Os12g0640600

From RiceWiki
Revision as of 10:39, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0640600| Description = Similar to Crocetin dialdehyde| Version = NM_001073927.2 GI:297613617 GeneID:4352923| Length = 6837 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0640600

Description

Similar to Crocetin dialdehyde

Version

NM_001073927.2 GI:297613617 GeneID:4352923

Length

6837 bp

Definition

Oryza sativa Japonica Group Os12g0640600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:27691296..27698132

Sequence Coding Region

27691494..27691706,27692592..27692662,27692988..27693002,27693626..27693737,27694667..27694766
,27694906..27694968,27695535..27695645,27695732..27695916,27696329..27696467
,27696701..27696818,27696895..27696996,27697232..27697486,27697643..27697754
,27697916..27697942

Expression

GEO Profiles:Os12g0640600

Genome Context

<gbrowseImage1> name=NC_008405:27691296..27698132 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:27691296..27698132 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggaggcggcgatggcgatgaggtgctgctgctgccggagccgcgccctcgcaggggcctcgcctcctgggcgctcgatctgctggagcgcgccgccgtccgcctcggccacgacgcctccaagccgctctactggctctccggcaacttcgcccccgtccaccacgagaccccgccggccccggccctccccgtccgcggccacctccccgagtgcttgaatggagaatttgtcagggtaggacccaatccaaagtttgtccctgtcgctggctatcattggtttgatggagatggaatgatccatgcgatgcgtatcaaagatgggaaagctacctatgtgtcgagatatgtgaagacttctcgtctcaagcaagaagagtattttggtggagcaaagtttatgaagattggagacctgaagggattttatggattgtttatggtccaaatgcaacaactccggaaaaaactcaaagtattggattttacatatggacatgggacagctaatactgcacttatctatcaccatggtaaacttatggccctgtcagaggcagataagccctatgttgttaaggtccttgaagatggagacttgcaaactcttggattgttggattacgacaaacggttgaaacactctttcactgctcatccaaaggtcgatccatttacagacgaaatgttcgcttttggatattcgcatgaacctccttactgtacataccgggtcattaccaaggatggagccatgcttgatcctgtgccaataacaattccagaatctgtaatgatgcacgactttgccattacagagaattattctattttcatggaccttcctctgttgttccgaccaaaggaaatggtgaagaatggtgagtttatctacaagtttgatcctacaaagaaagctcgttttggtatactccaacgttatgaaaaggatgacacaaacatcagatggtttgaacttcccaactgcttcatattccacaatgctaatgcttgggaagagggtgacgaagttatcctaattacctgccgcttggagaatcctgacttggacaaggtgaacggttaccaaagcgacaatctcgagaactttgggaatgagctgtatgagatgagattcaacatgaaaaccggtgctgcttcacaaaagcaactatctgtttctgctgtagattttcctcgaattaatgagagctacactggcagaaagcagcggtatgtgtattgcgctattctaaacagcatagcgaaggtagcangcattataaaatttgatctacatgctgaaccggagatcagtggctttaaacaacttgaagtggggggaaatgtgagaggaatatttgacttgggacctggtagattcgggtccgaggcaatttttgtgcctagggaacccggtgtatctggagaagaagatgatggttatttgatattctttgtccacgacgagaatacagggaaatctgaagtcaatgtgattgatgcaaagacaatgtctgctgatccggtggcagttgttgagctaccaagccgagttccctacggattccatgctttctttataaacgaggaacaactggcaaaacaatcagcgtga</cdnaseq>

