BGIOSGA008859

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Revision as of 03:22, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA008859| Description = Jmjc domain containing protein| Definition = Oryza sativa Indica Group BGIOSGA008859, complete gene.| tag = P0666E12....")
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Gene Name

BGIOSGA008859

Description

Jmjc domain containing protein

Definition

Oryza sativa Indica Group BGIOSGA008859, complete gene.

LocusTag

P0666E12.1

Ensembl Transcript ID

BGIOSGA008859-TA

Ensembl Protein ID

BGIOSGA008859-PA

Length

4864

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:30502283..30507146

Sequence Coding Region

30502283..30502538,30502903..30503059,30503143..30503362,30504165..30504218,30504287..30504366
,30504885..30505162,30505283..30505687,30505767..30506119,30506205..30506450
,30506772..30507146

Genome Context

<gbrowseImage1> name=IndicaChromosome02:30502283..30507146 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:30502283..30507146 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGGGAATGATGAAGTTGCCCTGAAACCTGTTTCATGCGGGGCAAGATTACGGAGGAGTTGTGATGCATCATTGAGGTTTGGAGGGTCCATGAGAGACCCTTTTTTGAAGCACAAAGTGAAGAAGTTTGATCTATCTAGCCTAGATTGGATTGATGAGATTCCGGAATGTCCTGTGTTTTCTCCATCAATAGAGGAGTTTGAGGATCCACTTGTTTATCTCAATAAAATTGCCCCTATCGCTGCAAAATATGGTATATGTAAGATTGTTTCACCTCTCTGCGCTTCTGTACCTATTGGGCCTGTACTTATGAAGGAACAAGGTGGACTTAAATTTACTACCAGGGTGCAACCTCTCCGCCTTGCTGAATGGTCCAAGGATGACAAGTTTGCTTTCTTCATGAGTGGAAGAAAGTATACATTTCGAGATTTCGAGAAGATGGCGAATAAAGAATTTGTTCGAAGATACTCAAGTGCTGCTTGTCTTCCACCAAGATATATGGAAGAAGAATTCTGGCATGAAATAGCCTTTGGCAAGATGCAGTCTGTTGAGTATGCATGTGATATTGATGGTAGTGCATTCTCTTCTTCTCCTAATGATCAACTGGGCACAAGCAAATGGAACTTGAAGAGACTTTCTCGGTTGCCGAAATCAACACTGCGTCTCCTCAGAGCAGCAATTCCAGGAATAACGGATCCAATGCTGTATATTGGGATGCTCTTTAGTATGTTTGCATGGCACGTGGAAGATCATTACTTATACAGCATTAACTATCATCACTGTGGGGCTTCAAAAACGTGGTATGGCATTCCAGGCAAAGCTGCTCCGGATTTTGAGAAAGTGGTATGTGAGCATGTGTACGATCATGAAATTTTATCAGGTGAAGGGGAAAATGCAGCATTTGATGTCATTTTGGGAAAGACTACAATGTTTCCTCCAAATATTCTGTTGCGTCATCATGTTCCTGTCTACAGAGCTATACAGAAACCTGGAGAGTTTGTTATTACGTTTCCCCGAGCTTATCATTCAGGTTTCAGCCATGGTTTTAATTGTGGCGAGGCAGTGAATTTCGCTATTGGAGAATGGTTTCCTCTGGGAGCACTTGCTAGTCAACGTTATGCACTTTTAAAGAGGACACCATTACTACCTTACGAGGAACTTCTTTGTAAAGAGGCGGCACTTCTTGATCATGAATTTTCTACCTGTGATTATAAAGATACAACAACATTAGCTGGAGAAACACACAGTCAACGCTGTATGAAAGTTCCTTTTGTTCAGTTGATGAGGGTCCAACATCGTATCCGTTGGTCCCTTATGAAAATGGGTGCTCGCACGCATTATAAAGCAGATATTGATGCCACAGTTCTGTGTGGAATATGTAGACGCGACTGCTACGTAGCCCACATTATGTGTAACTGCAGAATTGATGCGATTTGCCTTTGCCATGAGGAAGAGATTAGGAGATGCCCTTGCAGTTGTGATCGTGTTGTATTTGTGAGGAAAGACATATTTGAACTGGAGACATTATCAAAGAAGTTCGAGGAGGAAAGTGGAATACTGGATGCAGTCAAAAAGCAAATGGCTCGACATGATGGCACTAGTCAGCATTCTAACTTTTTCGATTGTACTGATCATGAAGCTGAGTACTACCCATACTGCAATATTCACATAGATCCATCCCCAGAAATATATAGCATTTCAGAGACAAATTTTGTTGGGTATGACTTGAACAATCCACATCCTGCTGCATCAACAGTAACATTTTCTTTTGTACCCCATGAGTATTCTACACAAAGTGATGAGTGTACAAGTTCTAACAGAAGAGCCTTGTCTAGCTCTTGTCTCGAGAATACAATTACCCCTGAAAATGCAATTAGTAATGCTTGCCAGTTATCTACTCCTGATCAAACATGTCTGTCTGACAAATTGGCTGCACATGATACTGATGATTCTGACTGTGAGATATTTAGAGTAAAGAGAAGATCTGGCCTAACTCCTGAGAAAAGACACATGGAAGATGGAACAACAAATTTCACTGGGAATCAGGTATTGAAACGGCTGAAGAAAATTAATGCACATGACAGACAAGAACATAAGTTACCTGAACTATCCTGTGGTGCAAGGAGTGAACCTGTCCATACTGATGATTGTATACATTGTGTTGACTTCATTTCTGAAAATGGAGACGACTTCATAGCTCCAACCAAATTGAAGATGATACATCAACTAGATGCAAATATTGTTGAGGATGAAGTTGCTTCCAGCCAGAAATATAATAGTTGCAACTACCAATCTCCATCTATAGAGCTTGGGCCAAAACGCTTGAAAATTCGTGGCCCATCTTTTCCCAGCAGGATTTCTGAGCTGGAGGTATCTTGTAGATTCCAGGACAATGACTTGGGCAGCCAGCATGCTCGATGA</cdnaseq>

