BGIOSGA016334

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Revision as of 04:27, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA016334| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA016334, complete gene.| tag = H0502B1...")
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Gene Name

BGIOSGA016334

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA016334, complete gene.

LocusTag

H0502B11.5

Ensembl Transcript ID

BGIOSGA016334-TA

Ensembl Protein ID

BGIOSGA016334-PA

Length

4685

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:17844584..17849268

Sequence Coding Region

17844584..17844919,17845262..17845408,17845514..17845669,17845812..17845934,17846024..17846192
,17846327..17846409,17846584..17846685,17846762..17846850,17846968..17847058
,17847188..17847301,17847677..17847753,17847826..17847904,17848002..17848070
,17848177..17848352,17848447..17848503,17848620..17848710,17848820..17848918
,17849083..17849268

Genome Context

<gbrowseImage1> name=IndicaChromosome04:17844584..17849268 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:17844584..17849268 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCCAGCTGCATATATACGCCAGCTGCGGCTGCGCACGCGCCCGCGCTGCGATCCCGCTTCCCGCGCAGGCTCAGGCATCCGCTGCGGCTCTACCTTGGGTGATGTCCGTGACTTCGCCGCCGCTGCTCCGGCGAGGAGGGTGGGCGATGGGCGCGAGCGATCACGCCGCGGTGGCGGCGGCGGCGAGCGGTAACGGCAAGCCGCGGGCGAGGAGGCCCTCCGCCGCCGCGGCGGCCGTGCTGGGCGAGCCGGTGGCGGCGTCCGACGACCACGGCCTCGTCCACCCCAGCGCGGACTTCGCCTCCCAGGCCCTCGTCTCCTCCACGCAGCAGTACCAAGAAATGTACCGACGTTCGATCGACGATCCGGCCGGGTTCTGGTCGGAGATCGCGGAGACGTTCTACTGGAAGCACAAGTGGAACCCTGACGAGGTCTGCACCGAGAATCTGGATGTCACCAAGGGGCCGATCAAGATCGAATGGTTCAAAGGGGGCAAGACCAACATATGCTACAATGCGGTGGACCGCAACGTGGAGGCTGGCGACGGCGAGAAGATAGCGATGTACTGGGAAGGGAACGAGCCCGGCCAGGACGCGAAGCTCACCTACTCCGAGCTCCTGAACAAGGTTTGCCAGCTGGCAAATTACCTGAAGAGCGTCGGCGTCGGGAAGGGTGATGCCGTGGTGATCTACCTGCCGATGCTGATGGAGCTGCCCATTGCGATGCTCGCGTGTGCTCGGATTGGCGCTGTTCATTCGGTTGTGTTTGCTGGCTTCTCTGCTGACGCACTAGCACAAAGAATCATTGACTGCAAGCCTAAGGTTGTGATTACGTGCAACGCGGTGAAAAGGGGAAAGAAACTCATAGCTCTCAAAGATATAGTAGATGTGTCGCTGGCTGACAGTGCGAAGAATGGAGTCGATGTAGGCATTTCTTTGACATACGAAAATCAGTCGGCAATGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAGAGGATCCATTGTTTCTTCTATATACAAGTGGTAGCACAGGAAAGCCAAAGGGTGTATTGCATACAACAGGAGGCTATATGGTGTACTCTGCAACAACATTTAAGCACGCATTTGATTACAAGCCATCAGATATATACTGGTGCACTGCAGACTGTGGGTGGATTACTGGGCATAGTTATGTGACATATGGTCCTCTCCTGAATGGAGCCACAGTTCTTGTTTACGAAGGGGCTCCAAACTATCCTGATCCTGGTCGTTGTTGGGACGTTGTTGACAAATACGGGGTGACGATATTTTATACTGCACCAACACTTATTCGTGCACTCATGCGTGATGGTACCGAGTATGTTACTCGGTATTCTCGTAAATCTCTTCGAGTTCTAGGAAGCGTAGGCGAGCCAATCAATCCCACTGCTTGGAGATGGTTCTATGATATTATTGGTGATGCAAGATGCCCAATATCAGACACTTGGTGGCAGACTGAAACTGGTGGTTTTATGATCACTCCTTTACCTGGCGCTTGGCCTCTGAAACCCGGATCTGCGACATTTCCTTTCTTCGGTGTACAGCCAGTAATAGTAGATGAGAAAGGGAAGGAAATGGAAGGAGAATGCAGCGGATACCTTTGCATAAAGAAGTCATGGCCTGGGGCTTTCCGGACACTTTATGGAGACAAGGACAGATATGAAACCACATACTTCAAGCCATTTGCTGGCTATTACTTCTCCGGTGATGGTTGCAGCAGGGACAAAGATGGATACCATTTTCTGACTGGACGGGTTGACGATGTTATCAATGTCAGCGGCCACCGGATTGGGACAGCAGAGGTTGAGTCTGCTCTGGTTTCACATCCAAAATGCGCCGAGGCCGCTGTTGTTGGAATTGACCATGAGGTTAAAGGCCAGGGAATTTACGCTTTCGTGACATTGGTGGACGGTGTTCCTTACAGCGATGAGCTACGGAAAAGCCTCGTTATGACTGTTCGCAACCAGATTGGGGCGTTCGCGGCGCCGGACAAGATCCACTGGGCGCCGGGGCTCCCGAAGACGCGGAGCGGCAAGATCATGCGGAGGATCCTGCGGAAGATCGCGTCCAGGCAGCTGGACGAGCTCGGCGACACCAGCACGCTCGCCGAACCAGGAGTCGTCGACCAGCTCATCGCGCTCGCCGATAGCTAG</cdnaseq>

