCCTTCAAAGGATGTAGAACTTATAAGCAAACTGAAACCATCTTTGCCTGAGAACAAGAAACATGCTGGTGAGAGAAGGGCAAAGGCTATTAAACATGATACTTCAGAGAACAGGGCAAAAATCATTGAGATCAAATCACTAGATTCTTGTGAAACGTCTGGTTCTGCTGTGAATGGGCATTTCGAAGAGGAAGAATGTGATGAGGAAATAATGAACATTGATGCCTCCAGTGATTCATCCCTGGAGCCATATGATCTGTCAGACGATGACTCAGATTTGCAGAAGAAATTCACCCAATTAAAAGATCTTGCTGCTGCACTACGAAAACCTGATGATCCAGACGGTGTTGAAAACGCTCTGAGTTCTGCCGAAAAGCTTGTGAGAGCATCACCTGATGAACTACGCCACAACTCAGGTGATCTTGTTAGAGCACTTGTGCATGTTCGATGTTCTGACGTGGCAATGGAAGGAGAGGAAGATTCTGCTGAAGAAAAGAGACAGAAGGCATTAGTTGCCTTGCTGGTAACCTGCACATTTGAATCATTAGATGTTCTCACCAAGTTGCTGTACTCATCAAGCGTGGATGTAAGTCAGCGCATTTTGATTATTGATGTTATGACTGAGGCCGCACAGGAGCTTGCGGAAACTAAAATTGTAAGGAGAGAGCTGCGGCATGGAAACTTGATATCCGACACCTCTCCCTCTTGGCTAGTTCCTAGTGATCAGGGACCTGCTGGTGCAGGTCCTTGGAGGGAAGTCTCAGAATCAGGAACACTTCTGAATTGGTCACACCGGTATGAAAGAGAAGTTCCATCTAGATCTGGTCAAGTTAAATCAGGAAAATCTCGTAAATGGGGTCTTGGAAAAGCTAAAGATTTGCAGACAGAGTGGTCAAAAAACAGATTTCCTTTATATGCTGCTGCTTTTATGCTCCCTGTTATGCAAGGATATGATAAAAGATCACATGGTGTTGACTTGCTCAATCGGGACTTTGTTGTCCTAGGTAAATTGATATACATGCTTGGTGTCTGTATGAAGTGCATGGCAATGCATCCAGAAGCATCAGCTGTTGCCCCAGCTCTTCTTGATATGATCAGATCTAGGGCTGTTTCGCAACATCCCGAAGCATACGTCAGGAGGTCTGTGTTGTTTGCAGCTTCTTGCATACTGATAGCGCTGCATCCGTCGTATGTTGCATCATCTCTTATAGAAGGAAATCAGGATGTTTCTACTGGTTTGGAATGGATACGCACATGGGCTCTTCATGTTGCAGAAACAGATCCTGATACAGAATGCACATCAATGGCTATGACCTGCCTGCGGCTTCATTCTGAGATGGCCCTTCAGACATCACGAGCACTGGAATCGGCGGATCACAGCAAGGCCAGCAGCAGCAGCAGCAGGTCGCTACCTTCTAAGCTTGATAACATCATCATACCATTTGCCAACATGATGTGA</cdnaseq>

Protein Sequence

<aaseq>MASNPSSSAARAAGSQGGGHGGARLEDLALDKVAEAADAVAAASSAGEVVRAIHAVAALVFPVDSAAVAGTVDEPFRSQIINGVSLSNDERGSWRHAFYHGPAFPTISKILLGHVALKWLRQIRASARKEIYDSFFVKGPPTEVIQALVPALSHKGGSKEDHNIMCSNIERLLILCLVENKGVSQIIAEFTLLVATEQAAMELAAGEDANGLDASNSVFLFVGEVISRVSRRGSTGILVAELIPRIRSHLKRCMESDHKTISPDKIKHVSQFWFNVVEAIRDQHSVERLAEEMLRQLASQHTSDEEAYWILWTLFNQSFMHKTVLRAMFVDKFLRWKTFPLCCLRWILHYAVFELPPNSGIETQKQRTSSFLGTLQTLVSVWSKKEFVQAYSVEQQAYITAAIGLCLEKMSKRELETTKDVLNNILEGVSCRLESPIDLIRKMASAIALTFSKVVDPNNPLYLDDNCCENVEWDFGVLSPKEITAPSKDVELISKLKPSLPENKKHAGERRAKAIKHDTSENRAKIIEIKSLDSCETSGSAVNGHFEEEECDEEIMNIDASSDSSLEPYDLSDDDSDLQKKFTQLKDLAAALRKPDDPDGVENALSSAEKLVRASPDELRHNSGDLVRALVHVRCSDVAMEGEEDSAEEKRQKALVALLVTCTFESLDVLTKLLYSSSVDVSQRILIIDVMTEAAQELAETKIVRRELRHGNLISDTSPSWLVPSDQGPAGAGPWREVSESGTLLNWSHRYEREVPSRSGQVKSGKSRKWGLGKAKDLQTEWSKNRFPLYAAAFMLPVMQGYDKRSHGVDLLNRDFVVLGKLIYMLGVCMKCMAMHPEASAVAPALLDMIRSRAVSQHPEAYVRRSVLFAASCILIALHPSYVASSLIEGNQDVSTGLEWIRTWALHVAETDPDTECTSMAMTCLRLHSEMALQTSRALESADHSKASSSSSRSLPSKLDNIIIPFANMM</aaseq>

Gene Sequence

<dnaseqindica>1..208#298..326#983..1085#1332..1503#1901..1961#2278..2410#2959..3229#3616..3830#3921..4019#4101..4609#4694..5451#5545..5743#6183..6338#ATGGCGAGCAACCCAAGCAGCTCCGCGGCGAGGGCTGCGGGCTCCCAGGGCGGCGGCCATGGTGGCGCGCGCCTCGAAGACCTAGCACTGGACAAGGTGGCGGAGGCGGCCGACGCGGTCGCCGCCGCGTCGAGCGCCGGCGAGGTCGTCCGCGCGATCCACGCCGTCGCCGCCCTCGTCTTCCCCGTCGACTCCGCTGCCGTAGCCGGTGAGGCTCCGAATCCTAATCCGACATGCTCCCTATTCCCATTTATCTCATTCGCCGTCACTTGGGGTGTCTGATGGCCTCTCTTGTAGGTACCGTGGACGAACCCTTCAGGAGCCAGGTGAAGCTCTGTGCTAATTTTAGGCCTTTTATTTCGTCCATCTGAGAAAAATTACTAGTAGTTTTATCATTTGCTATTTTTGGTTCTGGCATAAACAATGATGTGTGATTTCTAATAATCATGGAAGGGGTCTGTGATAAAAAAAATGGGGAAGTCTTGAGTTTTTGTTTTGACCTGCAATCACAAAGGACTGTATGCCGAAATGGAGCAGTAATTCTGCCACAAAAAATAGAAATGGAGCATTAAGATATCATAGTGAACTATTGGTTATGTGGACAATGTTTCAGCCGCTGTAATGTCATAATTGTGGTGCATATATTTGAGGAAATTGATCTCTGGAAGGAATTACTCCGAAACTGGATTGATAAGCATCCACAGAATTTTCCAGTTGATAAACCTATAACTTTGGTCACACAATGGGTAATCGAATTGCAGGACCTTGCTAGGTGAGCTGTAGCAGCACACATTTTGTAAAACCTGTGTCATTTGATAATGCATTCAGAATACAGAAGATCATGTTTCATGCTTGAGAGATAAATTAGTATGGATATTCAAAGACACATGCTTCCTTCAATATGATTCAGCCAAATAGCCAATTGGAGTTCCATCCTTTTAGGCCATGATGTAACAGGGAGAATTATTTTCTGTACTTTCAGATAATTAATGGCGTAAGCCTCAGCAATGATGAACGGGGATCTTGGAGGCATGCTTTTTACCATGGTCCAGCATTTCCTACTATATCTAAGATTTTGCTTGGCCGTAAGTTTACTCTTGAATCTATCACTGCATATATACTTTGTACCATTGATATTCTTTACATGTACAACTCTCCTGTTTGCTTATAATGTTATCTGCCAGTCATACAAGTCATACTTCATTTGTATTGTTTATCGATCTCTACAATTTGATTACTATACACTCAAAACTTCTTGATTGTTCATCACAGTTAGGTCAGTTGCAAAGTTCCTTCAGTTATAATCCCATTCTCACACTTTGGTTGTCCAGATGTTGCCTTGAAGTGGTTACGTCAGATCCGTGCCTCTGCAAGGAAGGAAATATATGATTCGTTTTTTGTCAAAGGACCTCCAACTGAAGTCATTCAAGCTCTTGTTCCTGCTTTGTCTCACAAAGGAGGCTCTAAGGAAGATCATAACATTATGTGTTCAAATATTGAAAGGTTATTCATGAACAATCTATCAATTCTATTAAGTTTACACCTGAATCTTTTATTGGTCCAACTTTGTTTGCTTTTACTATAAGTCTATAGCACATCCTTCTTTTTGACAATTCCCTGTGAGTTCAAAACTTCAAATATTACACCCAAACCTTGTAGGACAAAATTTCAAGTTTCAACACTTCGACTACATGGGTCTGTACTAATATCATGTATTTGTCCAATCGTCTGCTTTGTATTCTTAAGTCTATTTTATGCTCGAGTCATTAGGAAATCAAACAATCTAGCATGCACACTTCATCTGAAAATTCATGGGTCTGTTCCTACCTGGTATCTTCCTTTTTTCTCACCCGATAACTATGTTTTGAGCTTGGTGTGTCATTATTTCCCCCCATTTCAGGCTGTTAATTCTATGTTTGGTCGAGAATAAGGGGGTCAGCCAGATTATTGCAGAGTTTACTGTAAGCAGCAAGCACGATGATGACAACTTGAACCCAGGCAGAGCAGCTTTCATTTCAAGGGTTGCTCAACTACTTGCATCTGTTCCAGATAAAACAAGAATGGGAGCTTCACCTGCACTGACATCATCGTATCCTCACCCCCACCGCCCCAAACACGACACACACAAACACAAACATCTTTGTTATTTTTTTCCTTTCCTTTTATTCTGTTAGCTTTTTCTCAGCTAATATGTATTTATTTGCACTATGTTTGTTCCTCCAAACTGTAAGTCCTTGATGGAAACCAAGGTCATTCTTCAAGTGTGTTGTCGATCAGCTTCTTGTTGCAACTGAACAAGCGGCTATGGAGTTGGCTGCTGGCGAAGATGCTAATGGACTAGATGCCTCCAATTCTGTGTTCCTCTTCGTGGGTGAAGTGATATCTCGTGTTAGCCGTCGTGGATCTACTGGTGAGTATTCATCCTTCAGGATGTAGCTTGACGTGTGCAGTGTGCTGTTAGTTTATCTGTTTAGACATTTCTATTTACTAATGGGGGCAGTTCTAGTTGGTGCAGTAATGGTTTAGCAATGCATTTGTGTCTGGTAGGATTATAGTGTATTCAACTCAACATTTATGTTTGCGATGGTCTGCTACTAGGGTGATGGAGCAGATCCTTTTTTGTCCTCATATAATCTTTAATCCTTATGCAAACTAATACAACACAGTGGTACACATTTGGTTTTCTCTGATGGTCCACTAATAGTCCCTTCAGCTGAAATTTTAAACATTTAAGGTAGCCTGTTTTTGGGTTTTTATCCAGTGTTCACTTTTGGCAATCACAGTAGACTTGGGGTCTGCAATGCTTGAGATGTCACCCAGGATAGCAGTGCCTCATGTCATGGCTGATCATCCTAGCACACTGTTCTAGTCATTAACAACTTCTTGTTTGTAATCTATGTAGCCATCCTTTTCCCTACTATTTGTTGTATTTCTGATAATATATCTTGCTCTTTTCAGGCATTTTAGTTGCTGAGCTGATTCCTAGGATCCGTAGTCACTTAAAGAGATGTATGGAATCTGATCATAAAACCATAAGTCCTGACAAGATCAAGCATGTTTCCCAATTTTGGTTTAATGTGGTTGAGGCTATTAGAGACCAGCATTCTGTTGAAAGGTTGGCGGAAGAGATGTTGCGCCAACTTGCATCACAACATACAAGCGATGAGGAGGCATACTGGATTCTGTGGACTTTGTTTAATCAGAGCTTCATGCACAAAACTGTTTTGAGGTGAGAATGAGATAGTACATGTGCGCATTTTAATACTATGCAACACTTGACGTGCTTGTTTTTTAGTTTATCCACATTGGTTCATCTGTGTCTGGCATGCTACATTTATCTGTGAAGGAAAAAGTACTTCTGAGGTTTATTTTTTTCAGTTAGTGGATGTTTTAGGTAAGGTGAATGATAGTCTTCAGATACCCTGTATGTCTTTGTTACTTCATTCCTATGAACGACAAACAGGGTGCCATGTATGTTTACTTAACTTTCAGCATGGGCTTATATTATGGGTGTCTATTCAGCGTATAATTGGCATGCAGCGATTGATCAAATAATCTTCAACGTGTCTTTTCTTTTCTTTTCTTTCATCCTTTAATTCTCTGTGCTTTCTTCAGGGCAATGTTTGTTGACAAATTTTTGCGTTGGAAAACATTCCCTCTATGTTGTCTGAGATGGATTCTTCACTATGCTGTCTTTGAATTGCCACCAAATTCAGGCATAGAAACACAGAAGCAAAGGACATCGAGCTTCCTTGGTACACTGCAAACTTTAGTCAGTGTTTGGTCCAAGAAAGAGTTTGTCCAGGCATACTCAGTGGAGCAACAAGCTTGTATCCTTTGAGGCACTCAAAACTGTATTACATTACACACTTTTTATTTGCAAATTATCATTTGACTTGTTCCCCTTAAACAACACTCAGACATCACTGCAGCAATTGGGTTGTGTTTGGAGAAGATGTCAAAAAGAGAATTAGAAACAACTAAAGATGTATTGAACAATATTCTTGAAGGTGTAAGCTGTGAGTATCCCCCCCCCCACCCCCCCTGCATTAGCTTATCATATTATTATTATGGTAATACTGAATGCTCTTTTGCTGTAGGTAGGTTAGAGAGTCCAATTGATTTAATCCGGAAGATGGCCAGTGCTATTGCATTGACATTTTCTAAAGTTGTTGATCCAAACAATCCTCTATACCTTGATGATAACTGTTGTGAGAATGTTGAGTGGGACTTTGGGGTTTTATCTCCGAAGGAAATCACAGCCCCTTCAAAGGATGTAGAACTTATAAGCAAACTGAAACCATCTTTGCCTGAGAACAAGAAACATGCTGGTGAGAGAAGGGCAAAGGCTATTAAACATGATACTTCAGAGAACAGGGCAAAAATCATTGAGATCAAATCACTAGATTCTTGTGAAACGTCTGGTTCTGCTGTGAATGGGCATTTCGAAGAGGAAGAATGTGATGAGGAAATAATGAACATTGATGCCTCCAGTGATTCATCCCTGGAGCCATATGATCTGTCAGACGATGACTCAGATTTGCAGAAGAAATTCACCCAATTAAAAGATCTTGCTGCTGCACTACGAAAACCTGATGATCCAGACGGTGTAAGTTTCTATCTAGTGCTACCTGTACTTTCCAGAGCAAATTATTGTAAAATTCTGATCATCCTCCCTTTTTTTTTACCCAAGGTTGAAAACGCTCTGAGTTCTGCCGAAAAGCTTGTGAGAGCATCACCTGATGAACTACGCCACAACTCAGGTGATCTTGTTAGAGCACTTGTGCATGTTCGATGTTCTGACGTGGCAATGGAAGGAGAGGAAGATTCTGCTGAAGAAAAGAGACAGAAGGCATTAGTTGCCTTGCTGGTAACCTGCACATTTGAATCATTAGATGTTCTCACCAAGTTGCTGTACTCATCAAGCGTGGATGTAAGTCAGCGCATTTTGATTATTGATGTTATGACTGAGGCCGCACAGGAGCTTGCGGAAACTAAAATTGTAAGGAGAGAGCTGCGGCATGGAAACTTGATATCCGACACCTCTCCCTCTTGGCTAGTTCCTAGTGATCAGGGACCTGCTGGTGCAGGTCCTTGGAGGGAAGTCTCAGAATCAGGAACACTTCTGAATTGGTCACACCGGTATGAAAGAGAAGTTCCATCTAGATCTGGTCAAGTTAAATCAGGAAAATCTCGTAAATGGGGTCTTGGAAAAGCTAAAGATTTGCAGACAGAGTGGTCAAAAAACAGATTTCCTTTATATGCTGCTGCTTTTATGCTCCCTGTTATGCAAGGATATGATAAAAGATCACATGGTGTTGACTTGCTCAATCGGGACTTTGTTGTCCTAGGTAAATTGATATACATGCTTGGTGTCTGTATGAAGTGCATGGCAATGCATCCAGAAGCATCAGCTGTTGCCCCAGCTCTTCTTGATATGATCAGATCTAGGTATGCCAAGCCTAAAACAAGCATTTCCGTGTTAAAGACTTTCTTAGTTATAACCAAGTGGTACGATTTTGACATTGGATTTTGTTTCTGCAGGGCTGTTTCGCAACATCCCGAAGCATACGTCAGGAGGTCTGTGTTGTTTGCAGCTTCTTGCATACTGATAGCGCTGCATCCGTCGTATGTTGCATCATCTCTTATAGAAGGAAATCAGGATGTTTCTACTGGTTTGGAATGGATACGCACATGGGCTCTTCATGTTGCAGAAACAGATCCTGATACAGAATGCACATCAGTAAGTACTCTGGTCTATATCTGTTATCGATCACTTGTTCGTGTTTTGTTCGTCGACGTAGAGAGCAATTATGGTATAATAGGATGACATTTGTTTCTTAAAACCACACACAATAATAATAGGTCATTTTTTGACGAACAAAGGAGTACAGTTATGCTGGTTTTGTATCAAAGTTTGTCTGCATCGCCTAATCATTTCAGTAACCTACCCTTATATGCTTTAGTTTTCTGTAACCTACTCATTTCTCTCATTCCTTCAGTATACAAATTCAGTGACCCAGCTCTTTTCAGCAATTTGTAACGAAAAACAGGACATATTTTTACTTATAAGCTGGAAACCAGTTTTTACTTAAAAGAGAAACCAATTCAGTATAAGCTGGAAACTCAGTAACTTTTCACACTGTCATCTAACTCCTCCCATTGGCATGTTTGTCTTCAAGATGGCTATGACCTGCCTGCGGCTTCATTCTGAGATGGCCCTTCAGACATCACGAGCACTGGAATCGGCGGATCACAGCAAGGCCAGCAGCAGCAGCAGCAGGTCGCTACCTTCTAAGCTTGATAACATCATCATACCATTTGCCAACATGATGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA008560

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