Os12g0623900

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Revision as of 10:37, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0623900| Description = Similar to Ethylene-responsive methionine synthase (Fragment)| Version = NM_001073845.1 GI:115489651 GeneID:4352832| ...")
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Gene Name

Os12g0623900

Description

Similar to Ethylene-responsive methionine synthase (Fragment)

Version

NM_001073845.1 GI:115489651 GeneID:4352832

Length

6052 bp

Definition

Oryza sativa Japonica Group Os12g0623900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:26871476..26877527

Sequence Coding Region

26873141..26873490,26873588..26873675,26874373..26874500,26874578..26874769,26874874..26875076
,26875191..26875354,26875492..26875572,26875665..26875831,26875910..26876015
,26876164..26876414,26876505..26876577,26876646..26876774,26876858..26877226

Expression

GEO Profiles:Os12g0623900

Genome Context

<gbrowseImage1> name=NC_008405:26871476..26877527 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:26871476..26877527 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtctcacattgttgggtacccccgcatgggccccaagagggagctcaagtttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcgaccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtacatccccagcaacaccttctcgtactatgatcaggttcttgacacggctgccatgcttggtgctgtcccagagcgctactcatggactggtggagagattgggttcagcacctacttctcgatggctaggggcaatgccactgtccctgccatggagatgaccaagtggtttgacaccaactaccactttatcgtccctgaacttggtcccaacaccaagttctcctactcttcccacaaggctgtgaatgaatacaaggaggctaaggcgctcggcgttgacaccgtgccagtacttgttggaccagtttcatacttgttgctctccaaacctgccaagggtgtagagaagtcgttcgctcttctttcccttctgagcagcatccttcctgtctacaaggaggttattgctgagttgaaggcagctggtgctacttggattcagtttgatgaacccacacttgttcttgaccttgactctcaccaattggctgcattctctgctgcatacacagaacttgagtcggcactttctggattgaatgtgcttattgagacatacttcgctgacattcctgctgaatcatacaagaccctcacatccctgaacagcgtgactgcttatggttttgaccttatccgtggagccaagactcttgaccttatcaagagtgctggtttcccctctggaaagtacctctttgccggtgttgtggatggacgcaacatctgggctgatgatctcgctgcatctctcactacccttgagtctcttgaggctattgttggaaaggacaagcttgtggtctcgacttcctgctcactcatgcacaccgctgtggatcttgtaaatgagaccaagctcgatagcgagattaagtcatggctcgcttttgctgcccaaaaggtggttgaggtgaatgcccttgctaaggcattggctggacagaaggatgaggcttactttgcagcaaacgctgctgctcaggcctccaggaggtcatcacctcgtgtgacaaacgaggaagtccaaaaggctgctgctgctctgaaggggtctgaccaccgccgtgctaccaatgttagcgctagactggacgcacagcagaagaagctcaaccttccagtccttcctacaaccacaattggttcattcccacagactgtggagctcaggagagtccgccgtgagtacaaggcaaaaaagatctctgaggaggagtacatcagtgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgtccttgttcacggcgagcctgagagaaacgatatggttgagtacttcggtgagcagctttctggttttgcattcactgccaacggatgggtgcaatcttatggatcacggtgtgtcaagccaccaattatctatggtgatgtgagccgccccaaccccatgactgtgttctggtccaagttggcgcagagcatgacctctcgccccatgaagggaatgttgactggtcccgtcacaatccttaactggtcttttgtcaggaatgaccagccgaggtttgagacatgctaccagattgctcttgccatcaagaaggaggtcgaggaccttgaggctggtggtattcaggtcatccaaatcgatgaggctgctttgagagaaggtctgccactccgcaaggcggagcatgctttctacttggactgggctgttcactccttcagaatcaccaactgcggtgttcaggacaccacccagatccacacccacatgtgctactctaacttcaacgacatcatccactccatcatcaacatggacgctgatgtgatcaccatcgagaactcccggtccgacgagaagctgctctccgtcttccgcgagggtgtgaagtatggtgctggcattggccctggtgtctatgacatccactccccaaggatcccgtccacagaggagattgcggaccgcgtcaacaagatgctcgcggtgctcgacactaacattctctgggtgaaccctgactgcggtctcaagacccgcaagtacaacgaggtcaagcccgcccttaccaacatggtttcggccgccaagctcatccgcacccagctcgccagcgcgaagtga</cdnaseq>

