BGIOSGA009174

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Revision as of 03:27, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA009174| Description = Glutamate receptor| Definition = Oryza sativa Indica Group BGIOSGA009174, complete gene.| tag = OsI_09220| tid = BGI...")
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Gene Name

BGIOSGA009174

Description

Glutamate receptor

Definition

Oryza sativa Indica Group BGIOSGA009174, complete gene.

LocusTag

OsI_09220

Ensembl Transcript ID

BGIOSGA009174-TA

Ensembl Protein ID

BGIOSGA009174-PA

Length

6293

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:35578353..35584645

Sequence Coding Region

35578353..35578641,35579927..35579973,35581366..35582523,35582962..35583274,35583594..35584645

Genome Context

<gbrowseImage1> name=IndicaChromosome02:35578353..35584645 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:35578353..35584645 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGAGGCGGTCCTGCTTCTTCTTCCTCCTCCCGCTCCTGGTTGCGGCGCTCGCGGGGAGCCCGGTGGTCACAGCCCAGCGGAATGCGCTGCCGGCGGCGGCGGCGGCGGCGGCGAGCGTCCGGGTCGGGGTGATCCTGAACTTGACGTCGGCGGTCGGGGTGAGGCGGCGGGTCGGCATCCAGATGGCGGTGGAGGACTACTACGCCGCGAACCCCGGGTCGGCGACGAGGGTGGAGCTCCATTTCAGGGACTCGGCCGGGGACGTCCTCCCCGCCGCTTCCGCCGCTGACAACGATATTGAGAAGATTTTAGCTGAAGATGCAGACGTCTGTACGCCGTTCTTCGTGCGCGCCGCCGTCAACGACTCCTTCCAGGCCGCGCCCGTCGCCGCCGTCCTCGACGCCTTCCGCTGGCGCGCCGCGGCCGTCGTGTACGAGGACTCGCCGTACGGGAGCGGCATCCTCCCGGCGCTCGCCGACGCGCTGCAGGGCGCCGGCGCCAAGATCATGGACCGCACGGCGGTGCCCGTCGACGCCACCGACGACCGCCTCGACGCGCTGCTGTACCGCCTCAGGGCGATGCCGACGCGCGTGTTCGTCGTGCACATGCTCCACAACGTCGCCGGGAGGCTGTTCCGCCGCGCGAAGATGCTCGGCATGATGTCCGACGGCTACATCTGGGTGGCCACCGACGGCGTCGCCACGTTCATGGACAGGTTCTCCCCGGAGGAGGTCGACGCGATGCAGGGCGTGGTCAGCCTCCGGCCGTACGTGCAGGAGACCGACGCCGTCAAGAACTTCTCGGCGCGGTTCAAGGCGAGGCTACGCCGGGATCACCCCACCGTCGACGATGTCCGTGAGCCGACCGTCCTGAGGTTCTGGGCGTACGACACGGCGTGGGCGATCGCCGCGGCGGCGGAGTCGGCCGGTGTCGCCGGCCCGGCGTTCCAGACACCGCAGACGAGCGCGCCACTGACGGACCTGGACCGGCTCGGCGTGTCGGCCACCGGCACGGCGCTCCTCAAAGCCGTCCTGAGCACGACGTTCGACGGGCTCGCCGGCAAGTTCAGGCTCGTCGACGGGCAGCTCCAGCCGCCGGCGTACGAGGTCGTGAACATCATCGGCAAGGGCGTCAGGACGGTCGGGTTCTGGACGCCGGAGTTCGGGATCACGCAAGACCTGAACGCCGGCAGCGCCAAGACGCTGAGGCAAATCCTCTGGCCCGGCGAGCCGCGCGACACGCCGAGAGGCTGGACCGTGTCGCCGAGCGGGCTGCCGCTCCGTGTCAGCGTGCCGACGAAGCGGGGCTTCACGCAGTTCGTCGACGTCGGCAACGTCACGGCGACCGGGCGGCGAAACATCACCGGCTACTGCATCGACGTGTTCGACGAGGTCATGAAGATTATGCCCTATCCGGTGAGCTACGTGTACGACCCTTACCCCGATAGCCCGGAATCTTACGAGAAGCTCGTCGACCAGGTGTCGTCACAGAAGGCAGATGCGGTGGTGGGGGATGTGACGATCACGGCGAGCAGGATGGAGGAGGTGGACTTCACGATGCCGTTCACGGAGTCGGGGTGGTCGATGGTGGTGGCGGTGCAGAAGGAGACGAGCACGAGCATGTGGATCTTCCTGCAGCCGCTCACCACCAGCCTCTGGCTCGCCAGCCTCGCCTTCTTCTGCTTCACCGGCTTCGTCGTCTGGGTGATCGAGCACCGCATCAACGAGGAGTTCCGCGGCACGCCATGGCAGCAGTTCGGCCTCATCTTCTACTTCTCCTTCTCCACCCTCGTCTTCTCCCACAAGGAGAAGCTGGAGAGCAACCTGTCGAGGTTCGTGGTGATCATATGGGTGTTCGTGGTGCTGATACTGACGTCGAGCTACACGGCGAGCCTGACGTCGATGCTGACCGTCCAGAAGCTGCAGCCGACGGTGACCGACGTGAGGGAGCTCCTGAGGCGAGGCGACTACATCGGGTTCCAGGAGGGGACCTTCATCGTGCCGGTGCTCGAGAAGATGGGCTTCGAGGGGAGGATGAGGAGCTACAGCACGGTGGACCAGTACGCCGACGCGCTGTCCAAAGGCTCGGCGAACGGCGGCGTCGCCGCCATCTTCGACGAGATCCCCTACCTCAAGCTCTTCCTCTCGCAGTACTGCAACGGCTACACCATGGTCGGACCAATCTACAAGACCGACGGCTTCGGGTTCGTGTTCCCGAGAGGGTCGCCGATGGTGGCGGACGTGTCGCGGGCGATCCTGACGCTGGCGGAGGGGGAGAAGATGGCGCAGATCGAGAAGAAGTGGTTCGGCGAGCCCGGCGCGTGCCAGAGCCAGGGCAGCGCCGTCGGCTCGTCGAACCTCAGCTTCCGGAGCTTCGGTGGGCTGTTCCTCATCACCGGCGTGGTCACCAGCGCCATGCTCCTCATCTACCTCGCCGTCTTCTTCTACCGCGAGCGCGACGAGCTCCGTGCGGCGGAGGCGGCCGCCGCCGCCTCCGGCTCCGGCTCCGGCTCCGGGAGCCGGTCGCTGCGGCGGCTGCGCGCGTGGGCGCGGCACTACGACCAGAAGGACCTCAAGTCCCCGACGTTCAAGAGGAGGTGGAGCGACGAGTCCGTGAGGAATGGCAGCGAGTACGCCGCGAGCCGGACGCCGAGGTGGGGCGACGAGAGCCCGTGCAACGTCGCCGGCGCCGCCGACGCCGGACGGATCCCGGAGGAAGTCGTCGGCGGCATGAGCCCGTTCAGCATCTCCACGAGCTCGGAGGAGAGGAACGGCGCCGTGTCTCCGGCGGCGGCGGAGTTCAATAACTCGTCCGATCGGGCAGCGGTGGTGGCGGGAACATCTCAACCGCGGTAG</cdnaseq>

