BGIOSGA014117

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Revision as of 03:53, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA014117| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA014117, complete gene.| tag = OS04G06...")
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Gene Name

BGIOSGA014117

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA014117, complete gene.

LocusTag

OS04G0672200

Ensembl Transcript ID

BGIOSGA014117-TA

Ensembl Protein ID

BGIOSGA014117-PA

Length

4797

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33414132..33418928

Sequence Coding Region

33418890..33418928,33417411..33418375,33417088..33417329,33416921..33417000,33416604..33416732
,33416405..33416500,33414710..33415856,33414367..33414564,33414132..33414274

Genome Context

<gbrowseImage1> name=IndicaChromosome04:33414132..33418928 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:33414132..33418928 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATAGCGAGAACTGCTATTTGTGCCGTTTTGAGATGGAACTGAGCTATCCCATGGCATCACCACAAGAATCCAATTCCTTGTGCTTGAAGCGCAAGCTTGTTGATGACTGCCTGTCAAAAGAGTGCAAGTCTCGTCGCATCAAAACTGAGAAGGGACCATCATCTGATTCATCTGCCAAGCGCTGCAAATGCTGTTGCACTCGACCTAACCTTGCCAGTGATTGTGTCAATTACCTAAAAAGTGGAGTGCCCAGCCGTGTTATGTTTTACAAACAGGGTTCTTGGCACAATTTTCCTGAGCAGATAATGAAGTCTCTCATTGAAGAATTTAGAAGCAATAAATCTAGTGTTGTTGCTGTGATGGACGATGAGCCTGTTCTTGTTGATTTCTTGTCGATGACCCTGGTCAACCTAAAATCTAGAAAGCAGCGGTCTGTGGCATGGTTTGATGACACTGGGAAGTGCTTTTATCCTTCTCTATTCTTTGATGAGGAAGCTGATGAAGTGGCTAAAGTAGGCGGTGATTTTGAGGGCACCACACAGGGAATAATGTTGGATAAGGTTGCAAATTCTCCACCAGAAGTGGTGAAGCAAGTTGTCCTTGAATCTAGTCCTCCAGTTCCACAGAAGCCTGCCACTGCAGACATATTACGCAAAAAGATCGCATCTGTGGAACGAGGCAGTGAAGGCTTTCTTTTTGCGCAGGACCTTTTCCTCTCTGGCATGGGTCCATTTGCAACGCCAAATAATATACTGCACATCCACCGCTACTCTCCGAATGATATCACTGCACAGTGTAGACTTCAAGCTTTTGAAAAACAAATGATGTCCACCAAGGAAGAACGTGGTGATGCAAATGTAAGGTATGGATGGCTGGGATCTAGGAAGAATGACATAGTTAGGATCCTAATTAATGGTTTTGGTAACAATGGAAAACCTGCTGAGAAGGCAGGCTTGAGTGCTGGTGTTTATCTTTCACCAGAAGACCGAGCATTTTCCAGTGTTGGTCTTTGTGATGTTGACGAAAAAGGAGTGCAATATATGTTGCTCTGCCGGTTGATTTTGGGGAACATGGAGGCTGTCATGCCTGGATCACAAGATTCTTTTCCAAGCAGTGACATATATGATTCTGGTGTTGATGATTGCTCAAATCCAAAGTGCTACGTCATGTGGCCATCTCATCTTAGCACCCATATTCGTTTAGAATATCTTGTTAGTTTCAGGCTTTCCTCGAAAGTTCGAAATTATTTACTTGGTTTGAAGGGTTTATGGTTTCACCCATCACCAAAGGAAGTTGCGGTGGATATTTCTACTCTTGTACCTATAATGAGTGGAAATGCTGAGGGACCAACTTCCCCTTGGATATCCTTCAGAGTTCTTTTTGCCATGATTCAAGAAAATATATCATCGGTAGCAAGGGAATTGCTCTTCCATCATTATGAAGAGCTGAAGGAAAACAAAATAACTCGTGAGGAGATGGTAAAGCAAATGATAATATTAGTTGGAGAGAAGTTGCTTTTGGAAACCTTGAAGAGGCTTCATTACTGTCCATCATTATGGTATAAATCTGCTGGCAAAATAGCATCTTCTGATCCTGCGAGGACAGCTGCAGAAGACAGGTCTTTGGATCAAACTGGGAATTGTTCATTAATTGTTAGTGTTGTGCATGGTGATTCTCATGCCCCAAATGCAGTAGCTGAAAACAGCACCAGTCTTTGCACCAAAGGATGTGATACTCCTGCAACAGGCATGATTTCCAAGGGCTATGATTCTCTGGCACCAAAAGGTGTGCCGGAAACTTCTACTTCTGTCGGCCCTGTACATGGGGCTTCTCCAAGTGTGGAACCCAAAGTGAGGGATTCTCCTATACAAACCGTTTTATCAGGAAACATTGCTACCGATTGTGCCAAAAGGCAAGATCCATTGGTATCAAGAGTGGCACCTGTAGCTCATAATGGCCTTTTAAGGATGCCATCTGGAAAATCAGCATCTCTCGCAGTGCAAGTTTGCAATTCTGTTAGACCAAGCACAGGACCTTCAGGTCGTGCTTCTACAGAACCAAATAATGCCTCTAAAAGTTGTGGGATTTTTGCTCCGGGTATCAGTCCAAAGGGTGGTGAATCTCTTGTTCCTAGTTTGGCATTAGGAAATTCCAAATATGCAGGTGTAGAAGGTCTCAATTCTGCATCAAGAGCGGCACCTCCGGGTATTAGGCCAAAGGGCGGTGAATCTCTTGTTCATGGTTTGGCATTGGGAAATTCCAAATGTGCAGGAGCAGAAGGTATCAATTCTGCACCAAGAGTGACTCCACTGGGTATCAGGCCAAAGGGCGGTGAATCTATTGCTCCTAGTTTGGCATTGGGAAATTCCAAATGTGCAGGTGCAGAAGGTATCAATTCTGCACCAAGAGTGACTCCTCCGGGTATCAGGCCAAAGGGCGGTGAATCTATTGCTCCTAGTTTGGCACTGGGGAATTCCAAATGTGCAGGTGCAGAAGGTCTCAATTCTGCACCAAGAGTGACACCTCCCGGTATCAGGCCAAAGGGCGGTGAATCTTTTGTTCCTAGTTTGGCATTGGGAAATTCCAAATGTGCAGGTGCAGAAGGTCTCAATTCTGCACCAAGAGTGACACCTAAAGACAAGGAGTTTCTTTCATTGAGTATTTCATCACAACAAAGCCCAGTTCTTAATTCAGGGCATGGAAATCCTAAAGCTTTGGCCACTGAGGCCCGTGGTTCTCTATCTCTGAGTATTGCACCGAATGTCCATGACCCTCCAGCATCAAGTAAGGAGCCTAAGGACGATGCATCTCCAATAGCAGGCATGGTCTCAGAAAGCCAGCACTCTCAAGCACCTAATGCAGTCACCAAGGGGTATAATGCTCCCACACCCATACCTAAGGAGTCAAAAGGCCAGCATTTACAGAGTGGAGTGCACAGTCAATCGTCTGGGCCAGACGATGCTAGCAGCAGCAATGTCGCTCGGGCAGCTGATACCCTCGTCGCCCTATCAACTCTTCGAGAGAAGGGCAGGTAG</cdnaseq>

