BGIOSGA014849

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Revision as of 04:04, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA014849| Description = cDNA clone:J033075M04, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA014849, complete gene.| ta...")
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Gene Name

BGIOSGA014849

Description

cDNA clone:J033075M04, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA014849, complete gene.

LocusTag

H0805A05.4

Ensembl Transcript ID

BGIOSGA014849-TA

Ensembl Protein ID

BGIOSGA014849-PA

Length

6164

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:22591444..22597607

Sequence Coding Region

22597476..22597607,22597083..22597169,22596578..22596646,22596303..22596435,22596163..22596209
,22595636..22595722,22595467..22595528,22595167..22595209,22594990..22595070
,22594744..22594863,22594512..22594617,22594306..22594369,22593733..22593775
,22593188..22593406,22592947..22593108,22592675..22592794,22592064..22592216
,22591813..22591899,22591636..22591704,22591444..22591548

Genome Context

<gbrowseImage1> name=IndicaChromosome04:22591444..22597607 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:22591444..22597607 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGGAAGAAGCAGAAGAAGCCCAGGAAGGGGAAGGAGAAGACGGAGCGGAAGACGGCCAAGGGCGAGGAGAAGCGCGCCCGCCGCGAGGCCCGGAAGGTCGGCGAGGAGGACGACATCGACGCCATCCTCAGGAGCATACAAAAGGAGGAGGCTAAGAAGAAGGAGGTACATATAGATGAGAATGTCCCTGCACCATCTCCCCGGTCCAATTGCTCGCTTACAATAAATCCCCTGAAAGATACAGAATTGGTTCTGTATGGAGGAGAGTTCTACAATGGCAGCAAGACCTTTGTTTATGGTGATCTTTATCGCTACGATGTAGAGAAAAATGAGTGGAAGTTGGTATCTAGTCCTAACAGTCCTCCTCCACGAAGTGCTCACCAAACAGTTGCCTGGAAGAATAATATATACATGTTTGGTGGGGAATTCACTTCGCCAAACCAAGAACGTTTTCATCATTACAAGGACTTTTGGTCATTGGATCTAAAAACAAATCAATGGGAGCAAATTCTTGCGAAGGGTTGTCCAAGTGCACGTTCAGGGCACAGGATGGTCCTCTATAAGCACAAGATCGTGCTATTTGGTGGTTTTTATGACACTCTTAGGGAAGTGAGATACTACAATGACTTACATGTTTTTGATTTAGATAATTTCAAGTGGGAGGAGATCAAGCCTCGCCCTGGGTGCTTGTGGCCAAGTCCAAGAAGTGGCTTTCAGCTAATGGTATACCAAGATCAGATATATCTGTATGGCGGATATTTTAAAGAAGTAGTTTCTTCTGACAAATCTGCATCAGAAAAAGGAACAGTTCATGCAGATATGTGGACTCTTGATCCTCGTACTTGGGAGTGGAATAAGGTTAAGAAAACTGGGATGCCACCTGGCCCCAGAGCTGGGTTTTCTATGTGCGTTCACAAGAAAAGGGCTGTTCTTTTCGGTGGTGTGGTAGATATGGAAATTGAAGGGGATGTCATTATGAGCATGTTTATGAATGAGCTCTATGGTTTCCAGCTGGACAACCATCGCTGGTATCCTTTAGAGCTCAGGAAAGACAAGCCTGCTAAAAATAAGACAAAGGACATCAAAAGAAAAGAACCATCGAACAATGTGGAAGATAATCTTGGTAATGAGGAGGATGAGATCATGGAGGACTCAGAAACTACTGGAGGGCAATCCGAAGTCCATGGGGTTTCGAATCACTTGACCAAGAGTCTAACCTTAAATAAAGCTGGCTCAGGCAATAGCTCTGATATTCTCTCTGATTCGACAACACAAGAAGTACTCCCAGAGGCAGTGAAACCCGGTGGTCGGATCAATGCATGCTTGGCTGTAGGGAAAGATACACTCTATTTATATGGAGGAATGATGGAATTGAAAGATAGAGAAATTACTCTTGATGATATGTATTCACTTAACCTTAGCAAACTAGATGAGTGGAAGTGTATCATACCGGCATCTGAATCTGAATGGCTAGAAATTTCTGAAGATGAGGATGATGAAGATGATGATGATGATGATAATGAGAATGATAGCGAGGATGACGCTAATCAGACCGATGAAGATGATGAAGAGTCTGATGAAGATGCCGAGAAGAATGTCGATATGTCCACTGCTGTATCGCTAATAAAGGGTGAACGTAAGAACTTGCGAAGAAAAGAGAAGCGTGCTCGGATAGAGCAAATTCGGGTTATGCTCGGTCTTTCTGATTCTCAAAGGACTCCAATGCCAGGAGAGTCACTAAAAGATTTCTACAAGAGAACGGATATGTACTGGCAGATGGCTGCATATGAGCACACTCAACACACTGGAAAGGAGCTCCGCAAAGATGGTTTTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCACTAGTTCCAAGAAAGACACGAAGAAAAGCAAGCAGAAGAGTGGCATGAGATAG</cdnaseq>

