Os12g0595000

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Revision as of 10:36, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0595000| Description = EXS, C-terminal domain containing protein| Version = NM_001073712.1 GI:115489385 GeneID:4352689| Length = 5190 bp| ...")
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Gene Name

Os12g0595000

Description

EXS, C-terminal domain containing protein

Version

NM_001073712.1 GI:115489385 GeneID:4352689

Length

5190 bp

Definition

Oryza sativa Japonica Group Os12g0595000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:25179518..25184707

Sequence Coding Region

25179804..25180058,25180141..25180210,25180299..25180464,25180584..25180734,25180926..25180973
,25181255..25181308,25181483..25181596,25182283..25182378,25182749..25182865
,25182982..25183074,25183168..25183206,25184073..25184206,25184356..25184434

Expression

GEO Profiles:Os12g0595000

Genome Context

<gbrowseImage1> name=NC_008405:25179518..25184707 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:25179518..25184707 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>aggctccccctgctgccgccatcgccgtcgacggctcctcctcccctcccccggtggagatccggggtggtgttcctcgggttcacgcataggaggtggcggctgcgcgcgcagaggctcgggggcgagggcggcggcgcgggcgagatgaaggggtcggccatcccggcggtcgcgatcatgccctcgccgctcttcctctggcggttcaaggttgtattgtttctcctatggggtttatgctgttgcaagataggttgggactctgttatgagaatgagtgctgatctgcgagacttatttctttacgaagctttcttatactacaatccgcttcttcttgtggctctgatgatttggttatggggagtaaacctgtgggtctttgcacaatcatcagtgaattacgcaagggtgtttgatcttgcacaaacacatttatcgcatcgagaaatatggaggtgtgctacttggcttactttgattgttcccacgagtatgacagcttacctatatttgtactcacatggagaagtgtcccttgctgcatctcaaccagttcttttatatgctatccttcttatagtcctcttatctccttttgatatgttttacctgtcgtcacgcttttactttctgaggacagtgtggcgtataatgcttccattgcaagcaattacattccccgacttctttttggctgatatttttacatccatgtcaaaggtcttctcagacttggaacgttcagtttgtcgcatggtcaatcggcaggttgcaacgaccgcttggcttgaagcagattcaatttgtggcagccattctgtagctattcctctagttcttgtgttcccttatttgtgtcgactcttccaatgccttcgacaatacaaagatacaaaggagaagacttgtcttcttaatgcactcaagtactcgacagcggttccggtgattttcctttcagctctcaagtatcatgtattccctgacaagtgggttagcttttatcgacccctctggcttatgtccagtgttataaattcgctgtattccttttactgggatataaagcgagattgggatttgagcatcttaactaggattttcatgttcaaaaacccaagtacatggactaaccttctttatgggcagatctgggtatattactgggtgttagccagcaatcttgtgctccgctgtacatggacgtacaagctttcagcacatcttcggcacaactacctgacagtgtttacaatagcagcgctggaaatattgaggcggtttcagtgggtgttcttccgtgtcgagaacgagtggaacaagatgacagccaagcagagtctggaaatgtcatctgacatgccctctgaaggagacaggcttttggattcaaatagtcatacagtatga</cdnaseq>

Protein Sequence

<aaseq>RLPLLPPSPSTAPPPLPRWRSGVVFLGFTHRRWRLRAQRLGGEG GGAGEMKGSAIPAVAIMPSPLFLWRFKVVLFLLWGLCCCKIGWDSVMRMSADLRDLFL YEAFLYYNPLLLVALMIWLWGVNLWVFAQSSVNYARVFDLAQTHLSHREIWRCATWLT LIVPTSMTAYLYLYSHGEVSLAASQPVLLYAILLIVLLSPFDMFYLSSRFYFLRTVWR IMLPLQAITFPDFFLADIFTSMSKVFSDLERSVCRMVNRQVATTAWLEADSICGSHSV AIPLVLVFPYLCRLFQCLRQYKDTKEKTCLLNALKYSTAVPVIFLSALKYHVFPDKWV SFYRPLWLMSSVINSLYSFYWDIKRDWDLSILTRIFMFKNPSTWTNLLYGQIWVYYWV LASNLVLRCTWTYKLSAHLRHNYLTVFTIAALEILRRFQWVFFRVENEWNKMTAKQSL EMSSDMPSEGDRLLDSNSHTV</aaseq>

