BGIOSGA014459

From RiceWiki
Revision as of 03:58, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA014459| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA014459, complete gene.| tag = OsI_171...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA014459

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA014459, complete gene.

LocusTag

OsI_17170

Ensembl Transcript ID

BGIOSGA014459-TA

Ensembl Protein ID

BGIOSGA014459-PA

Length

5423

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:28596061..28601483

Sequence Coding Region

28601179..28601483,28599251..28599312,28598111..28598851,28597879..28598055,28597670..28597792
,28597486..28597551,28596425..28597393,28596061..28596332

Genome Context

<gbrowseImage1> name=IndicaChromosome04:28596061..28601483 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:28596061..28601483 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAAACACTGTTTGTGTGGGCATTTCAGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTCCATCGACAAGCCTCGCCGATCTGCGACGCCGAGGAGCCGTGGGCTCCTGCATCGACGCACTGCCACCGCCTCCACCTCGAGCGTCAACGCTGCCAAGAGGTACAAAAACCCTGCTCCACCACCCCTCCAGCTTCTACCTGATCCCCATCCCTAATATGACCATAAATGTGATGTCCTATGAAGCATCAAGCATAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGTTGACGCAACGAAGCCACAAACTGAAGAGCGTATTGCATTCCGGGATATCACCAACAGATTGGATGTATTGCAAACGACACATATAACTCCTTCCGATGAGGTATTACGTAAGCGGGAAGCACATAACCGAAGCCAACGTGAATACCGTGCAAGGAAAAAGGCTGCAGCAAATACCCCGTGTTCTGGAACACTGCGGCAACCAACTACTGCTTCTCTTTCTAAGGAATTTGAAGTTGTCAATGCCCAGCTAGCTGAAGCTACCAATGATGCCAGAGAGGAAAGGAACCGTAAGCAACGTGAATATCGCCAAAAGAAGAAGGTTGGGTCAACTAATCTTGATAGTAGTGTGACCTCTTTAACACCAGTACAACCAGCAAATGAGGAAAGGAACAGAAAGCATCGCGAATACCGTGCGAGGAAGAAGGCCGAGTCAGACATTGTTAGGGGATCAAATTCCCAATCAACCGATCATAATGGTAAAATTTATGCCCGTGACGAATCAACCGATCACATTTTTATTCATTTTGTATCACCATATTCAACGACATCTTATATCGTTTTGCAAGCAACAAGCGTATTATACAACGAAGATGGGGATCCTGGGAGCGTGATCTCTTTAACAGCAGTACAACCAGCAAATGAGGAAAGGAACAGAAAGCAGCGTGAATACCGTGCGAGGAAGAAGGCCGAGTCAAGCATTGTTAGCGGATCAAATTCTGAATTAACCAATCATAATGTGTTGCCATATGGAACGACATCTTCTACCATTTTGCAAGCTACAAGCGTATTATACAAGGAAGATGTTGATCCAGATGATCCGATGGATTGGTTTCACAGAAATGATACCTACCAAAGACAATGTAGGAAGAGGAAAGCAGTGAGCATTGAACGTGACCAACACTCACCCATGCTAGATGGAGTTACAGCAGACGAAAGTATACCTGTCCAAGATGTTCATCAGGACATTCCGAGTTTCGATTACATTGAATTCGATAGTAGACTATTCGAGCCTGCACTAAACAATTTTGACAACGAAGGTAATGTCGAACTGACGCAGACATGTGACGTCGTGGATAGTGATGATGAGGAATTTCAAAATAAAGACAATGGTTACGAGTCATATCGCGTGGATATCAAGGGTGTTAATTCTGTTGATGCTGAAGATCCATACGATTATGTTTATCATAACCTGCCAGAGAAACATCACGTGTTAAAAAAAACGGCTGATTGCAAGTACTGTGGGGCGATTAGGTTTCAGTACGAGCCCCCTGGATTCTGCTGCAGGCAAGGGAAGATAACGGTAGCCACTCCATTGGTTCCCCCTGAGTTGGTACGCCTGTTTACAAGCCAGGTTGATAATGATGCGAAGTACTTTAGAAAACATATCCGTTACTTCAACTCTCATTTCTCATTCACAAGTCTTGGAGTGACCCTTGACCGCAGCGTGAGCACTGCTGCAGGCACCGGTGTATATACATTTCGAGTGCATGGTGCATTGTACCATCGTTTAGATAATTTGGTGCCAGGTTCTCATGGTCCACGTCATATGCAGTTGTACTTCTATGATACGGAAGAAGACACTGATCTTGCACACAGAGCAAAGAGGTCCCCTGATCTTGATATCAACCTTGTGCGAATCATCCTAAGAATCTTGGCGGATAACCCATATGTTGAGACTTTTAACCGAGTCGGTACCATGCCAAATCTAGATGACTATAAGATTGAGATCAACACGAATGTCACCCCTGACCAACGAAGATATAATGCTCCTACAACATCTCAAGTTGCTGCTATCTGGCTAGAAGGGGATGATCCGGTTAGAACTTTTGATAGGCATGTGATGGTGCATGCCAAAGGGGAGAAACCTAGCTATATCAAAGCATACCATGGTTGCTATGACCCATTGGCGTATCCTTTATTTAACCCTAACGGCGAAACCGGATGGAATGTCAAAATGCCGTACGAAACACCCAACAATATTCCTGACGGTATGGACATTGATGCACCAAGTGCTGCACCAATGGATGGTAATGTGCACGTCAGTGAAGAAAACACTTTTGGCGAGCCTCCTGAGAATGATGACGTTGGCGATACTTTATACGATGAAGACACTAAAGAGGTGGATAACAGGTCATGCAAGCGGAAGAAAGATAGATTTGTCATTGCAAGAGAGTACTATTGCTTTAGGCTACAGGTTCGGAGGGGACTTTTCAACATTATTTTATTTGGAGGTCGTCTCTTTCAGCAATGGGCCATTGACATGTACATTAAGATAGAGTCTATGCGACTGGATTGGTATTCTAACCCTGAGAACCAAAAGAAGATACGAGCTGAGCTGTACTAG</cdnaseq>

