BGIOSGA015366

From RiceWiki
Revision as of 04:12, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA015366| Description = cDNA clone:001-015-G12, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA015366, complete gene.| t...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA015366

Description

cDNA clone:001-015-G12, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA015366, complete gene.

LocusTag

OSJNBA0023J03.10

Ensembl Transcript ID

BGIOSGA015366-TA

Ensembl Protein ID

BGIOSGA015366-PA

Length

3599

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:11907305..11910903

Sequence Coding Region

11910355..11910903,11910158..11910266,11908245..11908300,11907980..11908086,11907805..11907892
,11907305..11907496

Genome Context

<gbrowseImage1> name=IndicaChromosome04:11907305..11910903 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:11907305..11910903 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCATGTTCAAAATGGACTACATAAGAAGGCGAAGTTAATGGTCACTGAGCATGAGCTAAGATGCCGTATGAACTCAAGTACAGAAGGAGATTTATTTGATATAGCAAATTGCAGAAGATTTCCCAGAAGCTATCAAGATGTCAACACAGTACAAGCACATGAGCACACAGAGAAGTCCAATAGAAGCAGGTTGATTGGTCGGATAAATTTTGGTGATATTGAGCGTAATCAGCTTCAAGTTAGAGATGTTATTCGCCAAAAGTCCAGTCCAAATTTGCCAGCAAGAAGTGTTCCACTACAAAGTCAGAATGAATTCATATCTGAAGTGAAGAGCTCAGTAACAGCAGTCTCTGAGTCAGCATGCCATGTGAGTAAATCAACAAAAGGACAAGTACCAGGATCTAGCAAATTGGGTCAACTAGCTACACGGAGAAATTTAGAGACTGAAGTTTTGCAAAGTCAGCAAGTTAGCAGCCCAGCGCAATCTAAGACAGGATCTTCTGTACATGAAGATGGTGGAAATTGCTGTAACAAGCCTATGAAAAATGAAATGCTGGATGTGAAACTAAAGCTCAAACAAGTGGAACTGGATGTGCTCAAGCTTCGTTCCAAGCAGGCACAGATAAACAATGTGAAGCAAGGTTTCCTATCATCAGGTCCCCATGCTAATCTAGATGAGGATGCTGACTCCAGAACTGTTCTCGTGACAAATGTACATTTTGCAGCAACAAAGGAAGCATTGTCAGGGCATTTTATGAAGTGCGGCACTGTGCTTAAGATAAATATATTGACAGATGCAATTTCTGGGCACCCTAAAGGGGCTGCATTTGTTACTTTCACTGACAAGGAATCTGTTGAGAAGGCAGTATCATTGAGTGGGTCATCATTTTTCTCAAGAGTTCTAACAGTAATGCGCAAAGCCGAAGCACCTCCAGGTTTTCTGGCATCTGTTCAACCGATCGGGAGGCCTCTACAGTCATGGAACTCACCACCCATCCAGAAAGGGGTGAGTCCAAGGCAGATCCCTGGTTATCACCTCCAATGGAAACGTGAGCAATCTGTGCTGGAGAAATCCCCTGCCAGTTGCCCTACTAACTGA</cdnaseq>

Protein Sequence

<aaseq>MHVQNGLHKKAKLMVTEHELRCRMNSSTEGDLFDIANCRRFPRSYQDVNTVQAHEHTEKSNRSRLIGRINFGDIERNQLQVRDVIRQKSSPNLPARSVPLQSQNEFISEVKSSVTAVSESACHVSKSTKGQVPGSSKLGQLATRRNLETEVLQSQQVSSPAQSKTGSSVHEDGGNCCNKPMKNEMLDVKLKLKQVELDVLKLRSKQAQINNVKQGFLSSGPHANLDEDADSRTVLVTNVHFAATKEALSGHFMKCGTVLKINILTDAISGHPKGAAFVTFTDKESVEKAVSLSGSSFFSRVLTVMRKAEAPPGFLASVQPIGRPLQSWNSPPIQKGVSPRQIPGYHLQWKREQSVLEKSPASCPTN</aaseq>