Gene Sequence

<dnaseqindica>4650..4904#4498..4567#4244..4409#3974..4124#3735..3782#3400..3453#3112..3225#2330..2425#1843..1959#1634..1726#1502..1540#502..635#274..352#gcacggcttcttcgtcttcttctcttccctcctctcgcccaccccccctcgcagatctcgccgcgctctcctcctcctcctcctcctcctcctccgccgccgtctccgcgaagtcgttcccgccgccgccgccgcgggcaccgcccacgcgctccgttccggcaggcggcgcgcgctcgctcgctcgctcttggtgtctctggagaagaagcggagagagagagagagagagaggtggagaggagggagggggtttgctggggtagtctctagaggctccccctgctgccgccatcgccgtcgacggctcctcctcccctcccccggtggagatccggggtggtgttcctcggtaagcgggattggttttggttccggattcgcctcgcggtgggggctatccgtttggtggggcgcggcgggatggatcccgtcgtaatccgctcgcgagggtagagctgttcgtcgtcgctaatgcggggggtttcgcgttgtttgcagggttcacgcataggaggtggcggctgcgcgcgcagaggctcgggggcgagggcggcggcgcgggcgagatgaaggggtcggccatcccggcggtcgcgatcatgccctcgccgctcttcctctggcggttcaaggtatcgtggccttcttcagctcaactcatggtacactgatacggcgaggcgatggatttagcgccgatttggttgcaagtgccagttgtctcctttgcttaattttacctgcttggggttatcgcagcgcgacattgctatgtagttgtaaaataatcaatcatgttatgtgtttgtcctggagtatagtttggtcaataccttgcaactgcggtaaagggtatcacaggaatcacggaggaattacttacctttgctcaaagctaatcgcagagatgactactactcatagttgggaaacattattggattgaggagaagtgatcttacttcatagggtctagtcttttccagatatttgtcctacacattaatatttccctccttcctgctactgatgcataaaccccattttatctgtaccattaattgtaataaaaggaaatcgagaatcatgatttatccttttcttctaaatgaaaactgaagaagagtaaaactcatctcatgtcttattcttggcttcactgggatgtgcttttatccttgacggaccaagataatagtgttgacttcccttgaaatatatggcaggaaatagcattaatcttggcatgcataatgaaatggtctttcaggaatgccaattttcacttatgttttcttctacagcttaactttgaactgcatctgagaggcatgatagaaactacacattagtgcagtgtacaattctttactcccgtgttattatgtaactgaatataaggagtatttagtacaaaagttatcctaagctcttgattctgcatttacgtgcatcaattttacttctctaatcactgataaacccatccatttttcaggttgtattgtttctcctatggggtttatgctgttgcaaggtattctcgctttgatctaaccatatcttttttcttgatatgatctgaatctcttgttgtagttctaattcacatattattttggtgttacagataggttgggactctgttatgagaatgagtgctgatctgcgagacttatttctttacgaagctttcttatactacaatccgcttcttcttgtggtaagtttcttttgtgaagtatgtatgacaatctcaagggccattactgtagaaaagacagcaaatgaaggcacttcctgatcgttttgtacttgtggttcatgtttttgttgtaggctctgatgatttggttatggggagtaaacctgtgggtctttgcacaatcatcagtgaattacgcaagggtgtttgatcttgcacaaacacatttatcgcatcgagaaatatggagggtatgcttatctgattctcctggttgcactttctgtttatgagcttaacttgatttggattttcataagttttctccctttcaaaatgcatctgctctgacatagtttgctatgtacaaatttgtatgtctggcatacagttgctgtcatgacaatgaaagggttcaaagtttgtctatgccatgcccatgtttgggaaaagtttgcaatattttatttaattgtcaacccatcaggatttattgtgctagatgcattttacatttgctgcttcatattcatatgtgcacttttctctggtgttgtgttattacttgattttgtcatatttttggctaatgcaatcttcatctttttatttcattaacagtgtgctacttggcttactttgattgttcccacgagtatgacagcttacctatatttgtactcacatggagaagtgtcccttgctgcatctcaaccagtgtaatatctaacccattaattagttcatttcatgccttgttcctcttgtgtgcttgagctcatgattttttttttgtgtacttaatgtttggttatattgttggtagtgcttaccaatagtcaatttgtgtgtaagagtatcgcgttcccaaagctctcaaaaggaacactgcacctttctttagcatcaactgttactgtacttgtgctttgattttccttagtcaaataagtggaaagtctcatctagtacaataagactttttatgcaagacaaacaaattttatgagtgatggatggtttaattattagaatgaacctaaaggtttgtacgcactgtttcttttttacttgtcatttacgtcatcggcatggtcactaatacacgtatttaaccattcttttactaaccatatgtactgatgagtgatgacattctcagtgacaagtcctagtacttctgtatgtacttgaagttttttttttaccctgtatatacttgaagtttgtctgcatatgttttaaaacaaaaccaatttaagaacactaggtgtagggtatattgccttcttgtttgttcaccatgttgaagatgaaactatcatgcagtgttgtcatgtattgtatcatgccgtgccaattccagggtggtggaactaacatatctttctgcctattttcaggttcttttatatgctatccttcttatagtcctcttatctccttttgatatgttttacctgtcgtcacgcttttactttctgaggacagtgtggcgtataatgcttccattgcaagtaagttgtacaatttgttagtaaggggtgtggtagtttttgtttttagctgtgcaacatgcactatgctactgcctgttgtgactaagcatatgccttttatgtccttgctgtggagccagcaattagatcagactaacttttttgatggtttccttcccccctgttctgcaggcaattacattccccgacttctttttggctgatatttttacatccatgtcaaaggtatggagcaatttatttaaaattgttggttgtggattgttttgtgtacattatttctgtatagagaatatagggaaagacttactgtctaatactatatgattctctgtttggcctctaggatttaatgtgtacaatgttctctacaaattaaaaaagcactacatgacatgctatattttagtttgtagagaactgtttcttgcttgtatttggcctgagttagcattcatgatacttggtattttaccattttgcctaattgttgcatttcttcacaggtcttctcagacttggaacgttcagtttgtcgcatggtcaatcggcaggttaatttcttatacttactttttttgtggggaatttcttatacttgctgttgtgctatgtgcattatgtcctcaatggtctctaagtgactgtcaaacgacatgccattggcttatattgacagttgtaaattattggtataactcatctcgttcctgtataatgtgttcattattatgatattctacaggttgcaacgaccgcttggcttgaagcagattcaatttgtggcagccattctgtagctattcctctagttcttgtgttcccttatttgtgtcgactcttccaatgccttcgacaatacaaagatacaaaggagaagacttgtcttcttaatggtatttactgattgttacttgttgcaattatggcttgctttaaaaaaatgatctagaacgcattcgtcccatgtttgctaccagttcctctaaccaacaaacatttgtctcaaatccagcactcaagtactcgacagcggttccggtgattttcctttcagctctcaagtatcatgtattccctgacaagtgggttagcttttatcgacccctctggcttatgtccagtgttataaattcgctgtattccttttactgggatataaagcgagattgggatttgaggtgtgctatcttcacatgatctttgttttagagcttcagcatgtgttttcacatctcagttgctgctaatagtttcttttctctgcagcatcttaactaggattttcatgttcaaaaacccaagtacatggactaaccttctttatgggcagatctgggtatgagctcaaacatatacatgattttagttagtccagataggctcttttgtcaccaagtccttttatgattgttttacaggtatattactgggtgttagccagcaatcttgtgctccgctgtacatggacgtacaagctttcagcacatcttcggcacaactacctgacagtgtttacaatagcagcgctggaaatattgaggcggtttcagtgggtgttcttccgtgtcgagaacgagtggaacaagatgacagccaagcagagtctggaaatgtcatctgacatgccctctgaaggagacaggcttttggattcaaatagtcatacagtatgaactacgaaccgcaggtctcatattttgtgataccgattcatcattcttttagtgacccttatagcccgattcaagtcgaaaattctgttttgtttgtagaggccaaaaggtcagggttacatgataggtttctataaaaattgatattcttggcacactacatatgcaatccttttggctatatatatatatatatatatatataccatttgtaatcccattgaatccaaagaggtgtttgttgacagttgacacatcaaagaggaatattaataccaaagatttt</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0595000, RefSeq:Os12g0595000