Protein Sequence

<aaseq>MGKKQKKPRKGKEKTERKTAKGEEKRARREARKVGEEDDIDAILRSIQKEEAKKKEVHIDENVPAPSPRSNCSLTINPLKDTELVLYGGEFYNGSKTFVYGDLYRYDVEKNEWKLVSSPNSPPPRSAHQTVAWKNNIYMFGGEFTSPNQERFHHYKDFWSLDLKTNQWEQILAKGCPSARSGHRMVLYKHKIVLFGGFYDTLREVRYYNDLHVFDLDNFKWEEIKPRPGCLWPSPRSGFQLMVYQDQIYLYGGYFKEVVSSDKSASEKGTVHADMWTLDPRTWEWNKVKKTGMPPGPRAGFSMCVHKKRAVLFGGVVDMEIEGDVIMSMFMNELYGFQLDNHRWYPLELRKDKPAKNKTKDIKRKEPSNNVEDNLGNEEDEIMEDSETTGGQSEVHGVSNHLTKSLTLNKAGSGNSSDILSDSTTQEVLPEAVKPGGRINACLAVGKDTLYLYGGMMELKDREITLDDMYSLNLSKLDEWKCIIPASESEWLEISEDEDDEDDDDDDNENDSEDDANQTDEDDEESDEDAEKNVDMSTAVSLIKGERKNLRRKEKRARIEQIRVMLGLSDSQRTPMPGESLKDFYKRTDMYWQMAAYEHTQHTGKELRKDGFDLAETRYKELKPILDELAVLEAEQKAEEEASASTSSKKDTKKSKQKSGMR</aaseq>