Protein Sequence

<aaseq>MGGGDGDEVLLLPEPRPRRGLASWALDLLERAAVRLGHDASKPL YWLSGNFAPVHHETPPAPALPVRGHLPECLNGEFVRVGPNPKFVPVAGYHWFDGDGMI HAMRIKDGKATYVSRYVKTSRLKQEEYFGGAKFMKIGDLKGFYGLFMVQMQQLRKKLK VLDFTYGHGTANTALIYHHGKLMALSEADKPYVVKVLEDGDLQTLGLLDYDKRLKHSF TAHPKVDPFTDEMFAFGYSHEPPYCTYRVITKDGAMLDPVPITIPESVMMHDFAITEN YSIFMDLPLLFRPKEMVKNGEFIYKFDPTKKARFGILQRYEKDDTNIRWFELPNCFIF HNANAWEEGDEVILITCRLENPDLDKVNGYQSDNLENFGNELYEMRFNMKTGAASQKQ LSVSAVDFPRINESYTGRKQRYVYCAILNSIAKVAXIIKFDLHAEPEISGFKQLEVGG NVRGIFDLGPGRFGSEAIFVPREPGVSGEEDDGYLIFFVHDENTGKSEVNVIDAKTMS ADPVAVVELPSRVPYGFHAFFINEEQLAKQSA</aaseq>