Protein Sequence

<aaseq>MAQLHIYASCGCARARAAIPLPAQAQASAAALPWVMSVTSPPLLRRGGWAMGASDHAAVAAAASGNGKPRARRPSAAAAAVLGEPVAASDDHGLVHPSADFASQALVSSTQQYQEMYRRSIDDPAGFWSEIAETFYWKHKWNPDEVCTENLDVTKGPIKIEWFKGGKTNICYNAVDRNVEAGDGEKIAMYWEGNEPGQDAKLTYSELLNKVCQLANYLKSVGVGKGDAVVIYLPMLMELPIAMLACARIGAVHSVVFAGFSADALAQRIIDCKPKVVITCNAVKRGKKLIALKDIVDVSLADSAKNGVDVGISLTYENQSAMKREDTKWTSGRDVWWQDVVPNFPTKCDVEWVDAEDPLFLLYTSGSTGKPKGVLHTTGGYMVYSATTFKHAFDYKPSDIYWCTADCGWITGHSYVTYGPLLNGATVLVYEGAPNYPDPGRCWDVVDKYGVTIFYTAPTLIRALMRDGTEYVTRYSRKSLRVLGSVGEPINPTAWRWFYDIIGDARCPISDTWWQTETGGFMITPLPGAWPLKPGSATFPFFGVQPVIVDEKGKEMEGECSGYLCIKKSWPGAFRTLYGDKDRYETTYFKPFAGYYFSGDGCSRDKDGYHFLTGRVDDVINVSGHRIGTAEVESALVSHPKCAEAAVVGIDHEVKGQGIYAFVTLVDGVPYSDELRKSLVMTVRNQIGAFAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQLDELGDTSTLAEPGVVDQLIALADS</aaseq>