Protein Sequence

<aaseq>METLFVWAFQPFAEYFKDKWCSSPGTAFASLVRAAITPSTSLADLRRRGAVGSCIDALPPPPPRASTLPRGTKTLLHHPSSFYLIPIPNMTINVMSYEASSITSETSRWSASLSRQGIMENMGVDATKPQTEERIAFRDITNRLDVLQTTHITPSDEVLRKREAHNRSQREYRARKKAAANTPCSGTLRQPTTASLSKEFEVVNAQLAEATNDAREERNRKQREYRQKKKVGSTNLDSSVTSLTPVQPANEERNRKHREYRARKKAESDIVRGSNSQSTDHNGKIYARDESTDHIFIHFVSPYSTTSYIVLQATSVLYNEDGDPGSVISLTAVQPANEERNRKQREYRARKKAESSIVSGSNSELTNHNVLPYGTTSSTILQATSVLYKEDVDPDDPMDWFHRNDTYQRQCRKRKAVSIERDQHSPMLDGVTADESIPVQDVHQDIPSFDYIEFDSRLFEPALNNFDNEGNVELTQTCDVVDSDDEEFQNKDNGYESYRVDIKGVNSVDAEDPYDYVYHNLPEKHHVLKKTADCKYCGAIRFQYEPPGFCCRQGKITVATPLVPPELVRLFTSQVDNDAKYFRKHIRYFNSHFSFTSLGVTLDRSVSTAAGTGVYTFRVHGALYHRLDNLVPGSHGPRHMQLYFYDTEEDTDLAHRAKRSPDLDINLVRIILRILADNPYVETFNRVGTMPNLDDYKIEINTNVTPDQRRYNAPTTSQVAAIWLEGDDPVRTFDRHVMVHAKGEKPSYIKAYHGCYDPLAYPLFNPNGETGWNVKMPYETPNNIPDGMDIDAPSAAPMDGNVHVSEENTFGEPPENDDVGDTLYDEDTKEVDNRSCKRKKDRFVIAREYYCFRLQVRRGLFNIILFGGRLFQQWAIDMYIKIESMRLDWYSNPENQKKIRAELY</aaseq>