Protein Sequence

<aaseq>MARRSCFFFLLPLLVAALAGSPVVTAQRNALPAAAAAAASVRVGVILNLTSAVGVRRRVGIQMAVEDYYAANPGSATRVELHFRDSAGDVLPAASAADNDIEKILAEDADVCTPFFVRAAVNDSFQAAPVAAVLDAFRWRAAAVVYEDSPYGSGILPALADALQGAGAKIMDRTAVPVDATDDRLDALLYRLRAMPTRVFVVHMLHNVAGRLFRRAKMLGMMSDGYIWVATDGVATFMDRFSPEEVDAMQGVVSLRPYVQETDAVKNFSARFKARLRRDHPTVDDVREPTVLRFWAYDTAWAIAAAAESAGVAGPAFQTPQTSAPLTDLDRLGVSATGTALLKAVLSTTFDGLAGKFRLVDGQLQPPAYEVVNIIGKGVRTVGFWTPEFGITQDLNAGSAKTLRQILWPGEPRDTPRGWTVSPSGLPLRVSVPTKRGFTQFVDVGNVTATGRRNITGYCIDVFDEVMKIMPYPVSYVYDPYPDSPESYEKLVDQVSSQKADAVVGDVTITASRMEEVDFTMPFTESGWSMVVAVQKETSTSMWIFLQPLTTSLWLASLAFFCFTGFVVWVIEHRINEEFRGTPWQQFGLIFYFSFSTLVFSHKEKLESNLSRFVVIIWVFVVLILTSSYTASLTSMLTVQKLQPTVTDVRELLRRGDYIGFQEGTFIVPVLEKMGFEGRMRSYSTVDQYADALSKGSANGGVAAIFDEIPYLKLFLSQYCNGYTMVGPIYKTDGFGFVFPRGSPMVADVSRAILTLAEGEKMAQIEKKWFGEPGACQSQGSAVGSSNLSFRSFGGLFLITGVVTSAMLLIYLAVFFYRERDELRAAEAAAAASGSGSGSGSRSLRRLRAWARHYDQKDLKSPTFKRRWSDESVRNGSEYAASRTPRWGDESPCNVAGAADAGRIPEEVVGGMSPFSISTSSEERNGAVSPAAAEFNNSSDRAAVVAGTSQPR</aaseq>