Protein Sequence

<aaseq>MDSENCYLCRFEMELSYPMASPQESNSLCLKRKLVDDCLSKECKSRRIKTEKGPSSDSSAKRCKCCCTRPNLASDCVNYLKSGVPSRVMFYKQGSWHNFPEQIMKSLIEEFRSNKSSVVAVMDDEPVLVDFLSMTLVNLKSRKQRSVAWFDDTGKCFYPSLFFDEEADEVAKVGGDFEGTTQGIMLDKVANSPPEVVKQVVLESSPPVPQKPATADILRKKIASVERGSEGFLFAQDLFLSGMGPFATPNNILHIHRYSPNDITAQCRLQAFEKQMMSTKEERGDANVRYGWLGSRKNDIVRILINGFGNNGKPAEKAGLSAGVYLSPEDRAFSSVGLCDVDEKGVQYMLLCRLILGNMEAVMPGSQDSFPSSDIYDSGVDDCSNPKCYVMWPSHLSTHIRLEYLVSFRLSSKVRNYLLGLKGLWFHPSPKEVAVDISTLVPIMSGNAEGPTSPWISFRVLFAMIQENISSVARELLFHHYEELKENKITREEMVKQMIILVGEKLLLETLKRLHYCPSLWYKSAGKIASSDPARTAAEDRSLDQTGNCSLIVSVVHGDSHAPNAVAENSTSLCTKGCDTPATGMISKGYDSLAPKGVPETSTSVGPVHGASPSVEPKVRDSPIQTVLSGNIATDCAKRQDPLVSRVAPVAHNGLLRMPSGKSASLAVQVCNSVRPSTGPSGRASTEPNNASKSCGIFAPGISPKGGESLVPSLALGNSKYAGVEGLNSASRAAPPGIRPKGGESLVHGLALGNSKCAGAEGINSAPRVTPLGIRPKGGESIAPSLALGNSKCAGAEGINSAPRVTPPGIRPKGGESIAPSLALGNSKCAGAEGLNSAPRVTPPGIRPKGGESFVPSLALGNSKCAGAEGLNSAPRVTPKDKEFLSLSISSQQSPVLNSGHGNPKALATEARGSLSLSIAPNVHDPPASSKEPKDDASPIAGMVSESQHSQAPNAVTKGYNAPTPIPKESKGQHLQSGVHSQSSGPDDASSSNVARAADTLVALSTLREKGR</aaseq>