Gene Sequence

<dnaseqindica>1..549#638..746#2604..2659#2818..2924#3012..3099#3408..3599#ATGCATGTTCAAAATGGACTACATAAGAAGGCGAAGTTAATGGTCACTGAGCATGAGCTAAGATGCCGTATGAACTCAAGTACAGAAGGAGATTTATTTGATATAGCAAATTGCAGAAGATTTCCCAGAAGCTATCAAGATGTCAACACAGTACAAGCACATGAGCACACAGAGAAGTCCAATAGAAGCAGGTTGATTGGTCGGATAAATTTTGGTGATATTGAGCGTAATCAGCTTCAAGTTAGAGATGTTATTCGCCAAAAGTCCAGTCCAAATTTGCCAGCAAGAAGTGTTCCACTACAAAGTCAGAATGAATTCATATCTGAAGTGAAGAGCTCAGTAACAGCAGTCTCTGAGTCAGCATGCCATGTGAGTAAATCAACAAAAGGACAAGTACCAGGATCTAGCAAATTGGGTCAACTAGCTACACGGAGAAATTTAGAGACTGAAGTTTTGCAAAGTCAGCAAGTTAGCAGCCCAGCGCAATCTAAGACAGGATCTTCTGTACATGAAGATGGTGGAAATTGCTGTAACAAGCCTATGAAAAATGTTAGCTTTTATCTTCTTAAGTAACCTCCTTACTACTTGGGCACTTCTAGTAACCTAAAACTGGTCTTCTTCTTTATTGATTATACAGGAAATGCTGGATGTGAAACTAAAGCTCAAACAAGTGGAACTGGATGTGCTCAAGCTTCGTTCCAAGCAGGCACAGATAAACAATGTGAAGCAAGGTTTCCTATCATCAGGTTTGTCTATATTGTTTTGCTTATGGTCAAGGAACCTAGAGTAGATCACTTCGGGATATCATGCTTATATCCTTCCTAATTAATCATGTTAAGAAAAATCGGTCTGCCATTCTATTCTGGCACATCTATGATCTATCTGATGTTCAGATTAAGTTGTGAAATGAGGGGCTGCTGTTTCCTGTTTCTACCATCTACATGCAATTCTGAAGATCAATAATCGTTGATAGTGAAATAACCTAGGTCAAAGTGTACATGGGTCATCTTCCTCCAATAACTTTTTGGTTAATTCTGTAATATGAGGAGTCGTTTATAGTTGAAACATGAGGGAACTCCTTATACATTATGCCATTTACTATCAATGAGAGGCATATGCATGAGAAAGATATCTCATTGGATATAATCATAGGAAACAATAATAATTTTTTTGCCTTGCCTGAATTCCAATATTCTCTAAACTATACCTTCAATCTTTATCTCAAAGTAGCTTCTAATTTTCTTGATCATGCCACAACAAGGTACTAGTACATCACTACATTGTATGCAATGCTTTTTCAAAAGCACATAGAGCAAGGCAGCAGCTTATTGGTGAAGTGTTTTATGCATTTTGCATGTCTGCAGTTCAATTGGCAAAACATTCTTCATTATATTTGTATAGGCACGATGTTTTGTCAATCAAAATGTTTACATTTAAAGTGTGAAAATCTGATAAAACTACACAAACCGTTTATCAAGACATAAAAAGCGAATATAATAGTTTCCTTACTCGAACATTACCTCTGAAGAAGTAAAACTGCTACCAAGGGAGTTCCTTTGTTCTTTTTTCAAGGGAAACTGATAGGCGGTGGGCGGTTATAACAGTCTGCAATTGGCCCATGACTTAAATTTTTATGGGTATGGCTGTCTTTTTCTGGAAACGAAATGGCTATGCGTACGACCAATGCATACAACCCATGTCTGACTCAACTAGTACAGTACATAGGCACAGCTGCTGTTTTCCTGGGCCCAAATGGAAATAAGCTGAGAACAGGGGTTGATGGAGGAGGTGTGGTTGGATGCCCGTTGTATGGCAGGGTCGTGTGTATAGCAGGACTCTTCTGGAAAAGTCCCCATGTAGACACGATTCACCTAAACTCATACTGTAACACCACCAGGAAACTACTCACAAAAGGTTCATTAGAGGTGGTCAAATTAGTTGTGAGGACTAAGGTGTTACACCGGTGCAACTCTGAGTGATGTCAAGTGCATAGTTGATGATTGTTATAGAGTACCAAAGTAAAGGTGAGGAACCAATAATGACAAGGCAGAAAAGATTTTGCAAAGTTGTCCCATGTATTTCAAGAAAAGGTCCATTATTTACCATAGAAGGAGTCCCAGTTCTGCAACTTGCACCAAATAGCTATGTATTTGTTGATTCTGTTTCATGATAGAAGGTTTTGAATCTTGTTAACAATATGCCTGTTATGGACTCATTTATTGGTCGAACTTATCAGCTCAAGAATGCCATTGTGTATTTCAGCAACACCACAGATTAACAGGGTTGAAGAAGGTAGAGTTGTTAGGAATATGTTAGTTTGATTCAATCTAGGACTCTTTTAAGTTAGTAAGGTGTCAATTAAATTATATTAGGAATAATTGTAATTGGGTTAAGCAATAAAAACGATTATTAGTTCAACAGGAGGCATATTCCCCTCTCCAACCAACATTACATCGACATTGATGCCCTGCCCAGAACAATGCCATCATCATCATTTGTGTTCCGTATAATCTTTTTATACAATAGCTCAGGCGTGTGATTCTGATATCCTGCCATTATAATGGATGAACATAAGTTCTAATCATATTTTTGTGTTCCTTTAGGTCCCCATGCTAATCTAGATGAGGATGCTGACTCCAGAACTGTTCTCGTGACAAATGTAAGAACCTTTCTGATTGTTCCTTTTAGGCAATTCCATAATTTCTTGTTTTTCTTCGTGGTAAATATTTTTGTAGAACATAATTCAATTACTCCCTCCGTTCCAAAATATAACAACCTCATCAGCACATACTCATTCCATCTGGATAATTGTTTCAGGTACATTTTGCAGCAACAAAGGAAGCATTGTCAGGGCATTTTATGAAGTGCGGCACTGTGCTTAAGATAAATATATTGACAGATGCAATTTCTGGGCACCCTAAAGGGTATATATACTTTCAAACTATTTTACCCGTGGCATCTATAAGCTGCCCTGTTGTTAATTGTTGGCTTCTTGTTGCATATCCTTGCAGGGCTGCATTTGTTACTTTCACTGACAAGGAATCTGTTGAGAAGGCAGTATCATTGAGTGGGTCATCATTTTTCTCAAGAGTTCTAACAGTATGACCTTTGTTTTCATTATCAACCTCACTCTATACTATTACTATACTTGTTAACTACTACTTCCTCCGTTTCATATTACAAGACTTTCTAGCATTGCCTATATTCATATATATGTTAATGAATCTAGACATATATGTGTGCTTAGATTCATTAACATCTATATGAATGTGGGCAATGCTAGAAAGTCTTATAACCTGAAACTAAGGTAGTAGTACATTGTAACCTTGGATCTGCCTAGGTCAACTACATTCTCATTAACTACTTGTTGTGGTCAACATTCTCATGCCAACACATTCTATTTCCAGGTAATGCGCAAAGCCGAAGCACCTCCAGGTTTTCTGGCATCTGTTCAACCGATCGGGAGGCCTCTACAGTCATGGAACTCACCACCCATCCAGAAAGGGGTGAGTCCAAGGCAGATCCCTGGTTATCACCTCCAATGGAAACGTGAGCAATCTGTGCTGGAGAAATCCCCTGCCAGTTGCCCTACTAACTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA015366