Os08g0104300

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Revision as of 12:43, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0104300| Description = Similar to RING finger family protein| Version = NM_001067312.1 GI:115474360 GeneID:4344437| Length = 4079 bp| Defi...")
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Gene Name

Os08g0104300

Description

Similar to RING finger family protein

Version

NM_001067312.1 GI:115474360 GeneID:4344437

Length

4079 bp

Definition

Oryza sativa Japonica Group Os08g0104300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:227237..231315

Sequence Coding Region

227936..228176,228571..228795,229147..229551,230120..230736

Expression

GEO Profiles:Os08g0104300

Genome Context

<gbrowseImage1> name=NC_008401:227237..231315 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:227237..231315 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaattgctgttcaagtgaagcggttttaagttccaaagtggcgcttctgaattcactcttctgtactatagtattgccaaaggagaattgctctaataagatgaactgtacaaaaggagggggatttccccttttgttttgcgcagtcatttgtctcatggcccaacagggggcttgcaatgtggtgctaatagcgaataacactaccttgtcatttgatgatgtcgaggcaacttttactccagaagtgaaagattcaggtgtaaatggtgcaatttacgctgtggaacctctggatgcatgtagtccattgagaaagaaagcagccaatggtcctgtttcaccatttgcactggtcatacgaggtggttgccaatttgacgataaagttagaaatgcacagaatgccggatttaaggctgtgatagtatatgatgatgaagacagtggtgtcctggtttcaatggctgggagctcgtccgggatctacatatatgcggtattcctctctaaggcttcaggagaggttttgaagaaatattcaggtcaaagtgatgtagaggtgtggatactaccagtatatgaaaactcagcttggtctatcatggcaatttctttcacatcactgcttgctatggctgctgttctagctacttgtttctttgtgaggagacaccagataaggcgggacaggggaaggattcctgtaacccgggaatttcatggaatgagcagtcaattggttaaagcaatgccaagtcttatttttacaaaagtgcaagaagacaatagtacatcatcatcttgtgccatttgcttggaagactacagttttggagaaaagctaagagtgttgccttgtcgtcacaagttccatgcgacttgtgtggacatgtggttgacctcgtggaagacattctgccctgtgtgcaagcgagatgcaagtgctggaacctcaaaaccccctgcatcggagtccacccctttgctttcttctgttattcatctgtctgctgaatcaacagctttgtcttcttttcggtcaacggtggcagtatctccccctaggccaataagacgtcatccttcatcacagtccacatcccgcgcttactccatttccagtgccccccgcaattataaccttcaaagatattacactaactcaccttatattagtacgagtagaagcaatgtagatcttgcaaatatgtcatcacaatggtctcacactccgcaccaagcatccatgcattctctaagaagtggccatttgtctctaccgatcaacatcaggtatacaataccacatgtttctcgttctgactatggatctgccagcctgggtttatcccatgattcctgttctcaccatggatctccgagttattatcatagctctttgggccagcaacgttcttacctgatgcaccgcaccgagtcagggccaagcctgtctactatggtgctccagtcgccacaatag</cdnaseq>

Protein Sequence

<aaseq>MNCCSSEAVLSSKVALLNSLFCTIVLPKENCSNKMNCTKGGGFP LLFCAVICLMAQQGACNVVLIANNTTLSFDDVEATFTPEVKDSGVNGAIYAVEPLDAC SPLRKKAANGPVSPFALVIRGGCQFDDKVRNAQNAGFKAVIVYDDEDSGVLVSMAGSS SGIYIYAVFLSKASGEVLKKYSGQSDVEVWILPVYENSAWSIMAISFTSLLAMAAVLA TCFFVRRHQIRRDRGRIPVTREFHGMSSQLVKAMPSLIFTKVQEDNSTSSSCAICLED YSFGEKLRVLPCRHKFHATCVDMWLTSWKTFCPVCKRDASAGTSKPPASESTPLLSSV IHLSAESTALSSFRSTVAVSPPRPIRRHPSSQSTSRAYSISSAPRNYNLQRYYTNSPY ISTSRSNVDLANMSSQWSHTPHQASMHSLRSGHLSLPINIRYTIPHVSRSDYGSASLG LSHDSCSHHGSPSYYHSSLGQQRSYLMHRTESGPSLSTMVLQSPQ</aaseq>