Gene Sequence

<dnaseqindica>1..132#439..525#962..1030#1173..1305#1399..1445#1886..1972#2080..2141#2399..2441#2538..2618#2745..2864#2991..3096#3239..3302#3833..3875#4202..4420#4500..4661#4814..4933#5392..5544#5709..5795#5904..5972#6060..6164#ATGGGGAAGAAGCAGAAGAAGCCCAGGAAGGGGAAGGAGAAGACGGAGCGGAAGACGGCCAAGGGCGAGGAGAAGCGCGCCCGCCGCGAGGCCCGGAAGGTCGGCGAGGAGGACGACATCGACGCCATCCTCGTACGTGTGCTCCCTCCCTCCCGCCCCCCTCCTCTGCGTCAGCTCTTCACGCTCGCTCAGTGCGCTCTAGCTCGATCGGCGTCTCCATGTGCGGTTTTGTTTGCTCACCACCACCTTCTGCGTCTCGTGATGCACTCCGGTGGCTGAAAAATTGGAAGCGATTTTCGCACTGGCTCACCTTTTTCCCTTCACATTTCGTTGCGTAGCAGCTATGGATTTTAGATGAGTTTGGTGTTGCTATGTGTGCTGTTTGAACTTTTTTTTTTTGCTGATTTATCTATTTGCTCTGGTTATTTTTCATTGCAGAGGAGCATACAAAAGGAGGAGGCTAAGAAGAAGGAGGTACATATAGATGAGAATGTCCCTGCACCATCTCCCCGGTCCAATTGCTCGGTAAGACATTTTAGAGCAAGTGCCAGCTAAAGAAGTTAATCTTTCGGTATTCTTGTGATTATGTACTTGAAGTGGACTAGGTATCATTTTTATGCTTGTGGTGGTCATGTTTGCATGCTTAGAATTTATATACTCCAGTAGGATTAATAAATTTCTTCAGGCAAGATGGATTTTTTTATGAAGTAATTTGATCAAATATGATGATCTTTTGGTGATACTGAACCGATTGGTTTTTCAGTTCCGGATAGGTGATGTCAAATTACAATTCAGGGGCAAAATGTGTTAAAAGATAGATGTTCGTTTTGTTTTTTTTTTTGTTAACTGTTGGAAAAAGTTTTTGATGTTGTACAGAGATCCTCCCTCTAAATGTTAACTATAACAAATAAACCTGCATATGATCTTCCAGCTGACCAAGTTAATTCCTTCTTAAATGCAGCTTACAATAAATCCCCTGAAAGATACAGAATTGGTTCTGTATGGAGGAGAGTTCTACAATGGCAGCAAGGTGGGAGACATATCCTTCACGATTTCACTGCTGGTTGAATGAGATATGTTCATCTAGTGTTCTTTTTGCCTCTATTCTGCTTCTAGAGGTTTTTGAGTACTGAAATAGTATTTCTTTTCCTCGCCACAATCTATTTCTGCAGACCTTTGTTTATGGTGATCTTTATCGCTACGATGTAGAGAAAAATGAGTGGAAGTTGGTATCTAGTCCTAACAGTCCTCCTCCACGAAGTGCTCACCAAACAGTTGCCTGGAAGAATAATATATACATGTTTGGTAACATAACTTAACTTTGGGAAGGCATTCTATGAGTTAAAATGCTTTTTCAGTATGTATGATTTAGTTTTTTATTCTGTGTTGATGTTTCAGGTGGGGAATTCACTTCGCCAAACCAAGAACGTTTTCATCATTACAAGGTAGAAGACTAATTTTGTCAGTCTATTTCTTGTGACTGTTTTGAGTATCTTCTCTTGGCACAAGGCATTTGCACAATTCGTATATAAGCAGTAGCTTCATAAGCAATACATATCTGGCATGATTTTTTTTCAATTTTAAACCAAGAGATAGGTACTGATTCCCATGTTCTTACATAATTATAAGTTGAAATATGACTAATGGAGACTAATATGTGCAGTTCTTCTGCTATTTATTGATTTAAGATTAAGATGTAGAGGATGCGGGGTTCACCTGCCCTTTTATTTGGATTTGCACATATAACATCACTTTTTATTCCTGATTGCCTTTTTTTTTCCTTTCTGTTGTGATATTAATGGGGTTATTTCGAGATTAGCTATCTTAGATGGAAAACTCATTATTATGGTTCTATTCAAATTTCTGGTCTGATTTTGTACTGTAGGACTTTTGGTCATTGGATCTAAAAACAAATCAATGGGAGCAAATTCTTGCGAAGGGTTGTCCAAGTGCACGTTCAGGGCACAGGATGGTTAGTGGTTTTACATTAAAATCAGTCATCAACTATTCTGCTCCCCTCTTTTCACCTTAATATTTCTGTATTATGAGCAGTAGTAAATTGTGTTCTTTTTCCTACAGGTCCTCTATAAGCACAAGATCGTGCTATTTGGTGGTTTTTATGACACTCTTAGGGAAGTGAGGTTAGTACAGTTACATTTTATATGACTCTACCCTGGTAATCTTGTTATTAGAGTAACATTTATATTTGGACCATGTCTAGAAGTAGTGGAGTCATTATGTCCAAACTACAAATTATGCACTACCTGAATAACAGTGTAGCACTCTTACAGCTGATCATCCGCAAAGAATGAAATGGTGTGGCGTAGAGTACGTTCTGAATAAATAGTGTGACATGACATGATCTGATCTGCATTTTTTTTATAATATCCTTCTGCAGATACTACAATGACTTACATGTTTTTGATTTAGATAATTTCAAGGTGAGTACACCATGTTAATATTTTGTTTAATACTGTTAGTAGTAACACATGAAGTCATTTATTTTAATACTCTTACTGGGAATATTTGTATTTCAGTGGGAGGAGATCAAGCCTCGCCCTGGGTGCTTGTGGCCAAGTCCAAGAAGTGGCTTTCAGCTAATGGTATACCAAGATCAGGTAGGTCTTTTTGGATTTAAAGCTAGGACATTGATACTTCATAAAAAGAGTTTAAATTAACTATAAACCAACCTTGTCTTCGACTACTTTTGTTTACAAGAGTATTAATGGCCCTTATTTCTGTAGATATATCTGTATGGCGGATATTTTAAAGAAGTAGTTTCTTCTGACAAATCTGCATCAGAAAAAGGAACAGTTCATGCAGATATGTGGACTCTTGATCCTCGTACTTGGGAGTGGAATAAGGTGATCTCTTGCAATTTTTTAGAACATTGTATCAACTTCCATCATGATAGTGTATCGAGTTTTACTTTAAGCCATATATCCACTGAGTGATTTGCATATTATTACCTTCACTTGATTTCTTAATAGGTTAAGAAAACTGGGATGCCACCTGGCCCCAGAGCTGGGTTTTCTATGTGCGTTCACAAGAAAAGGGCTGTTCTTTTCGGTGGTGTGGTAGATATGGAAATTGAAGGTTATTTTCAGCTCAATTTTGCTCTGTGCATAGCTACTTAGGTTATTTTACTAAGTATTTGAAATACCACGCGTGTCAAGTTTGTTCCTTTTCTGTAGAAGTTCTCAAGGCCTAACTGTAGAACCCAATTTTGTGATTGCAGGGGATGTCATTATGAGCATGTTTATGAATGAGCTCTATGGTTTCCAGCTGGACAACCATCGCTGGTATACTTCAATACTCCATTTGAGTATCTTGTGTTTTTAAGTAACACAGGCTAGTTTTATCCCTGCTTATTTTGTTCCTTGCTATTTTTGTGTATTGTTGCAACTTTCTTTATTATTATTTAACAGTGCAGCTAACTAATGTCACTTCCTATTCCGACATGCAAACTGCTTCTAACTAGGTTTAAAATTATTAAAGGTCTAAATCTTTCTCGGCTGATTGATGGTTATGTTCATCTATCGTCTTAGGATGAACTTTGTTTGTAATCTTGTGGTTATCTAGATAACATAACTACTTTGAGAATTGTTCAGTGATATTATTGTTTACTCTTGGGATCCCTTCGTAGCATATTATTGTTTACTTCAGCGGAATTGTTCAGCGATGTTCATTTTGGTTGAAACTACTGGTCCACGGCTCACATATTCTCCAATTTCAATTGTCCACACTGGTGCATAGATGAGAAATGTTATGCTTTCTTATTTAGCTTCATTTTTGTGTGTCTATGTTCAGATTATTTTCCTTGCTGTTTCAGGTATCCTTTAGAGCTCAGGAAAGACAAGCCTGCTAAAAATAAGGTGATTCCTCGAATTCAATCATATGACCAGCCATCTCATGTTTACAGTTTGTATTTTTTAGGTACTTGATACACAGTCTACTCTGCAGGAATCTATTTCATTAGTTCAGACATAAAGACTAAGCATGTAGTATAGGGTATGCCTGTTTTTCTTTTTAATAAGCATATACGATATGTACATATTCTCATATACTATTATACTGTTATTTTCTTAATAAGCATATGCGATCTGTCGACATATTCACATTGACTATTATATAGTAATATTTGGATCATTGCTTAAAAGCAGTTTGTGCTTCTTTTTTTTTTTTTGGGTGCCATGTGTAGACAAAGGACATCAAAAGAAAAGAACCATCGAACAATGTGGAAGATAATCTTGGTAATGAGGAGGATGAGATCATGGAGGACTCAGAAACTACTGGAGGGCAATCCGAAGTCCATGGGGTTTCGAATCACTTGACCAAGAGTCTAACCTTAAATAAAGCTGGCTCAGGCAATAGCTCTGATATTCTCTCTGATTCGACAACACAAGAAGTACTCCCAGAGGTATTGCAGCTGTTCTTTTAGATGTTGACATTTACATTCTAATGATCTTTTGTTTCTCATTAGCATTTGCTGCTTACAGGCAGTGAAACCCGGTGGTCGGATCAATGCATGCTTGGCTGTAGGGAAAGATACACTCTATTTATATGGAGGAATGATGGAATTGAAAGATAGAGAAATTACTCTTGATGATATGTATTCACTTAACCTTAGCAAACTAGATGAGTGGAAGTGTATCATACCGGTCAGTTGCAGATTGGCCCCTTCTTTTTGCCATTTTGTTGTTTAACTGATAGTGTTGTTTATTTCAATCAGAGATAACAGAAAATTATCTGTTATCATTTTTTACTATTCACATTGGTTTCTGAACTTGCCTTACTCACCTTTCTTATGCAGGCATCTGAATCTGAATGGCTAGAAATTTCTGAAGATGAGGATGATGAAGATGATGATGATGATGATAATGAGAATGATAGCGAGGATGACGCTAATCAGACCGATGAAGATGATGAAGAGGTATGCAAAATTATTTTAGGTTTGGTCACACATTTTTGGGATTTATATCTTGCTAAGTTCATGATTAATGGCTGTACTAGATAGAATCTTTCTAAGTTCGCGTGGGCGAGGACTTTATATCTGATTTAGGCACGTTTACATTTTCTCTACAAATTAGAACAGATTTTCAAAAAATGTTTTTTAAGAAAATGGGGAAGATAATGTTGACTTGATGTGTCCCACAATTCTGCCACAAACCAAACATCCTGTCTCTGGCCTGTTTGTTTCTAGTTGAATCTTGGTGTTTGACCAAAATACTGCATGATGGTTCATCTTCTATTACGGATACTGTATACGTTAATATGAAGTCCATGGTTCTCATGGCATCCTTCTGAGATTTATAGCTATTGTGTATCTTTCATTTCCTCTCAATCATACTGTGTGGTTATTAATCTGTAATCCTAAAACTGTTTTCATAGTCTGATGAAGATGCCGAGAAGAATGTCGATATGTCCACTGCTGTATCGCTAATAAAGGGTGAACGTAAGAACTTGCGAAGAAAAGAGAAGCGTGCTCGGATAGAGCAAATTCGGGTTATGCTCGGTCTTTCTGATTCTCAAAGGACTCCAATGGTGATGTTGTAATCAACATTTTTTTTGTTCTAAATTTGTTTGAAGTTGTTCCGACAAAGTACATATACTTTGTTTACTCAGAGGAACTCTTGGCTGATAATTTGTTACACACAGTTAACAATTAAAACCATATATCACTAATTCCCATATTCACACTTTTAAAGCCAGGAGAGTCACTAAAAGATTTCTACAAGAGAACGGATATGTACTGGCAGATGGCTGCATATGAGCACACTCAACACACTGGAAAGGTTAGTTTCTGCTCCTTAAGTATCTTCACCCGTCATACCTGTTATCATATTCTCTAGGTTGCTGGCAGTATGAGTTTGCTGTATTTATTCGTGCTCATCCAATGCCAGGAGCTCCGCAAAGATGGTTTTGATCTTGCCGAAACTCGATATAAGGAACTGAAACCCATACTCGACGAGGTAAAATTGTCATGTTGTGTCCCCTTTGAGACAAAACGGTATTTCTGACTTGGTACATATTAACTGACTCTTACACGCCCTCTTCAGCTGGCTGTGCTCGAGGCTGAACAGAAAGCTGAGGAAGAGGCTAGTGCTTCCACTAGTTCCAAGAAAGACACGAAGAAAAGCAAGCAGAAGAGTGGCATGAGATAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA014849