Gene Sequence

<dnaseqindica>199..411#1297..1367#1693..1707#2331..2442#3372..3471#3611..3673#4240..4350#4437..4621#5034..5172#5406..5523#5600..5701#5937..6191#6348..6459#6621..6647#gtgcagtagtgtaagcagaagcagacgcaccaaaagagacgaacactactactagtatagtattccccattggattccatccgccggccggcctgctgcctgcctgccattgatagattccatcgtcgtcgtaggatagagagtactagtttgcaattcaattcaatcccccatacccataggccataggataggagtatgggaggcggcgatggcgatgaggtgctgctgctgccggagccgcgccctcgcaggggcctcgcctcctgggcgctcgatctgctggagcgcgccgccgtccgcctcggccacgacgcctccaagccgctctactggctctccggcaacttcgcccccgtccaccacgagaccccgccggccccggccctccccgtccgcggccacctccccgtacacctcccctatcctatcctcctccttttcttttcattcataaacactactacttccatctgcttgccttgccgagatatttaaccatttgccacatttagatgtgacaattaactttttgccattagactcacatgtcatagacatatgtggactcacatgtcatataggggtggcaaatagttatttgccaaatctctaacagtggcaaatagttaaaagcccctgccttgtctgcttcttattatgtagcactccactctgaaagaaacgaaaaaaaggaggagaagaaatttctccccctttcttcctcctgtactgcccatagctcaaatctttgtcgcctcaacaaaagagattaaaatacactccagattgtcctttccaatggtttgtttgggtatcatatatacgatgaacagtctcactagtcaacgccaattaatgcaccacaccacatactagtactagtcaacgccaatttatgtacactaccaacactaattttttccatctctccttctcatcactatgcatgtagtaacactcaaactgacatcttccattacccctgctctccccttctcttctcctgtaccctattcattcattcattcattcattcatgttttttcttcgcctattcatctctgcactaagatgacacctaggaaccattttgaccaccaaaatctctttatcaaaaattatgcaacaacaacctctatggtggaagcgatcaaacattctgtcgttcacaatgataactgtgtttcaacactacctctacaaactgttcattaggcactcatcaagatcaggtatgcggcctcctcttttttgctttcaccttctcactgacccgtctttggttttccacaggagtgcttgaatggagaatttgtcagggtaggacccaatccaaagtttgtccctgtcgctggctatcattggtattaacccctccctctctctctctctctctctctctctctctctagcttcatcacaattttcctttctcttaaaaagacattattgtaaggattgccatcttgttttcattagtgcgtccaaacaaaaacaaactgtacagattttaaattgtcatccatatgggtttgcatttatgcctctgctttgatgcacatataagggacaattgtactctattttctaaaacacaaaatacatatcctcatacctgttggcctgttgcttccaatatctgtgcataacgtgtttaattgatttcatattctctgtttgtttccacaggtttgatggagatgggtatgtcatattagcctctctgtggtcagatgcatatccttaacggcatacatatctgcttctctctagctaatacatttaattcccagataattattgcattatccacttctttagcagttgactaaggtcttactgtctgcccctaaattggagttttttctttccaataagagtctacatgataaaatctattgttccatgtagtgtttcttagaatttaattttcgcatgtatattgtagtccattgtttaaagcaaattttttttcctctactgtttaaagatagtgtcagactgacagatttgcacacagaacattctgatcttcagagcagatatggcaaaatcgttctttgatgcagatcttacacgttatatatcttcatggtttcatgggcatatttgacgctatgtattgccattttgcagcacttttagtacttctaaattttaatgttttggtgacatattaacagtacctcatagttttataacatatttgcaaacatgatcaaaatgtgttcttttttttattttctggaagtgaaaataggagtttaacaagggcacgtgcgtggaaaaataagatttcaaaatgtgcataactttgtttcttacagaatgatccatgcgatgcgtatcaaagatgggaaagctacctatgtgtcgagatatgtgaagacttctcgtctcaagcaagaagagtattttggtggagcaaagtttatgaaggtaacttcaattgtttgattagacattctcatgtctttgcaattaatcgattgttactgtagtattttcttgactacagctccaaaatgtattctgtttagcttgttggcgagtgtgacttttctagtttgtacataagtttctcaatttaacttaatcttcagattttttgtaatcaggctatgcttagatccaggggtgaaaagttttggcgtcacattggatatacggacacacatttgaagtattaaacgtagactaataacaaaacaaattacagattccgcctgtaaactgcaagacgaatttattatgcctaattaatccgtcattagcaaatgtttactctagcactacattgtcaaatcatggagcaattaggcttaaaagattcgtctcgcaatttacacgcaatctgtgtaattagttttttattttgtctatatttaatactccatgcatgtgtccaaacattcgatgtgacagggtgaaaagtttttgcatgggaactaaacagggcctcagtttactgctgcttcttagcgacataccttacccagcatgattttcttcagcatatttttggttctcggttttctcacagatctctctgtgcttgcatgttgggttgcagtgtcgaatttttgttgatttcatatgcatatcagctttgaacttgtcgtatagtcatagggacctcactttatttatgtcctcttagtttctttgcttctacactaactgcctgactatatagttgacctacggtgacatcaatgtaacttcatgatcatccttaaatgtaccattagaaaattcaagtcctgttgataactacttctaaatcctaactctccagctcttttatggccattgacaatcagtaatacatgcatgtgctttttttacctgattcttacattttacagattggagacctgaagggattttatggattgtttatggtccaaatgcaacaactccggaaaaaactcaaagtattggattttacatatggacatgggacaggttatttttatcttacgcagaacctattcaaatatcatgtttaaatgcaggacaattttctgcactgcatgttgtcattttttttcacgaccatttggtgtaacaccattttattgatttggtgactttgttttttcagctaatactgcacttatctatcaccatggtaaacttatggccctgtcagaggcagataagccctgtaagttctcatcccataatggtaatggctagttgggaaagttgtgacaaaacatggatatagctagacccagtgtggtattttcacatctagcttaaaacgttaatactacatttttctatagccactacacatgccattggaaattcaacagcacgatcctttatttttgacaaacgcgaccaggttgccagcttacttttgtgtaaatggaaaatggcaaaatcccccccccccccaaagctaggagaaaatctacctgtttcatctccaatatcataagaatagcaaaggaatcaatcacttgagatttttacaacagtacaaagcatttccaaatgattattggcttatgaatattgcattgcactatgcatgattatcgtgtcagactatcacaatatgttatatgtggtcgatttcatataccatcataggaaatttattttgtttctcatgaacagttctgcatgccagctgatttttattttagatttagatctatgtaaattgtaaaataaatatttttgcaactgtgaaactctggtttctgcgttcgttttcagatgttgttaaggtccttgaagatggagacttgcaaactcttggattgttggattacgacaaacggttgaaacactctttcactgctcatccaaaggtcgatccatttacaggtacacaacagtaactcatgttatttcttgctttccctattgtttatcgtaattgtgttaaaaggttttatttaccggtctttcagacgaaatgttcgcttttggatattcgcatgaacctccttactgtacataccgggtcattaccaaggatggagccatgcttgatcctgtgccaataacaattccagaatctgtaatgatgcacgactttgccattacagagaattattctattttcatggaccttcctctgttgttccgaccaaaggtaagtggtgtttttgcttgtctagcaatttgtggccaaggtcattgacagactttttttttctgccccttattttactacgtcaataaacaatcatagtacggtttgcagtgctttattctaaccgaagaacattgaccaaaacataggatactgtttcagcatgtacagattgttacttgttaatacacatacctttatagtggtttgctggttttagaatcctaagggaacatccgttgttttttcttaagatttccatgatgaatactccatatgtatgcattccgttcaagaatacctagtcaatatatgctgcagagggtagcacttgtgttcattgaagcatttgataaatgatatcaaaacctcttcataatttgactcttgccctgtcccatcattttataaggaaatggtgaagaatggtgagtttatctacaagtttgatcctacaaagaaagctcgttttggtatactccaacgttatgaaaaggatgacacaaacatcagatggtttgaacttcccaactgcttcatattccacaatggtatgccattggtaaccttcttgaacttcacatgtacaacattttgtacattggacatgatgatgaataactgtaacgacaaatttgtcttggccttccaaagggtgctttgctaggaatgtgagaacataaaaccaaaaacatagagttaaaaaaagggaactagaagatatcagtatttcatctcatgctgttctacgttatctgctcattagaattctctcttgttacagctaatgcttgggaagagggtgacgaagttatcctaattacctgccgcttggagaatcctgacttggacaaggtgaacggttaccaaagcgacaatctcgagaactttgggaatgagctgtatgtacctacaattcagtcgccatttaaattccaagaaatgaaatgcttgacccagtgttatatatatacttaggtatgagatgagattcaacatgaaaaccggtgctgcttcacaaaagcaactatctgtttctgctgtagattttcctcgaattaatgagagctacactggcaggtaacttttagtggaagtctcaacttcaataagtaatgattcttctctaggaaatcatgggcaacctgttcatatcagctgcattgttcatttctgttttgtcgatgatttgatgatggccatatatatatcaagcactatatacgaaagtcagcatcatagagaacttagacttggctgcttcctgaatcacttgactcacatgcttctaacgtgcaaaatttggtgaaaacagaaagcagcggtatgtgtattgcgctattctaaacagcatagcgaaggtagcangcattataaaatttgatctacatgctgaaccggagatcagtggctttaaacaacttgaagtggggggaaatgtgagaggaatatttgacttgggacctggtagattcgggtccgaggcaatttttgtgcctagggaacccggtgtatctggagaagaagatgatggttatttgatattctttgtccacgacgagaatacagggtactcattatcttttccttccctaccaattaactgctccatgcgtgtatgttgtatgttagttgctgtagtctgatacaaaacatgcatgcccatctgttgctctccaatttttatagtttacactatcaaatttgttttgtgtcgttggtgtaggaaatctgaagtcaatgtgattgatgcaaagacaatgtctgctgatccggtggcagttgttgagctaccaagccgagttccctacggattccatgctttctttataaacgaggtacgaaaaccattcgaattgtatgtacctatgtagatatatatagagaagactttaaattgttttgagctcatacactttccgttttctctggtcttcaatttgggcgattctatgtgaatatgaatatgatgtgatatggtcaatttgccctttgacaggaacaactggcaaaacaatcagcgtgacaagtgacagcggactgcatacatcctacagtaacttgttatattttagtcggagggaaatgatatatacatatgaatgtacatgtgtatcctcttactcggggaaataattggcttaaggtacatatatgtttaactcgaattgaacaattactcctatattaattacttattaagggagggttattat</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0640600, RefSeq:Os12g0640600