Gene Sequence

<dnaseqindica>700..940#1335..1559#1911..2315#2884..3500#tttcgcatctctctcagcctcaccgtcgtcgcctcccttaatctctcatgcttatgctcatggcagccgacgtctccatccccacgccgcctctctgctctctgctctccctccacacctactgattcttcttccccttcccttctccgctttccctgccttgcaaatccgccaaaggttcgccctttttcctcttccaccggttgcgttttttttttcttttttttttgggggtggaacgtcccgcgagtgttgggattgggccttcctcgttgcctcatcttgatctgatatggtgatattctcttattggaacgggttagggctcatcttagtgttcctcttgcgtgattccgagctaaaggtgccgtctttcctcccaaaccaccaccattcatttagtgttccggtggtgatccagtgcaacaaattgggtagtaattttgttggtttttggagattgctcaattttggggcaaaatttgagaagaggatggttaagttctcgtcagagcctcatcaggggtaaaaatatcttgctcctcctgtgagagaggaactgttttagcctctctgttttgctactataggatttttccttggctgcgatgctacaaagattgttttggacctgtgcatgatgaaatgttccgtatgtttatttcgctggctcaattttgcaggacttttagctgatcgatgaattgctgttcaagtgaagcggttttaagttccaaagtggcgcttctgaattcactcttctgtactatagtattgccaaaggagaattgctctaataagatgaactgtacaaaaggagggggatttccccttttgttttgcgcagtcatttgtctcatggcccaacagggggcttgcaatgtggtgctaatagcgaataacactaccttgtcatttgatgatgtcgaggcaacttttagtgagtgctacaacttaccaagtatccttgcatttcactactgatcaacaaccaatgcaggcactgcagagtaaacgttaattgtttttatgttacgtgctgcctctataggttatgaatatttatttggatattgcactagtttgtttcctaaacaaatgctgctaatcttgtgtgacaattgatgaatgggatgattgcttttcttgcatcatgctagttgtactgtatgggtcttctagctgttgtacctgtattagcttttactaattcttctctagctatttgcatgtttctttacatttgttagtggcttagtgcgcagtgctatactagtgcctgcatcattctatttgtgttatggacaacttattggcatatcaatcacttgcagctccagaagtgaaagattcaggtgtaaatggtgcaatttacgctgtggaacctctggatgcatgtagtccattgagaaagaaagcagccaatggtcctgtttcaccatttgcactggtcatacgaggtggttgccaatttgacgataaagttagaaatgcacagaatgccggatttaaggctgtgatagtatatgatgatgaagacagtggtgtcctggtttcaagtaattctactcgaatctaccctatgtctcttatggtcctgaaatcaattttcttatgtctaacgatatgtcacccgtgattattacatataaaaaagtgtttctgtgctttgatctgatcgtttataatgtatcatgatactttcttagctacatgttagggatggctgaaaaagaattttcatcatgtctatgtcacaagatgtaaattgtaggaataattagcacccttttaaaaaaacaaaaagaagaagaagcaataatcagcatccttgtataaactggatatattacttgctctgtgcatatatatgcaatagccatttgagttttgactagaaattgttacagtggctgggagctcgtccgggatctacatatatgcggtattcctctctaaggcttcaggagaggttttgaagaaatattcaggtcaaagtgatgtagaggtgtggatactaccagtatatgaaaactcagcttggtctatcatggcaatttctttcacatcactgcttgctatggctgctgttctagctacttgtttctttgtgaggagacaccagataaggcgggacaggggaaggattcctgtaacccgggaatttcatggaatgagcagtcaattggttaaagcaatgccaagtcttatttttacaaaagtgcaagaagacaatagtacatcatcatcttgtgccatttgcttggaagactacagttttggagaaaagctaagagtgttgccttgtcgtcacagtatgttcctctcacatttaaagatcacagttattttagaatagctttgtcagacttgatgatttgggttctcactgtcttcatgttttgtacagccagattaatctgtttctagcagatattgccttttacatattaggatttatggatacaaacgcaacttagcattactaggattaatagaagtgctgttctggcgtgattgataaaatcttccatcaagatcaatattggtttatctatttgtttcctttgctgcttgagatgccaactcaattaaatatgtgctcgctggatttcattttattcctgattccatagcggagtaaatcttggcaacagtgctttatctctgaatttttagttgcgttggtggatggttccacagcattgcttgtgacaagatgatcatttagtgattccacaatgtaattcatatgaaatgattactgcatccatttaatgcaactgctttagatagttgagtattgcattttagttgatccctcttctatgtggtattatttttgacatgtgtcctgagactttggttgtttcgcttttacagagttccatgcgacttgtgtggacatgtggttgacctcgtggaagacattctgccctgtgtgcaagcgagatgcaagtgctggaacctcaaaaccccctgcatcggagtccacccctttgctttcttctgttattcatctgtctgctgaatcaacagctttgtcttcttttcggtcaacggtggcagtatctccccctaggccaataagacgtcatccttcatcacagtccacatcccgcgcttactccatttccagtgccccccgcaattataaccttcaaagatattacactaactcaccttatattagtacgagtagaagcaatgtagatcttgcaaatatgtcatcacaatggtctcacactccgcaccaagcatccatgcattctctaagaagtggccatttgtctctaccgatcaacatcaggtatacaataccacatgtttctcgttctgactatggatctgccagcctgggtttatcccatgattcctgttctcaccatggatctccgagttattatcatagctctttgggccagcaacgttcttacctgatgcaccgcaccgagtcagggccaagcctgtctactatggtgctccagtcgccacaatagagtcagtagcagtacaatggcgaatcaggagaagtctatcagctgcggtttaactcgatcattacgtcaggcctatgtacagcattgtcttgattctgatggaagcttgtctgctgtgacatcggatcagtcgctaccaagatgctgattgatcttacgaagttcactgtttcatgagcatttgtgcaagcccctgctagatttgttcctgggagatgcaaataaaacagaaaaatcctatgcgacacaaaactggcaggttcatgcaaagttaattcatggaactatttcgtgccagccaccattgtgattcaacaaggttacttacattgtctgtacggaggggaaattggtgatcttaaatcgaagaaagacttgctgagttttgctgaagaagcaaatatccatcagtctacaaggaatggtttgactttgcgtattgtttgaggcttgtattataggtgatgactttagagttggtgtaatggtgtgtttcttttacattagttattttgtcatgcgtataaatgttacagcttagcaataatctgttagtcggtgaatgttttgtagctctct</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0104300, RefSeq:Os08g0104300