Protein Sequence

<aaseq>MAGNDEVALKPVSCGARLRRSCDASLRFGGSMRDPFLKHKVKKFDLSSLDWIDEIPECPVFSPSIEEFEDPLVYLNKIAPIAAKYGICKIVSPLCASVPIGPVLMKEQGGLKFTTRVQPLRLAEWSKDDKFAFFMSGRKYTFRDFEKMANKEFVRRYSSAACLPPRYMEEEFWHEIAFGKMQSVEYACDIDGSAFSSSPNDQLGTSKWNLKRLSRLPKSTLRLLRAAIPGITDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGKAAPDFEKVVCEHVYDHEILSGEGENAAFDVILGKTTMFPPNILLRHHVPVYRAIQKPGEFVITFPRAYHSGFSHGFNCGEAVNFAIGEWFPLGALASQRYALLKRTPLLPYEELLCKEAALLDHEFSTCDYKDTTTLAGETHSQRCMKVPFVQLMRVQHRIRWSLMKMGARTHYKADIDATVLCGICRRDCYVAHIMCNCRIDAICLCHEEEIRRCPCSCDRVVFVRKDIFELETLSKKFEEESGILDAVKKQMARHDGTSQHSNFFDCTDHEAEYYPYCNIHIDPSPEIYSISETNFVGYDLNNPHPAASTVTFSFVPHEYSTQSDECTSSNRRALSSSCLENTITPENAISNACQLSTPDQTCLSDKLAAHDTDDSDCEIFRVKRRSGLTPEKRHMEDGTTNFTGNQVLKRLKKINAHDRQEHKLPELSCGARSEPVHTDDCIHCVDFISENGDDFIAPTKLKMIHQLDANIVEDEVASSQKYNSCNYQSPSIELGPKRLKIRGPSFPSRISELEVSCRFQDNDLGSQHAR</aaseq>