Gene Sequence

<dnaseqindica>1..289#1575..1621#3014..4171#4610..4922#5242..6293#ATGGCGAGGCGGTCCTGCTTCTTCTTCCTCCTCCCGCTCCTGGTTGCGGCGCTCGCGGGGAGCCCGGTGGTCACAGCCCAGCGGAATGCGCTGCCGGCGGCGGCGGCGGCGGCGGCGAGCGTCCGGGTCGGGGTGATCCTGAACTTGACGTCGGCGGTCGGGGTGAGGCGGCGGGTCGGCATCCAGATGGCGGTGGAGGACTACTACGCCGCGAACCCCGGGTCGGCGACGAGGGTGGAGCTCCATTTCAGGGACTCGGCCGGGGACGTCCTCCCCGCCGCTTCCGCCGGTAAGCTCGCCGCCTCTCCCATTCCTTGCTCGAACTAATCAACTAACTAATGATGCTTAGACTACTACTAGTACTAATTTATTACGACGCCTAGTTTGTTTGACGGCTTGAATGGATAGTTCGCAGCGATTTCCTAGAATCAATTGCTGATGGCCTGATTAGCTATGCTCTGCTCTGCTCATATGTGGGTGAATTTGCACAAAACGTCGAAAATATCTGCAAATTTAAGGAGTTTTTTTGTTCGTTTTATATAGTCGCGTGTGGGTTTGAGTCCTTTGTAATCCGAGCCAGTAGATGTTGTTCGTACGTATATGTCTGCATCGCATGATGCATAAGCATCTTGATGCAGATGATGCAAAAAAAAAAAAAGCTTCATAGCTGCCATTGTCATGTTGTATTGTCAACTGTGCTCCTGAAATTATGTAGATATGTACGTTCTTTTGTTTGGCTGTCGCTGATACTCCCTTCTATCAGAATAGTTTCTCTTGAAAACGTTGAATTAAAACCCTTATTAAGCTTTTGCAATGATATGCTCGCATGCAAAGGGTCTTCTTGTCTTCCTTGATGCTGACCCAACTGATGTTGTCAAGAGAATATGCCACCTTGTCTTCAAATCAACGCCGGAACAGGAGGACAGATTAGACATTAATTAATTGTTTTTGGTAATCCCATTTCTGTATTAGGATCTCAGCTAATCAGTCTTATATTGTTCTGACATTTCTAACCTCGAATCCACTAGTCATAGACCCCCAACTCTCACGTACAATTGTATATACTATCAGTTTTGTCAGAGTAGATACGTGTCTATATGAGATATGCTTGTTTAGAGACCTCCATTGCTACTTGTCTACAATATGCTACAGCTCCATGCATGATGCATGTTGCCTTCTAATTTGTTTAATCACTTCGAGTTGGACTAGTAGTCATCTCTACCCATTAAAATCACGATGGCACGTACCAACGATTTGGTCCGGTTTATGGTGTTCAAACCAGGCTTGATTTGAGTCAAGTGTCAAGTACACGAAATCTTGATGCTTGAATTGTTTAGCTGGTCACAAGTTCTATATAAAGTCTTCCTCGAAATAAATTGTCTCGTCACAAAATGTCAGTGGCCATGAAGGACATGACGATTATATTAATAAAATTTAAGGATGCGAAGAGGACGTTTTAAAATGTCAATCCCTTTCGTTGCTGACCTAAAACTCTCGCATACGTCCTTAAGTTGTAAAACTGAATCTAATTTCCGAATGTAAGCAGATAATTCTAACCAAGTAACTTCGATCAGCTGACAACGATATTGAGAAGATTTTAGCTGAAGATGCAGACGTCTGTGTGAGTATGTGTAGTGTAGGGATAAGAGAAACCTGTGCCATTTGCGCGTTTTGCGCGATCGGATTTGGACGACGTGGAGTTCTGAATTTTCCAAAGCGTGTGGAGTGAGGCCATTGGCTCCAGCATAGACCATAGACTTACTGTAGAGATGGTCAAGTGCAGTTTTTAATGGCCCTGAAAAAATGCCATAATTTGTATAGATATACAAGGTCCTTTTCAGTTTGTGACAAGTCGTTCTTTTGTCTATTAGTATCACATGTCAGCACCCAGCAGTAGCATTCATGAAAACTGTGTAGTGTACACTGTACCATTGCTTCTACTGTACTCCTAAGTTCTAACTGGAGTAGAATTATCTGGTAGGGTAATATTATGAGTCATCGTATGATCAAGACTGCCAATTGTGTTAGTGTATAATTATCTGGTAGGGTAATATTAGTGTAGACTGTGTATTATCAGGAGGACTGAAGGAACAAAATGGAATCGTAGTTGCAGTCCAGTCACCCCAGACTCTGCTTTGCACCTAAGCTACTCCCTCCGTCCCATAATATAAGAGATTTTGAGTTTTTGTTTGCACTATTTGACCACTCGTCTTATTTAAAAAAAATTAGAATTATTATTTATTTATTTTGACTTACTTTATTATCTAAAGTACTATAAACACAACTTTTCATTTTTTATATTTGCACAAATTTTTTGAATAAGACAAGTGGTCAAACAATGCAAACAAAAAACTCAAAATCCCTTATATTATAGAACGGAGGGAGTACCATTTTTGCCTGATCTGGTCTAAATCTGGGTCAAGGAACGTCTCACCGAAAGAAGAACTTGTGTTCTTTCTTTAGGTTTTGATGCCCAATATCTGTTCATACCAATTTGTTCAAATCAAGCATCGAACCCCACTGAATAGTTGCTTTTGTTTTGATTCTTCTGTTATGTAGAGTTGTTCATCTTTTAAGATTTTTTTTTTTAAAAAAGAAAGCCATATCAATGAAATGATCTAATTTCGAAAAAAATAACTGATTAGAATGCTAGAAATGACTTGACTTCGCACCAGTAATCAATAATAAGTGATATGCATCAAGTTGATTAATGATGCAATAAACGGTATCAAAACTCTTTTCACAATTGATAGTCTCAAGAACTGTCAGATTAGAAGCTGAAATAACTGTCAGATCAACAACTTTCATACTTGATAGTCTCAACTGCGAAATTCTTGGCTCCAATTTCTGAGCGGCTGCTCGTTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTGTCCTACTCCGGCACCTCGCCGTCGCTGTCCCCCGCGCAGACGCCGTTCTTCGTGCGCGCCGCCGTCAACGACTCCTTCCAGGCCGCGCCCGTCGCCGCCGTCCTCGACGCCTTCCGCTGGCGCGCCGCGGCCGTCGTGTACGAGGACTCGCCGTACGGGAGCGGCATCCTCCCGGCGCTCGCCGACGCGCTGCAGGGCGCCGGCGCCAAGATCATGGACCGCACGGCGGTGCCCGTCGACGCCACCGACGACCGCCTCGACGCGCTGCTGTACCGCCTCAGGGCGATGCCGACGCGCGTGTTCGTCGTGCACATGCTCCACAACGTCGCCGGGAGGCTGTTCCGCCGCGCGAAGATGCTCGGCATGATGTCCGACGGCTACATCTGGGTGGCCACCGACGGCGTCGCCACGTTCATGGACAGGTTCTCCCCGGAGGAGGTCGACGCGATGCAGGGCGTGGTCAGCCTCCGGCCGTACGTGCAGGAGACCGACGCCGTCAAGAACTTCTCGGCGCGGTTCAAGGCGAGGCTACGCCGGGATCACCCCACCGTCGACGATGTCCGTGAGCCGACCGTCCTGAGGTTCTGGGCGTACGACACGGCGTGGGCGATCGCCGCGGCGGCGGAGTCGGCCGGTGTCGCCGGCCCGGCGTTCCAGACACCGCAGACGAGCGCGCCACTGACGGACCTGGACCGGCTCGGCGTGTCGGCCACCGGCACGGCGCTCCTCAAAGCCGTCCTGAGCACGACGTTCGACGGGCTCGCCGGCAAGTTCAGGCTCGTCGACGGGCAGCTCCAGCCGCCGGCGTACGAGGTCGTGAACATCATCGGCAAGGGCGTCAGGACGGTCGGGTTCTGGACGCCGGAGTTCGGGATCACGCAAGACCTGAACGCCGGCAGCGCCAAGACGCTGAGGCAAATCCTCTGGCCCGGCGAGCCGCGCGACACGCCGAGAGGCTGGACCGTGTCGCCGAGCGGGCTGCCGCTCCGTGTCAGCGTGCCGACGAAGCGGGGCTTCACGCAGTTCGTCGACGTCGGCAACGTCACGGCGACCGGGCGGCGAAACATCACCGGCTACTGCATCGACGTGTTCGACGAGGTCATGAAGATTATGCCCTATCCGGTGAGCTACGTGTACGACCCTTACCCCGATAGCCCGGAATCTTACGAGAAGCTCGTCGACCAGGTGTCGTCACAGGTCAGTACATGCCAAAGTTCAAGAGTTCTTGAGACAATCTGTTCGTTTGATTTGTTCGATCAGAGGGACGTGGATTTTCACCCACTCGTTGTTTACATATTATCTAAATAGTTAGCAATTTTTTTTAAAAAAAATGATAACATGGTTGAATATGAAATATATCACTCCACAAACATGCAATATCAAATTCGATTTTTGTTAGTTGAAAAAAACAAATTAAATTGAAAATAGTTGTAGCTCATTCACATATGTATTTGTTATTTTTGTTGCAACTTGTAGAAGCTAAATTTTAACTGCATGTTTGTGGAGTGATATATTTAATACTAATCTATATTGCCAATTTTTTTAAAAAAAATTATAACTATTTAGATGAAATATACGAAGCATGAAATCACTTTACCCGATCAGAGTGGTTGAATTGCAATGTTTGGTTTGCAGAAGGCAGATGCGGTGGTGGGGGATGTGACGATCACGGCGAGCAGGATGGAGGAGGTGGACTTCACGATGCCGTTCACGGAGTCGGGGTGGTCGATGGTGGTGGCGGTGCAGAAGGAGACGAGCACGAGCATGTGGATCTTCCTGCAGCCGCTCACCACCAGCCTCTGGCTCGCCAGCCTCGCCTTCTTCTGCTTCACCGGCTTCGTCGTCTGGGTGATCGAGCACCGCATCAACGAGGAGTTCCGCGGCACGCCATGGCAGCAGTTCGGCCTCATCTTCTACTTCTCCTTCTCCACCCTCGTCTTCTCCCACAGTACGTGCTTGCATCCTCCTTTTCTTCTCTTCTCTAGCTCATTTCTACTCCCTCCATCTCTAAATATTTAACGCCGTTAACTTTTTTAAGCATGTTTAATCGTTTGTCTTATTCAAAAACTTGAGTAGTAGTATATTTAACAATGAATCAAATGATATGAAAATAATTAATAATTACTTAATTTTTTAAATAAGACGAATGGTCAAACATGTTTAAAAAAGTGAACGGTGTTAAATATTTAGGGATGGAGGGAGTACTTTCTACTACCAATTCAGCAACATGATTTTTGAGTGGCGATTTCAATTGTGTGTTTTTTTAGAGGAGAAGCTGGAGAGCAACCTGTCGAGGTTCGTGGTGATCATATGGGTGTTCGTGGTGCTGATACTGACGTCGAGCTACACGGCGAGCCTGACGTCGATGCTGACCGTCCAGAAGCTGCAGCCGACGGTGACCGACGTGAGGGAGCTCCTGAGGCGAGGCGACTACATCGGGTTCCAGGAGGGGACCTTCATCGTGCCGGTGCTCGAGAAGATGGGCTTCGAGGGGAGGATGAGGAGCTACAGCACGGTGGACCAGTACGCCGACGCGCTGTCCAAAGGCTCGGCGAACGGCGGCGTCGCCGCCATCTTCGACGAGATCCCCTACCTCAAGCTCTTCCTCTCGCAGTACTGCAACGGCTACACCATGGTCGGACCAATCTACAAGACCGACGGCTTCGGGTTCGTGTTCCCGAGAGGGTCGCCGATGGTGGCGGACGTGTCGCGGGCGATCCTGACGCTGGCGGAGGGGGAGAAGATGGCGCAGATCGAGAAGAAGTGGTTCGGCGAGCCCGGCGCGTGCCAGAGCCAGGGCAGCGCCGTCGGCTCGTCGAACCTCAGCTTCCGGAGCTTCGGTGGGCTGTTCCTCATCACCGGCGTGGTCACCAGCGCCATGCTCCTCATCTACCTCGCCGTCTTCTTCTACCGCGAGCGCGACGAGCTCCGTGCGGCGGAGGCGGCCGCCGCCGCCTCCGGCTCCGGCTCCGGCTCCGGGAGCCGGTCGCTGCGGCGGCTGCGCGCGTGGGCGCGGCACTACGACCAGAAGGACCTCAAGTCCCCGACGTTCAAGAGGAGGTGGAGCGACGAGTCCGTGAGGAATGGCAGCGAGTACGCCGCGAGCCGGACGCCGAGGTGGGGCGACGAGAGCCCGTGCAACGTCGCCGGCGCCGCCGACGCCGGACGGATCCCGGAGGAAGTCGTCGGCGGCATGAGCCCGTTCAGCATCTCCACGAGCTCGGAGGAGAGGAACGGCGCCGTGTCTCCGGCGGCGGCGGAGTTCAATAACTCGTCCGATCGGGCAGCGGTGGTGGCGGGAACATCTCAACCGCGGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA009174