Protein Sequence

<aaseq>MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLEKVATDLRAS IWKQMADAGIKYIPSNTFSYYDQVLDTAAMLGAVPERYSWTGGEIGFSTYFSMARGNA TVPAMEMTKWFDTNYHFIVPELGPNTKFSYSSHKAVNEYKEAKALGVDTVPVLVGPVS YLLLSKPAKGVEKSFALLSLLSSILPVYKEVIAELKAAGATWIQFDEPTLVLDLDSHQ LAAFSAAYTELESALSGLNVLIETYFADIPAESYKTLTSLNSVTAYGFDLIRGAKTLD LIKSAGFPSGKYLFAGVVDGRNIWADDLAASLTTLESLEAIVGKDKLVVSTSCSLMHT AVDLVNETKLDSEIKSWLAFAAQKVVEVNALAKALAGQKDEAYFAANAAAQASRRSSP RVTNEEVQKAAAALKGSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTVELRRV RREYKAKKISEEEYISAIKEEISKVVKIQEELDIDVLVHGEPERNDMVEYFGEQLSGF AFTANGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSKLAQSMTSRPMKGMLTGPVTIL NWSFVRNDQPRFETCYQIALAIKKEVEDLEAGGIQVIQIDEAALREGLPLRKAEHAFY LDWAVHSFRITNCGVQDTTQIHTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLS VFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRVNKMLAVLDTNILWVNPDCGLKTRK YNEVKPALTNMVSAAKLIRTQLASAK</aaseq>