Gene Sequence

<dnaseqindica>1..305#2172..2233#2633..3373#3429..3605#3692..3814#3933..3998#4091..5059#5152..5423#ATGGAAACACTGTTTGTGTGGGCATTTCAGCCTTTTGCAGAGTATTTTAAAGACAAATGGTGTAGCTCGCCAGGGACTGCATTTGCGTCACTCGTCCGCGCCGCCATAACTCCATCGACAAGCCTCGCCGATCTGCGACGCCGAGGAGCCGTGGGCTCCTGCATCGACGCACTGCCACCGCCTCCACCTCGAGCGTCAACGCTGCCAAGAGGTACAAAAACCCTGCTCCACCACCCCTCCAGCTTCTACCTGATCCCCATCCCTAATATGACCATAAATGTGATGTCCTATGAAGCATCAAGCATGTATGTCTTCTCTCTTTTATTTCACTTCTCATTGAGGATTAGCTCGGCGGCGCTGATTTTATTTTCCAATTGAGTATATAGCTGGTCCATTTACTAAACAAGGCATAAAAGTATCCATATACCTTCAACCCATAATATGTATTTTTAGTGGTTCTAACCACATATTGCATAATATAATGTGCTGCGGTGATACTGAGCCTTGTAAGATACCTACTTAGAGATGAGATTTTAGGGGGTTTCGGTGAACTGACTTGTAGTTCTCGGTGTGGGAAATCATTTGTGTGTTGGTGAAGTCATGCTCATAATGACATAGAGCTCACCTGCTAATTTTGGTAAAATAAACTGCATGGTGTTGATATTTTTGAAGTTCAGGCTAATAAATTTCATGATGATATGCTCCACTTAAAAACAGTTTTAAGGCAAATGCTCTAATTATATTAGAAAACGGTTTTAACTTTTTTTTTTTGCATGCATGCATGCTCTACATCTGTTTGTTGACCCATTGTCAACTCCTGGCAGAAGTAAAAACTCCTGGCATACAATTTCTACTATCCTTTTTACTGCTTTCTTGATTTTTTGGTGTGTGTCGGTTCCTGGATCGGTGATTTAATGGTTTCAGTTTATATTCAGTATATATTCAATTATTTTGTAACATGAGCAGGTAAAATCCCCTCGACAAGCTGCTTCAGCGACCGGTATCCTCGGTCTCCGCCTCAACCGCCGCCGCCGCCACCACCGGATCCCTGCATCGTCGATTCTACTGCACACCTGCGAGCATAGCAGTGGATGTGAGGGTGTCGTGGTCCTGCTACAACCCTGTGAGCATCCACATCTCAGTTCTCATTCATCTCTCTCTGTCTCTATCCCACTTTTCTCTCATATTTGCTTGCATAAACCCTTAGCTTCTCTTCTAGATCTGGATGGATCTATTATCTTATTTTGTTTGTTTGCTAGGGTTAAATATGATTCAATTCAACACGAAACAGATGCCATATTTCACTGAACAACAAGCCCATTCACTCAATATCACATCAGGTCCTTGTAGCTTAAAATGAACACAATAGTACATTATTCCTTGCTGCTCATTATTTCTTTGGCATGCCGTCTCTCAATGTTCGAACTGATATGATGAGCATGTTAATTTGGCCTTGATATGTCAGTTACCGGTTTCATGGCCATTGTTCCACACGTCAAATACTCAAAAGTAGATGAAACTTAACTGCAGGAGTTCAGGCATTTTATCTTTTGCTAGGGTTAAATGTGATTCAATTCAACACGAAACAGAGGCCATGTTTCACTGAACAAGCCCATTCACTCAATATCACATCACTGTCACATTTTACAATTTCTGACTTCAGATACTGTGAATCATGCTTCAAATATATGTAATAATATAACCAGTATGTCAAGCTTATTATTATCTTCATAGATGGTTTGTAGTATGTCAAACTTGTGATAATTTTAAGAACTATAATTGATAGTATCTTCGGACATCTAATTTAGCCATTCACATGATTGATATGCTCTTGCCTTGCTAACGTAGGTCTTTCTTGTACTGATGGGTTCCTATTGGTTATTGACTATTAAAATAAATTCTAACATTATAAACTGATTTGTATAATATACGTCACTGGATCTGGTTATTCCTATATGCAAATGCACAACTTCAAATAGAAGCAGCTGTGTTTACGTTAATGGTAATGACTGATGGTTATATATGGACTTATCTGAAGTTATTTATGGACTTATCTGAACTTTGCATGCTTCCTCAGATGTCTGACTTCTTTGTAATGCTCTTTTATTTTTCTGTATTAATGCTTGGGATTACGACTCAGATAGAGTGCTAAATGTTTTCCACATGTGCAGAACAAGTGAAACTAGCCGTTGGAGTGCTTCTTTAAGTAGACAAGGCATAATGGAGAATATGGGTGAGACATTAATTTGTTTTTTCTCTAATTTGCTCACTGACTGAGATGGAATACTGGATAACATAATCATCCCGTGTGAATATCTCCAAAGAACTGGACAAGGGCTCATTCAGATGTATATGTCATTGGTTGTTCAACACATTTGTTATGCATTGATGACTGATTGGTGATGATTGTACCTTATGCACTTCACGCTGACAAGTAACTTGAGATGTTTATATTTGCATGGGAGACAACTTGTGTATGTCATATCTTTGTTTGACCCTGCACACGATTTCATAATCGCTTTATTGTACTGGGCATTTTCGCCATAATACATGCTTAAAACATTGCAATGTATGGTTATGGCACTATTATGCAAGCCATGATTAACCACTAATGTAAAAATACGTCTATTAGGTGTTGACGCAACGAAGCCACAAACTGAAGAGCGTATTGCATTCCGGGATATCACCAACAGATTGGATGTATTGCAAACGACACATATAACTCCTTCCGATGAGGTATTACGTAAGCGGGAAGCACATAACCGAAGCCAACGTGAATACCGTGCAAGGAAAAAGGCTGCAGCAAATACCCCGTGTTCTGGAACACTGCGGCAACCAACTACTGCTTCTCTTTCTAAGGAATTTGAAGTTGTCAATGCCCAGCTAGCTGAAGCTACCAATGATGCCAGAGAGGAAAGGAACCGTAAGCAACGTGAATATCGCCAAAAGAAGAAGGTTGGGTCAACTAATCTTGATAGTAGTGTGACCTCTTTAACACCAGTACAACCAGCAAATGAGGAAAGGAACAGAAAGCATCGCGAATACCGTGCGAGGAAGAAGGCCGAGTCAGACATTGTTAGGGGATCAAATTCCCAATCAACCGATCATAATGGTAAAATTTATGCCCGTGACGAATCAACCGATCACATTTTTATTCATTTTGTATCACCATATTCAACGACATCTTATATCGTTTTGCAAGCAACAAGCGTATTATACAACGAAGATGGGGATCCTGGGAGCGTGATCTCTTTAACAGCAGTACAACCAGCAAATGAGGAAAGGAACAGAAAGCAGCGTGAATACCGTGCGAGGAAGAAGGCCGAGTCAAGCATTGTTAGCGGATCAAATTCTGAATTAACCAATCATAATGGTATAACTTACTGTCAGAATCAACTTTTTGTTTTAATCACTATTTTTTCATTTAGTGTTGCCATATGGAACGACATCTTCTACCATTTTGCAAGCTACAAGCGTATTATACAAGGAAGATGTTGATCCAGATGATCCGATGGATTGGTTTCACAGAAATGATACCTACCAAAGACAATGTAGGAAGAGGAAAGCAGTGAGCATTGAACGTGACCAACACTCACCCATGCTAGGTAAACTCCCTCCATAAAATTCAATGCATAAATCAATATTTCATATTCTTCTCGATTTATTATTTCATGAAATATTGATTAAGCAGATGGAGTTACAGCAGACGAAAGTATACCTGTCCAAGATGTTCATCAGGACATTCCGAGTTTCGATTACATTGAATTCGATAGTAGACTATTCGAGCCTGCACTAAACAATTTTGACAACGAAGGTGAGCATTCTTAATTTGTTTTAATTAATGCTGGAGGTGTTTTATGAAAAATTTCACTACACAATATATTAACCCAACAACTATACGATATTATCAGTACTAATCCACCTTCCATCAGGTAATGTCGAACTGACGCAGACATGTGACGTCGTGGATAGTGATGATGAGGAATTTCAAAATAAAGGTATCATAAAGTATAATAATACTTTTCTCTTTTCAAGACAAGTAGGTATATATGATCATATTTTAATTCTGTGCTTATTTTCCCTCTCTCAGACAATGGTTACGAGTCATATCGCGTGGATATCAAGGGTGTTAATTCTGTTGATGCTGAAGATCCATACGATTATGTTTATCATAACCTGCCAGAGAAACATCACGTGTTAAAAAAAACGGCTGATTGCAAGTACTGTGGGGCGATTAGGTTTCAGTACGAGCCCCCTGGATTCTGCTGCAGGCAAGGGAAGATAACGGTAGCCACTCCATTGGTTCCCCCTGAGTTGGTACGCCTGTTTACAAGCCAGGTTGATAATGATGCGAAGTACTTTAGAAAACATATCCGTTACTTCAACTCTCATTTCTCATTCACAAGTCTTGGAGTGACCCTTGACCGCAGCGTGAGCACTGCTGCAGGCACCGGTGTATATACATTTCGAGTGCATGGTGCATTGTACCATCGTTTAGATAATTTGGTGCCAGGTTCTCATGGTCCACGTCATATGCAGTTGTACTTCTATGATACGGAAGAAGACACTGATCTTGCACACAGAGCAAAGAGGTCCCCTGATCTTGATATCAACCTTGTGCGAATCATCCTAAGAATCTTGGCGGATAACCCATATGTTGAGACTTTTAACCGAGTCGGTACCATGCCAAATCTAGATGACTATAAGATTGAGATCAACACGAATGTCACCCCTGACCAACGAAGATATAATGCTCCTACAACATCTCAAGTTGCTGCTATCTGGCTAGAAGGGGATGATCCGGTTAGAACTTTTGATAGGCATGTGATGGTGCATGCCAAAGGGGAGAAACCTAGCTATATCAAAGCATACCATGGTTGCTATGACCCATTGGCGTATCCTTTATTTAACCCTAACGGCGAAACCGGATGGAATGTCAAAATGCCGTACGAAACACCCAACAATATTCCTGACGGTATGGACATTGATGCACCAAGTGCTGCACCAATGGATGGTAATGTGCACGTCAGTGAAGAAAACACTTTTGGCGAGCCTCCTGGTGTGTACACACTTAGCTTGTATGAGACCTTATCGATACATACATACTTTTAGGCCATTGTAATTAAGTATATTTCTTGATTTTTGTTGCAGAGAATGATGACGTTGGCGATACTTTATACGATGAAGACACTAAAGAGGTGGATAACAGGTCATGCAAGCGGAAGAAAGATAGATTTGTCATTGCAAGAGAGTACTATTGCTTTAGGCTACAGGTTCGGAGGGGACTTTTCAACATTATTTTATTTGGAGGTCGTCTCTTTCAGCAATGGGCCATTGACATGTACATTAAGATAGAGTCTATGCGACTGGATTGGTATTCTAACCCTGAGAACCAAAAGAAGATACGAGCTGAGCTGTACTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA014459