Gene Sequence

<dnaseqindica>1..39#554..1518#1600..1841#1929..2008#2197..2325#2429..2524#3073..4219#4365..4562#4655..4797#ATGGATAGCGAGAACTGCTATTTGTGCCGTTTTGAGATGGTGTGTGTAATTTACTATGTCGTTATGGGATGTTTTTTTTTTGTCTATTCCTTTGGCTCACGTGTCCCTCCTGCTGCATTACTCATTTTTGTTTGTTGGATGATCAGTTGTTTGAACCGCTTACCTTTTTTATAGGCGCATATAAAAGTGATTTGGTGGTCCTGGAGTATTCATTTGGTCATGTATTCTATATTTCGGAAACTTAAGTTTTAATGGATTAATCTAGTGGAGGATGTAGTCAAGAATTTTCTTTTGTTGGTTCCTAAGAGATTTCTTGGCTCGCAAGTTGCAACGCGAATTGGGCTCTCATGTATTTTACTATTTTAGAAAGCTTTTAATTATCACAGATATAGTAGCCGAACAGATTGGATATAGCTGTGTATTCGAGACATCTGTTTGTTATCTTATACAGGGCATGCTCCGCCACTGAAGTCAAAATGTAGGGAGATCTGTTAAGTTGTATACCATATTAGGCTTAGTTTATTCTTTTATCTTTCTCCATTTGTTCTGCTAGGAACTGAGCTATCCCATGGCATCACCACAAGAATCCAATTCCTTGTGCTTGAAGCGCAAGCTTGTTGATGACTGCCTGTCAAAAGAGTGCAAGTCTCGTCGCATCAAAACTGAGAAGGGACCATCATCTGATTCATCTGCCAAGCGCTGCAAATGCTGTTGCACTCGACCTAACCTTGCCAGTGATTGTGTCAATTACCTAAAAAGTGGAGTGCCCAGCCGTGTTATGTTTTACAAACAGGGTTCTTGGCACAATTTTCCTGAGCAGATAATGAAGTCTCTCATTGAAGAATTTAGAAGCAATAAATCTAGTGTTGTTGCTGTGATGGACGATGAGCCTGTTCTTGTTGATTTCTTGTCGATGACCCTGGTCAACCTAAAATCTAGAAAGCAGCGGTCTGTGGCATGGTTTGATGACACTGGGAAGTGCTTTTATCCTTCTCTATTCTTTGATGAGGAAGCTGATGAAGTGGCTAAAGTAGGCGGTGATTTTGAGGGCACCACACAGGGAATAATGTTGGATAAGGTTGCAAATTCTCCACCAGAAGTGGTGAAGCAAGTTGTCCTTGAATCTAGTCCTCCAGTTCCACAGAAGCCTGCCACTGCAGACATATTACGCAAAAAGATCGCATCTGTGGAACGAGGCAGTGAAGGCTTTCTTTTTGCGCAGGACCTTTTCCTCTCTGGCATGGGTCCATTTGCAACGCCAAATAATATACTGCACATCCACCGCTACTCTCCGAATGATATCACTGCACAGTGTAGACTTCAAGCTTTTGAAAAACAAATGATGTCCACCAAGGAAGAACGTGGTGATGCAAATGTAAGGTATGGATGGCTGGGATCTAGGAAGAATGACATAGTTAGGATCCTAATTAATGGTTTTGGTAACAATGGAAAACCTGCTGAGAAGGCAGGCTTGAGTGCTGGTGTTTATCTTTCACCAGAAGACCGAGCATTTTCCAGGTACTTTTTATAAACTTAAAAAAATGTATTGACCATTCCATTTTAATTGTTTATGTATTTACATGATATCTTGCTTGACAGTGTTGGTCTTTGTGATGTTGACGAAAAAGGAGTGCAATATATGTTGCTCTGCCGGTTGATTTTGGGGAACATGGAGGCTGTCATGCCTGGATCACAAGATTCTTTTCCAAGCAGTGACATATATGATTCTGGTGTTGATGATTGCTCAAATCCAAAGTGCTACGTCATGTGGCCATCTCATCTTAGCACCCATATTCGTTTAGAATATCTTGTTAGTTTCAGGCTTTCCTCGAAAGTTCGAAGTAAGATGATAAATAATAGTTAAAGGTTTTTATCATGTTTTGTTGATATAGGTGGAGTGATATATTTTTTGGTTCACTTGTTTTCAGATTATTTACTTGGTTTGAAGGGTTTATGGTTTCACCCATCACCAAAGGAAGTTGCGGTGGATATTTCTACTCTTGTACCTGTGAGGCAACCTAGTTTTCTTCGTTTCTTCTTTTCCATTGACACTCTGGTTTTCCAGCTAGATGTGCATGTACTGCTAACAGTGGTAGAATAGAAGTCTGATCTGAGAGCAATCCAATTTCACTACAGATTGTTCCTCCCTTCTTTAAATGACAAATGATCTTGGCTTTGTTGTACATTTTTATGCAGATAATGAGTGGAAATGCTGAGGGACCAACTTCCCCTTGGATATCCTTCAGAGTTCTTTTTGCCATGATTCAAGAAAATATATCATCGGTAGCAAGGGAATTGCTCTTCCATCATTATGAAGAGCTGAAGGTACTAACTAACCAACAAGTTACACTGTGTTTATTTATTAGCATTGGCTGTGTGGTTGGTTGGTGTGATGGGTACTAAAATGTTTTAATTGTTTATTTGACAGGAAAACAAAATAACTCGTGAGGAGATGGTAAAGCAAATGATAATATTAGTTGGAGAGAAGTTGCTTTTGGAAACCTTGAAGAGGCTTCATTACTGTGTAAGTCGGCTGTCCCCTGCTGTTATCCTTCAAAACAATTTCTGGTGACATATGCTTGTTTTCTCAGTTCACATCCATACTAAGGATACTTTTAATGCTCATATACTTTTAATACATTATGGACAAGTTTGCATATGACAACAGGCACAATTTTAGGAAGTTTTTGTTCAGGTGTTGCAATTTTTATAAGATGGTTTATTATCACATTGTTTATCAAATCACACATATTTGTCAAATAAAGAAATATCTGCTAAATTTTTTAAACGAGTAATAAGAAAATTGGTAGGGGCTAGGAAACTAGCAAGGCCTTGAAAAAAATATAGGGAACTCTCAAAGCAGCCAAACATGCCTAAAACAGGCACAGGCCTTTTGAATTCATGTTTGGATAAATTATTTGGAAATTTTCCTCACTTGTTTCAGGCATCCTCTTATTTTTACTGTACCAGTTTATCTGTACTCATATTTCACATAGCTGCTGCTGCATCTGTACTGGTGTGATTAACTGCACCTTTCTTCTGATGCCATTGTGTCCTTGGCTTCTGTTGCAGCCATCATTATGGTATAAATCTGCTGGCAAAATAGCATCTTCTGATCCTGCGAGGACAGCTGCAGAAGACAGGTCTTTGGATCAAACTGGGAATTGTTCATTAATTGTTAGTGTTGTGCATGGTGATTCTCATGCCCCAAATGCAGTAGCTGAAAACAGCACCAGTCTTTGCACCAAAGGATGTGATACTCCTGCAACAGGCATGATTTCCAAGGGCTATGATTCTCTGGCACCAAAAGGTGTGCCGGAAACTTCTACTTCTGTCGGCCCTGTACATGGGGCTTCTCCAAGTGTGGAACCCAAAGTGAGGGATTCTCCTATACAAACCGTTTTATCAGGAAACATTGCTACCGATTGTGCCAAAAGGCAAGATCCATTGGTATCAAGAGTGGCACCTGTAGCTCATAATGGCCTTTTAAGGATGCCATCTGGAAAATCAGCATCTCTCGCAGTGCAAGTTTGCAATTCTGTTAGACCAAGCACAGGACCTTCAGGTCGTGCTTCTACAGAACCAAATAATGCCTCTAAAAGTTGTGGGATTTTTGCTCCGGGTATCAGTCCAAAGGGTGGTGAATCTCTTGTTCCTAGTTTGGCATTAGGAAATTCCAAATATGCAGGTGTAGAAGGTCTCAATTCTGCATCAAGAGCGGCACCTCCGGGTATTAGGCCAAAGGGCGGTGAATCTCTTGTTCATGGTTTGGCATTGGGAAATTCCAAATGTGCAGGAGCAGAAGGTATCAATTCTGCACCAAGAGTGACTCCACTGGGTATCAGGCCAAAGGGCGGTGAATCTATTGCTCCTAGTTTGGCATTGGGAAATTCCAAATGTGCAGGTGCAGAAGGTATCAATTCTGCACCAAGAGTGACTCCTCCGGGTATCAGGCCAAAGGGCGGTGAATCTATTGCTCCTAGTTTGGCACTGGGGAATTCCAAATGTGCAGGTGCAGAAGGTCTCAATTCTGCACCAAGAGTGACACCTCCCGGTATCAGGCCAAAGGGCGGTGAATCTTTTGTTCCTAGTTTGGCATTGGGAAATTCCAAATGTGCAGGTGCAGAAGGTCTCAATTCTGCACCAAGAGTGACACCTAAAGACAAGGAGTTTCTTTCATTGAGTATTTCATCACAACAAAGCCCAGTTCTTAATTCAGGTAAAGGCCATGATGGGACATCAGGTGCCGCACGTCCAGTACATGCACCAGGTTTACCCTCTTCCAACTGCAGATCATCTGTAGCACTTCAAGGGTTATTCTTGTGTACAAAATGTAGATAATCAATGCTTTCATTACCGTGCAGGGCATGGAAATCCTAAAGCTTTGGCCACTGAGGCCCGTGGTTCTCTATCTCTGAGTATTGCACCGAATGTCCATGACCCTCCAGCATCAAGTAAGGAGCCTAAGGACGATGCATCTCCAATAGCAGGCATGGTCTCAGAAAGCCAGCACTCTCAAGCACCTAATGCAGTCACCAAGGGGTATAATGCTCCCACACCCAGTACGGTGCTTGGAAACTCTTGCCATGGAACAACATTGTTGGTAACATCACTTGTTTTTTTGCTAACTCTCATGCTTCCTTGGTGACTGCAGTACCTAAGGAGTCAAAAGGCCAGCATTTACAGAGTGGAGTGCACAGTCAATCGTCTGGGCCAGACGATGCTAGCAGCAGCAATGTCGCTCGGGCAGCTGATACCCTCGTCGCCCTATCAACTCTTCGAGAGAAGGGCAGGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA014117