Gene Sequence

<dnaseqindica>1..336#679..825#931..1086#1229..1351#1441..1609#1744..1826#2001..2102#2179..2267#2385..2475#2605..2718#3094..3170#3243..3321#3419..3487#3594..3769#3864..3920#4037..4127#4237..4335#4500..4685#ATGGCCCAGCTGCATATATACGCCAGCTGCGGCTGCGCACGCGCCCGCGCTGCGATCCCGCTTCCCGCGCAGGCTCAGGCATCCGCTGCGGCTCTACCTTGGGTGATGTCCGTGACTTCGCCGCCGCTGCTCCGGCGAGGAGGGTGGGCGATGGGCGCGAGCGATCACGCCGCGGTGGCGGCGGCGGCGAGCGGTAACGGCAAGCCGCGGGCGAGGAGGCCCTCCGCCGCCGCGGCGGCCGTGCTGGGCGAGCCGGTGGCGGCGTCCGACGACCACGGCCTCGTCCACCCCAGCGCGGACTTCGCCTCCCAGGCCCTCGTCTCCTCCACGCAGCAGGTGATCGCCGATACACGCCTCTCTGCTTTTCTTACTGCTTTGCCGATTTCCTCTCGGTTGCTGTCAATTCGCTCTCCCCCTCGAACTGGCGGCGCATCGCGCGTTCAAAGGCCGTACCTTCAATTTGAGGCGCGCAGCGATCCATCCATCGCTGGCCGCAGAGGCGCAGATAAGGCAAGAGTGGCAGACAGCGACGGCGCAGTCGTAGTAAACCCTGGGTTGCCAGGGTTAAATTCCCCATTTTCTTGCAACAAGTTGGTCACTGTGAATTTATCGATTACTCGATTTGGTTCTTGGTTGTGACGAGTGTTCCGGGTGTTTTTGCACATGGCCGGCGATCAGTACCAAGAAATGTACCGACGTTCGATCGACGATCCGGCCGGGTTCTGGTCGGAGATCGCGGAGACGTTCTACTGGAAGCACAAGTGGAACCCTGACGAGGTCTGCACCGAGAATCTGGATGTCACCAAGGGGCCGATCAAGATCGAAGTAAGCTAGTACTGTCACTTTTCTCGACTGATGATGAACAATTGTCTGAATCCGATGCTCGATTGCCATGAGAGCCACGAGAGTAATCTAAGAATTTGTTTGCAGTGGTTCAAAGGGGGCAAGACCAACATATGCTACAATGCGGTGGACCGCAACGTGGAGGCTGGCGACGGCGAGAAGATAGCGATGTACTGGGAAGGGAACGAGCCCGGCCAGGACGCGAAGCTCACCTACTCCGAGCTCCTGAACAAGGTTTGCCAGGTAAAGATCACACGCGCTCCTATCGTAGATACGCCGAAACATTTGCACGTAATGCCTCCGTGGCGTCGTATAAAGTGAGGTTGATTTTGGTGTCCTGTGCTAAATTGTTGTGGTGTGATCGTGTGAATCTGTGGCATGGCAGCTGGCAAATTACCTGAAGAGCGTCGGCGTCGGGAAGGGTGATGCCGTGGTGATCTACCTGCCGATGCTGATGGAGCTGCCCATTGCGATGCTCGCGTGTGCTCGGATTGGCGCTGTTCATTCGGTAATTGTCACAGCAGTTTAAGATGCTAATTGTCATGTGTCTTTTTTAATGAAGTTCCATTTCATATTGTGATGCCGAATTGTGTTCAGGTTGTGTTTGCTGGCTTCTCTGCTGACGCACTAGCACAAAGAATCATTGACTGCAAGCCTAAGGTTGTGATTACGTGCAACGCGGTGAAAAGGGGAAAGAAACTCATAGCTCTCAAAGATATAGTAGATGTGTCGCTGGCTGACAGTGCGAAGAATGGAGTCGATGTAGGTATGTACAATCTGACTTCTATGAGTTGGTCACTGCCTAAATTAGCCTCGTCTGATGTCATGCTGAGAATCCCTCTAATTGTGGATACAGTTCTTGAGGAGTTTCCTCATGCTTATCTTTGTTGTGCTGAGCAGGCATTTCTTTGACATACGAAAATCAGTCGGCAATGAAGAGAGAAGACACAAAATGGACGTCAGGCAGAGACGTTTGGTGGCAGGTACGCCCAAAACAAACAACTTCAATGCTATCCAAAAAGTACCACGCCACGTCATATGTGTTAGGAAATAGGAACAGAACATCTGCAGAACAGCTGTGTTATTTGGAAGATTTCTTTTTAAGTCCTCCATTTCATGTTATATCACTAAAATTTGAGATGATGTGCGTCCCCCAGGATGTTGTGCCCAATTTTCCAACAAAATGTGATGTGGAATGGGTAGATGCAGAGGATCCATTGTTTCTTCTATATACAAGTGGTAGCACAGGAAAGCCAAAGGTACCCTAAACCACATGGTTTGTTACTTTGTTAGCCTATCCTATGGCCAAACATTAACATATTGTGAGGTCTGCAGGGTGTATTGCATACAACAGGAGGCTATATGGTGTACTCTGCAACAACATTTAAGCACGCATTTGATTACAAGCCATCAGATATATACTGGTATGATGCTAGTTTTTTAGCATCTTCGGGTAGTATAAACTTGTTCCTAATGTTAATAGGAAATTTTCTGCAAGCTGCATTATTTCTTATTAGATTTCCCTGTTTGACTTGCATCAGGTGCACTGCAGACTGTGGGTGGATTACTGGGCATAGTTATGTGACATATGGTCCTCTCCTGAATGGAGCCACAGTTCTTGTTTACGAAGGGGTAATTTCAGAGAACTTTTTAATTGATATTATGCCTAGAATCACAATAATAACAATTGTGTGTCTTTCGGACTAGTTTTAGTCCTGCCATGTTTGTAATTTGCAATGCCTTTGCTGATGCTACTTGTAGGCTCCAAACTATCCTGATCCTGGTCGTTGTTGGGACGTTGTTGACAAATACGGGGTGACGATATTTTATACTGCACCAACACTTATTCGTGCACTCATGCGTGATGGTACCGAGGTACACTTCTTAATTTTTTGTGTTATTACTACCCATGACTGTTGCCATCCAGCAATTATTTATGTAATATTATGGCATTGTGATAAGATTATAAAGAAACAACCCGAAGATACATCTTGAACCTAGTTACTTTTCAAGGGAAAAAATCAAACAAATATTGAACCACATGTCCTGTTTATTTCCTTCATACATTCCACCACATTTGAATCAGAGCGCCTTTGATCAAATTTTCATCAAGTTTCAAAAGACTGTTTTTAAAAATAACTGCACAAGAACATTTCTTCCAGAGTGAAATTTATAACTGATGTTTGCTTTGTTTCAGTTTATGTTCATGGCTCATTGTGTATCCTTTATGATTTTCTGATGTATTTGCAGTATGTTACTCGGTATTCTCGTAAATCTCTTCGAGTTCTAGGAAGCGTAGGCGAGCCAATCAATCCCACTGCTTGGAGGTTTGTGATGATTCCTGGGTCAAAAATTATAATATACTCAAAAGGTCTTACATTCTCTTTTGTTCATTTCAGATGGTTCTATGATATTATTGGTGATGCAAGATGCCCAATATCAGACACTTGGTGGCAGACTGAAACTGGTGGTTTTATGGTAATTGTGTCTTTACATATCTAGTGAGAAATTCGGTGATTCTAAAGTGAGTTGCATCTGATGAATCAAATTGAAATTCAATGTTTATTTCTGTCAGATCACTCCTTTACCTGGCGCTTGGCCTCTGAAACCCGGATCTGCGACATTTCCTTTCTTCGGTGTACAGGTATACAATGACTGACCTTTGGTATACATTTTTTACTTGAAGTGAGTTTGTTATACTATTTCAATCCCCTCTCTTATGTTGTAATTACTGTGCACGTGATTGACAGCCAGTAATAGTAGATGAGAAAGGGAAGGAAATGGAAGGAGAATGCAGCGGATACCTTTGCATAAAGAAGTCATGGCCTGGGGCTTTCCGGACACTTTATGGAGACAAGGACAGATATGAAACCACATACTTCAAGCCATTTGCTGGCTATTACTTCTCCGGTGATGGTTGCAGCAGGTAACTCAATCAAATAGTTCTTCAATGAGTGGAATATACAGCTTTGCAGAATTACCGGATGTTTACACACTGGCAAATGTAATTTGAATGCCAGGGACAAAGATGGATACCATTTTCTGACTGGACGGGTTGACGATGTTATCAATGTCAGGTAATTCAGCAACCTATTCTATTCATGCTTATTCTTGATTTCAATTCAATGCTTAGTTTTCTCAGAAAAAAAAATCAAGCTATAAGTAATTGACCCTTCTCTGAAAAAAATCATAGCGGCCACCGGATTGGGACAGCAGAGGTTGAGTCTGCTCTGGTTTCACATCCAAAATGCGCCGAGGCCGCTGTTGTTGGAATTGACCATGAGGTTCATCCCTATACCTACATCTTGCTCCTTTGTGTTGGCTCCATGTTTCTGCACCCTCTCCCCTAGTTCCACGAAAAACCAGGTCTTAAATCAGCAATGCCCGTTTCAGGTTAAAGGCCAGGGAATTTACGCTTTCGTGACATTGGTGGACGGTGTTCCTTACAGCGATGAGCTACGGAAAAGCCTCGTTATGACTGTTCGCAACCAGGTATTTTCTTCAGACTTTACACTGATGGTGATACAGTGTTGTTCTCCTGCTGCATTGCTCTCAGCCGTTTTCCCCGTGGAAGACGCGCACACGTCAACTACTGTTTTCAACTGTGGAGTTTTCACCTGATGATGCATAATACCTTCACTTGTTTCTTGTGGCAGATTGGGGCGTTCGCGGCGCCGGACAAGATCCACTGGGCGCCGGGGCTCCCGAAGACGCGGAGCGGCAAGATCATGCGGAGGATCCTGCGGAAGATCGCGTCCAGGCAGCTGGACGAGCTCGGCGACACCAGCACGCTCGCCGAACCAGGAGTCGTCGACCAGCTCATCGCGCTCGCCGATAGCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA016334