Gene Sequence

<dnaseqindica>1666..2015#2113..2200#2898..3025#3103..3294#3399..3601#3716..3879#4017..4097#4190..4356#4435..4540#4689..4939#5030..5102#5171..5299#5383..5751#gtcctcctcctcctcctctcttccatcgccgctgctcgcttcctccccctctcccacggtaagccccgcaccgccgcctctcttcctctcctcttttttgcgttcgtgcgtcgatccgtgtccattcgcgttgcgatcctgttcgtcgtcttgattggatgcatggatggattgattgatcgagagtctttgttccgagttgatgggatccgatctgaatgatgtgtggttaggtgcttagatctgggggattatgctccggaaatggagtggaagattatttagattttttttttgtttctgtcggtgtgtgttgcatgggtccggttacgattggatctgcggttcttccgccgaaaaagtttaggttttattttaaatttcaagtgttcatgccaagcgtggtttgttcactactcactcgtctatccatccggtggttgggttttggatctgatgctgaggtttagtccgggttgacttatgtttttctctatttctgttctgatattctattatatactagaaaaattgcctgctcgttgcaaacaggaaaaattaaaattacataaacattggtacctccattcagttttattgggcatattttgattttgaataatcaaactctgaaattttgatttttgaccaacaattgataaaaagtttatttaatagatttattatacttcaacgtgctttcacaaaaaaaaggttttataagtattaagagtttaaacatgaatatgcatctggtcctgatgttgaccattcctctgggtctgaagattgaaagaacaaaaattgcaacagaagagtaaacagtaatatctcagcttttgtcccttttgttgtatccagaaagttctataaaagaatattgatatgttaagagaatctagaatgccataatattttgtttgtcaggacgctcactaactcaccttaattctaggaatgcttcacacctgacatgaacacttcaatttttttaagtaggtaaagaaatgcattacggtgtactagaccgtgcgatctgtacatgtaggatcgtgcttccagtactatcgcatctactgtcatttggtttccatctcagtgttattgattagaagttaggaattttctgtatgttaataatgaattgttgtttgtatggtatgccaaacaacacccatcaactttgctgcgggcgggtgtgagagggacagtgatctcccaccaattttagttggtcttatgtacccaccctttggggctcggtcctacattctagtgctggttggtggtgtacctaacccatatactagtattagtttagtttattcttctagtgccactggatctggtgatataaccccatctatagggatcagaagatttgtgggagaacataaaacagaaaaagtatgttttaatagttggatggcataaaatgtttttggataaccgcttcaaacgtgatgttagtatccgttcagttggaaaacagtggcatgcctttcattatcgtgtttttttatttaacaaggagttctacatctagtggttagaatatggatctgagtaatcctgttagctaaatcatgaattttcctatgtattcacatggcatttatttgaatcaaactgatggtagtacaattgtattttttttatagaaagatggcgtctcacattgttgggtacccccgcatgggccccaagagggagctcaagtttgccctggagtctttctgggatgggaagagcagcgctgaggatttggagaaggttgcgaccgacctcagggccagcatctggaagcaaatggctgacgctgggatcaagtacatccccagcaacaccttctcgtactatgatcaggttcttgacacggctgccatgcttggtgctgtcccagagcgctactcatggactggtggagagattgggttcagcacctacttctcgatggctaggggcaatgccactgtccctgccatggagatgaccaagtggtttgacaccaactagtaagtcctttgcttccatttaagctgtctgacagtaacattttatttagatttcacattcaacattttgctaactgctgctgttgtgcctttacagccactttatcgtccctgaacttggtcccaacaccaagttctcctactcttcccacaaggctgtgaatgaatacaaggaggctaaggcggtaagatactaggattacatcttacgtctctgtctggttcatgattgttttctctgcctgactacataggcgttgctaacacattcttattgtcattaatgtcttagttcgtaaagttacttattagtttagcgtgttgctttctgctattatagtgcatttgcttaataattttgtcctagaaaagaaattctgatgtacattaaatggcatgcttaccatgattttttttgaagattgtcactccttcagattgatggcctgtaaatcacatgccctccaagtgacagtttgtttaagttcagtgttaatactcgtgtccaagcaaatttttggccccttgtttagtattttgaaactagcaatttcagatttgcaaagactaaaattcactttacatttatgaaataatgtttttttagcactatatgttgtttccatctttctcaaaagatgtccatgttgtttgtggcgaaattgtctgattttacctatgcttaattggtgagtttacctgaaacatgctttggttgaatttactatcttgttccagtttgtgaatagtaacatttctatttttaagcatcaaattctgaattaagtagtattccttctggattgaaaatcatagtgttttcttaaaaattaagatgtaatctggtcgtttgtatgtctcatgtaattgttcttcatgcagctcggcgttgacaccgtgccagtacttgttggaccagtttcatacttgttgctctccaaacctgccaagggtgtagagaagtcgttcgctcttctttcccttctgagcagcatccttcctgtctacaagtaagtgtacaaacaagtctataactgctgctagcgctaaatcttcagttcataatttgatgcatgatgatttgtagggaggttattgctgagttgaaggcagctggtgctacttggattcagtttgatgaacccacacttgttcttgaccttgactctcaccaattggctgcattctctgctgcatacacagaacttgagtcggcactttctggattgaatgtgcttattgagacatacttcgctgacattcctgctgaatcatacaagtatgtttatttcctgtactatcgtatcattaccaaacccgcctttcctttagcatgctttttctttttagtggcagaacactgatactgccttttcactgcaggaccctcacatccctgaacagcgtgactgcttatggttttgaccttatccgtggagccaagactcttgaccttatcaagagtgctggtttcccctctggaaagtacctctttgccggtgttgtggatggacgcaacatctgggctgatgatctcgctgcatctctcactacccttgagtctcttgaggctattgttggaaagggtaagcaattaagcatgaagttattatatctgttatattttaataggtacaatttgctgtatccaataatatcctcaatttctgcacatccaacaatacctttcatttctgcagacaagcttgtggtctcgacttcctgctcactcatgcacaccgctgtggatcttgtaaatgagaccaagctcgatagcgagattaagtcatggctcgcttttgctgcccaaaaggtggttgaggtgaatgcccttgctaaggcattggctggacagaaggatgaggtatggtactctctttcaccctttatttattctctcacctcttagtaagagatcaggcttagttctcaatattattcggagaaacttctgctgctgctcaggcttacttttgtacatttgtaaacaatattgtacaggcttactttgcagcaaacgctgctgctcaggcctccaggaggtcatcacctcgtgtgacaaacgaggaagtccaaaaggctgtaagtaccttgcgtttttggccagcatttgctgatttcatatcaacataacttcacatgtttttcttaaacacatgatattgtttgtgaaggctgctgctctgaaggggtctgaccaccgccgtgctaccaatgttagcgctagactggacgcacagcagaagaagctcaaccttccagtccttcctacaaccacaattggttcattcccacagactgtggagctcaggagagtccgccgtgagtacaaggcaaaaaagtgagtaacagtccacatcaacgcttcacttgtttcccttctttcgtctatattactcatagcaaaatactgctacaggatctctgaggaggagtacatcagtgccatcaaggaggaaatcagcaaggttgttaagatccaggaagagcttgacatcgatgtccttgttcacggcgagcctgaggtcagtatccttgtgtactgtttgtgttttctagactttgcacctggctgtttgagaaaacaaaataaatatatttattgaagcattaacaaagtttggtttgttctgcattgaagtaagctaattggcatgtattttatactttcagagaaacgatatggttgagtacttcggtgagcagctttctggttttgcattcactgccaacggatgggtgcaatcttatggatcacggtgtgtcaagccaccaattatctatggtgatgtgagccgccccaaccccatgactgtgttctggtccaagttggcgcagagcatgacctctcgccccatgaagggaatgttgactggtcccgtcacaatccttaactggtcttttgtcaggaatgaccagccgaggtcagtgcctgttgttgataatgtaatctaatttgttctggttgtgaatgagcattcttttctgagtctgacattcatacgctggctcaggtttgagacatgctaccagattgctcttgccatcaagaaggaggtcgaggaccttgaggctggtggtattcaggttggtcctgttctataatttggttctcaagagaatcttgcttacgtttttttaatggtcctttgcaggtcatccaaatcgatgaggctgctttgagagaaggtctgccactccgcaaggcggagcatgctttctacttggactgggctgttcactccttcagaatcaccaactgcggtgttcaggacaccacccaggtaatttgccttgattacactgtcgctggagcctcgcattgtcatcgcctatcttctggagctaagaaatttctctttgacagatccacacccacatgtgctactctaacttcaacgacatcatccactccatcatcaacatggacgctgatgtgatcaccatcgagaactcccggtccgacgagaagctgctctccgtcttccgcgagggtgtgaagtatggtgctggcattggccctggtgtctatgacatccactccccaaggatcccgtccacagaggagattgcggaccgcgtcaacaagatgctcgcggtgctcgacactaacattctctgggtgaaccctgactgcggtctcaagacccgcaagtacaacgaggtcaagcccgcccttaccaacatggtttcggccgccaagctcatccgcacccagctcgccagcgcgaagtgaggatatccatagctgcaagttcccttcggttgcgaggacgatgccgtcatagccatctgtttttgaataatctgggtccagtggatccaattgtctgtggttaggtttagtcagtctcggtgggaagatccctcatacccgttttacttttgaatcaatttggtggtttttgaggcagtttgtcggtgtatttgtattgtgtgtaatctgagtgggaatcagcagtgtttcatctgcatctgaatcgttgcggatcaaattacaaaattttcaaggagagttcttgatgttatggtcttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0623900, RefSeq:Os12g0623900