Gene Sequence

<dnaseqindica>1..256#621..777#861..1080#1883..1936#2005..2084#2603..2880#3001..3405#3485..3837#3923..4168#4490..4864#ATGGCGGGGAATGATGAAGTTGCCCTGAAACCTGTTTCATGCGGGGCAAGATTACGGAGGAGTTGTGATGCATCATTGAGGTTTGGAGGGTCCATGAGAGACCCTTTTTTGAAGCACAAAGTGAAGAAGTTTGATCTATCTAGCCTAGATTGGATTGATGAGATTCCGGAATGTCCTGTGTTTTCTCCATCAATAGAGGAGTTTGAGGATCCACTTGTTTATCTCAATAAAATTGCCCCTATCGCTGCAAAATATGGTACAGTTTCTTCTTTTTGTTCTTTCGCGATATTTTTCTCAGTTGCAAGGTCAATGGTGTAGCAGTGATTTTAGTCAGGGCATTGATAATTTGGCAAAGGTGGTACTATGATTTTTTGAAATCAAGGTATTGGCAAACGCGAAAGCCTCTTCAATTGCAAGTCACAAGTGCAATATAGTACAGTTAATTACTGAGTTTTGTGTGACCTCCTGGAAATAGATGAGCCATGCATGGAAAACTGCATTGCCTAAGAAAATCTTTTTGTCAGTGGTGGAAGTCTCTAGCCTAGATTTTTTCACTTATTTATTGTCTTCACTCAGGTTTCTGTGGTTATTATATTGCTGAGACTATTTAAATTTACCAGGTATATGTAAGATTGTTTCACCTCTCTGCGCTTCTGTACCTATTGGGCCTGTACTTATGAAGGAACAAGGTGGACTTAAATTTACTACCAGGGTGCAACCTCTCCGCCTTGCTGAATGGTCCAAGGATGACAAGTTTGCTTTCTTCATGAGTGGAAGGTCTGTTAGTCTATTATTACTGCATTGCTGTTTAATAAGTGTTTTTATTTATATTTGGATGTCATGTGAATATGTATCATCAGAAAGTATACATTTCGAGATTTCGAGAAGATGGCGAATAAAGAATTTGTTCGAAGATACTCAAGTGCTGCTTGTCTTCCACCAAGATATATGGAAGAAGAATTCTGGCATGAAATAGCCTTTGGCAAGATGCAGTCTGTTGAGTATGCATGTGATATTGATGGTAGTGCATTCTCTTCTTCTCCTAATGATCAACTGGGCACAAGCAAATGGAACTTGAAGGTATTTCCTTGTTTCCTTTTACAAGGCCTATATTTTTTTTCTCTATTTGCAAAATACAAGAGTTGCAAGTGAATATATTGACTCTTTTGCCTGTTTTCCCACAATTATTACATAATCTCTCCTGCATTTATAAGAAGAATCTCACTAACCATCTCCTTGCCTATTTCCAAGGTGCTCCCTCCTTCCCAAAACATAGGAGTGTTTTCGATGAATTAAGGATTTTGGTGAAAGGTTTAAATGGCTCACTAATACATGGTGGGGTGATGGCCATTAATAATAGTATTGGGTTGGGTGTGGGATGGTGGGGTCCACTATGGGTAAAATTCACCTTTTACATGTCCTAGGTAGCTATATTCGGGACAATATTTGAACTAAAGGTAATATTTTTGGACGGAGGGGGTATTTAAGTATGGGTAGCATGGTCATTTTAACAATTTAACTCATGTACTCTTAGGTTTGAACCTTCCTTAATCATTGTGCCCACTCAAAATAAGCCTTATATTTTGAAATGGAGGGAGTAGTTCTTTTGTTTACCAGTTTGGGAGACATATTTGAGTAATGAAACGACTGCACTCTGTGCTTCCCAAGTTCTGTGCTATTTTTCTGCGTGGTTGCATTTGGCATGAGCGTTCACATAACCAACTGCACACTTGCAATATCCTCACTCTTGCAATTAAATCTTACCCAAGTATAAGTGTCCATATCCTGCTATGGTAATTTGCATCATTAGAGGATCTTATCTATCACATTTGCTATATTGAACTATTGGCATGTTAAAAAGTTAATTCTTGCTTTGATCCAGAGACTTTCTCGGTTGCCGAAATCAACACTGCGTCTCCTCAGAGCAGCAATTCCAGTAAGTGGACTGTATTGATGATTTCCCATTATTTTTTATACCTTTATTTATCTTCTGTGTTTTTTTAGGGAATAACGGATCCAATGCTGTATATTGGGATGCTCTTTAGTATGTTTGCATGGCACGTGGAAGATCATTACTTATACAGGTGCATGATTAATATTTGCATCATATTTCTGTGGGAATGGATTTTAATCCCTTGAGGGGATGTTCCCTCGTACACCTTTTTCTCTCAAATTCAATGCAAATGGTTGTGAAAAAAATCTAGAAAAATTTGACAAATGTAGAGCATAGTGACATCTATCATTCCACCAAAAAATCAAGTTAAAACTCAATCTACACATTGAGAAACAAAAAGGACAAATTCAGGTGTGAATAGTGCCAATACTGTTCATACGCTGGATTTTCTTTTTAAATATCGATGTGTGAGTTGCGTTTAGACCTAAGATTTTGTGGAATAGTGTATATAGATATATATTGTATGAATGTTGTCATTTTTTTTTTGAGATTTTTCCATAACTATTTGGATGGTGTTTGAACAAATGAGGGACATACCCTTGAGGGGCTAAAAGAGTTTCCCATATTTCTGCTACCTATTCTTTTCGCAGTGCTGCACATTAAATTGAAATTTTCTATTTGTTATAATGTGAGTAAATGTTTTGCCAGCATTAACTATCATCACTGTGGGGCTTCAAAAACGTGGTATGGCATTCCAGGCAAAGCTGCTCCGGATTTTGAGAAAGTGGTATGTGAGCATGTGTACGATCATGAAATTTTATCAGGTGAAGGGGAAAATGCAGCATTTGATGTCATTTTGGGAAAGACTACAATGTTTCCTCCAAATATTCTGTTGCGTCATCATGTTCCTGTCTACAGAGCTATACAGAAACCTGGAGAGTTTGTTATTACGTTTCCCCGAGCTTATCATTCAGGTTTCAGCCATGGTGAGGTTTCGTTACATCTACAATTCTAAATGCTGTCAGTGATATCTTTATTTAACTGTTGGATATCTCAATATTATATTTCATTTAATGAACATTGTAAAATGCAAAAACAACTACCAGGTTTTAATTGTGGCGAGGCAGTGAATTTCGCTATTGGAGAATGGTTTCCTCTGGGAGCACTTGCTAGTCAACGTTATGCACTTTTAAAGAGGACACCATTACTACCTTACGAGGAACTTCTTTGTAAAGAGGCGGCACTTCTTGATCATGAATTTTCTACCTGTGATTATAAAGATACAACAACATTAGCTGGAGAAACACACAGTCAACGCTGTATGAAAGTTCCTTTTGTTCAGTTGATGAGGGTCCAACATCGTATCCGTTGGTCCCTTATGAAAATGGGTGCTCGCACGCATTATAAAGCAGATATTGATGCCACAGTTCTGTGTGGAATATGTAGACGCGACTGCTACGTAGCCCACATTATGTGTAACTGCAGAATTGATGCGATTTGCCTTTGCCATGGTAAGATTGTAGTAACACCAAGTGTTGATATTGGCTTTATTTGAGTTCATCATTTTTACTTGTTTACCTTGTTTTGAAGAGGAAGAGATTAGGAGATGCCCTTGCAGTTGTGATCGTGTTGTATTTGTGAGGAAAGACATATTTGAACTGGAGACATTATCAAAGAAGTTCGAGGAGGAAAGTGGAATACTGGATGCAGTCAAAAAGCAAATGGCTCGACATGATGGCACTAGTCAGCATTCTAACTTTTTCGATTGTACTGATCATGAAGCTGAGTACTACCCATACTGCAATATTCACATAGATCCATCCCCAGAAATATATAGCATTTCAGAGACAAATTTTGTTGGGTATGACTTGAACAATCCACATCCTGCTGCATCAACAGTAACATTTTCTTTTGTACCCCATGAGTATTCTACACAAAGTGATGTAAGTCTCATTCCTGTGCTTATTCTAATGTTTATTTACTGTTTTTAGCAACTAAAAAGAAACTGATATTATTTTATATGTGCAGGAGTGTACAAGTTCTAACAGAAGAGCCTTGTCTAGCTCTTGTCTCGAGAATACAATTACCCCTGAAAATGCAATTAGTAATGCTTGCCAGTTATCTACTCCTGATCAAACATGTCTGTCTGACAAATTGGCTGCACATGATACTGATGATTCTGACTGTGAGATATTTAGAGTAAAGAGAAGATCTGGCCTAACTCCTGAGAAAAGACACATGGAAGATGGAACAACAAATTTCACTGGGAATCAGGTACAGATATTTCTGTGGGTGCTTCTCATAAGATGATTAAAAATGCTTACTCTCCTAAAAGTAGATGTGGTATAGTATGTTTGCAGTTAGTGTGTACTTGCGAAAATTCAACAGTCTATACTAACGTTTCATGTCTCTTTACCTTCTCCAAAGAAATACAAATGTGACTGAAGTGCTGAACTTCATTCCAGAAAGTGCTTAGAAATTGGTTACTTAATCTTACAAACTAGATCAAGGTGAATTCGCAGGGGCATGATTGAGGTGAACTGAAAAGTGCTTACAAGATGCTTCTGATAGACACCTTCTTGTTCCTTGTGGCAGGTATTGAAACGGCTGAAGAAAATTAATGCACATGACAGACAAGAACATAAGTTACCTGAACTATCCTGTGGTGCAAGGAGTGAACCTGTCCATACTGATGATTGTATACATTGTGTTGACTTCATTTCTGAAAATGGAGACGACTTCATAGCTCCAACCAAATTGAAGATGATACATCAACTAGATGCAAATATTGTTGAGGATGAAGTTGCTTCCAGCCAGAAATATAATAGTTGCAACTACCAATCTCCATCTATAGAGCTTGGGCCAAAACGCTTGAAAATTCGTGGCCCATCTTTTCCCAGCAGGATTTCTGAGCTGGAGGTATCTTGTAGATTCCAGGACAATGACTTGGGCAGCCAGCATGCTCGATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA008859

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA008859&oldid=62411"