BGIOSGA016459

From RiceWiki
Revision as of 04:29, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA016459| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA016459, complete gene.| tag = H0525C0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA016459

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA016459, complete gene.

LocusTag

H0525C06.4

Ensembl Transcript ID

BGIOSGA016459-TA

Ensembl Protein ID

BGIOSGA016459-PA

Length

5285

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:19845510..19850794

Sequence Coding Region

19845510..19845686,19846909..19847030,19847127..19847571,19847661..19847767,19847872..19849204
,19849312..19849539,19849631..19849861,19849958..19850217,19850332..19850794

Genome Context

<gbrowseImage1> name=IndicaChromosome04:19845510..19850794 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:19845510..19850794 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGTGGTGCGGGAGCCGGTGGCGATGGAGATACCGGCGGTGGAGTCGTCGGCGGCGGGGAGGATGCCGCCGAGGATCAGGCGGCGGTTGCTGGAGGGGAGCCGCGTCGGAGGCGGAGCGCCGACGAGCGCGGAGGAGATCGAGGCGAAGCTGAAGGAGGCGGAGCTCCGGAGGCAGCAATTCCATGAATGGGTGTCCTGCAAAGCGAGGAAGAAGCCGCGGAGCCCATCATGGTCATCACAAGAGGAAGATCAAGGTCAGCGCCTCGAAGCGAAGCTTCAGGCCGCCGAGCAGAAAAGGTTGAGCCTCTTGGCAAAGGCACAGAACAGGCTAGCCAAGTTGGATGAACTCCGACAAGCGGCGAAGAACATCGTGGAAATGCGGATCGAGAAAGAAAGGGAAGAACTCGGGACTCGAGTCGAGTCTCGTGTTCGTCAAGCAGAGGCAAATCGCATGCGTCTTTTGCATGCACATATGCAGAAGCGGGCGGCAATGAAGGAGAGAACGGCGCGGTCCCTTGTGCGGAAACAGACATCTGAGAGGAAATACACGGAGCGAGTCAAGTCTTTGATCTTACAAAAGCGCAATGCTGCTGAAAAGAAGCGACTGGCATTGCTGGAAGCTGAGAAGAGGAAAGCCCAGGCTAGGATTTTGCACATCCAACGAGCTGCCAAGACTGTATGCAGCAAGAGAGAATCAGAGAGGAGACAGTTGCAAGAACAGCTAGAAAGCAAGCTTCAGAAGGCAAAAAGGCAGAGAGCTGAGTACTTGAAGCAGCGGGTAAGTCCCCGTAGTTCTGCCCATGCTGATTACATCAAGCATGCAGAATTTCTTTCAACAAAGCTGGCAAGATGCTGGAAAAGATTTTTGAAATCTAACAAGACAACATATGCACTGGTTCAAGCTTATGACGCCTTGGGAATTAATGAGATGTCTGTCAAATCTATGCCATTTGAAAATTTAGCTATGTTGATGGAATCTCCAACGACTCTCCAGACCACCAAGGCAGTGCTTGACCGGTTCGAGAAACGTTTGCTTCTTTCTCAGCCAACTGGTTCATCATCAGCCGAGAACATTGATCACCTTCTGAAACGCCTTGGATCTCCAAAGAGGAAGGCACCTGCTAGCAGATCTAGGGTAGCTGCGAAAAAGCCAGCGAAGGGTTCCGAGACAAGCAAGCTTTCTAGATACTCACTGCGGGTAGTCCTCTGCTCTTATATGATACTGGCTCATCCAGGTGCTGTATTAAGTGGACAAGGGGAGAAGGAGAATCTACTTATGGAGTCAGCAGAAAACTTTGTTAAGGAGTTTGAGCTATTGGTTAAGACAGTACTTGATAGACCAGGAGGTGCCTCGACGCAATCGACTGATGCTGCCAGTCAGAAAAAGTTCAGGACTCAGTTGGCTGCTTTTGATAAAGCATGGTGCGCTTACCTTTACCACTTTGTTGTGTGGAAACTGAAGGATGCCAAATCATTGGAACAAGATCTTGTCAGGGCTGCATGCAAGCTTGAGCTGTCAATGATGCAAACATGCAAGTTAAGTTCAGATGGGCAGTCACATGACCTTTCTCATGATATGAAGGCAATTCAGAAACAGGTTACTGATGACCAGAAGCTGTTAAGAGAGAAGATTCAGCACCTAAGTGGCGATGCAGGCATCGAGCGGATGAACTCTGCTCTTTCGGATACAAGGTCAAAGTTCTTTGAGGCGAAGGAAAACGGAAATCCATTAGCAACATCTGTTGCAAATGTATCTACTCCTTTGAGCATTAATTCATCTGGACAGGTTCCAAACCCTACTTCCAAGCCTACTGTGGAAGGATCAAGTTTCACTGCCCAATCTTTGCCTGGAGCTGCTTCATCGTCAAGCAGTACATCTCCAATGAAACCGCCGACGGACAATGAGCAAATGGTCAATGAGATGCTTCATGAGGACGATGTTTCTTTTGCTCGCAACTCTGATAACGTCAGTTCCGCGGAGAAGGACTTTCAGGCCAAAGTGAAAGCAACGATGGAGAAAGCCTTTTGGGATCTTGTTACTGATTCGATGAGAGGGGACAAACCAGATAATAGCCAATTAATTAACCTCGTAAAGGAAGTCAGGAATTCGTTACATGAGTTGGCCTCAAATGAGTTGAAGGAGGAAATTCTTGAGAACATTGACCTCGAAATTTTGTCTCAGGTGCTTCAGTCAGGCTCCCAGGACACGCGATATCTGGGGCAGATTTTGCAGTACTCCCTGGATATGGTCAGGAAACTATCTGCCCCTGCAAAGGAAGATGACATGAAGAGGAGTCATGAGAAATTGTTAAACGAGTTGGCTGCAAGTTCCGAAGTTAATGACAATGGTATCAGCTCCTTTGTCATTGCTGTCATCAAGGGCCTGCGTTTCACTCTCGAAGAAATAAAGCAACTGCAAACTGAAGTTAGCAAGGCTCGCATCCAGCTCATGCAACCAATTATAAAAGGCTCTGCCGGAGTGGAATACCTGCAGAAGGCTTTCACGGATCGCTATGGACCTCCTGCTAATGCATCAGTGTCTCTCCCTATAACTAAGCAGTGGGTTTCGGCAACGAAGAGCATCGTGGAACAAGAGTGGAGCTCACATTTGGAGTCTCTCCAAGCTTTGCCAGCAGATCATGCTCAGCACGTTGTTCCGGTACTTCGAGCTGGTCACGGTGCTCCAGCGCCGCAGGCTTCTTCGTCTGCAGCTAGCAGTTCTGGTCTCCCAGAATGCAAGGGTGAGAAGATTGACAAGCTGACAAGGGTTGGCTTGTTGCAACTTATCAGCAATGTGGAGGGCCTGAACATGCAGTCAACCCCTGAGACCTTCCAAATTAATCTGCTGAGGTTGAGGGCTGTGCAAGATCAGTTTCAGAAGGTGATAGTGATCGCGACGAGCATGCTTGTCCTGCGTCAAGTTCTGATGTCGAAGATCGCTCCTCCGGAGCTACAGAATACCATCTCAGAGCTCTACGACGCTCTCGTGAAGCTCCTCGACAACAACGCTGACGCATCAACGAGGGAGATCGTGGAGGCGATGACGCGCTCTCTGGCCTCGGTCGGCTCTCTGCCGGAGGAACAGATTCAGGACACGACAGAGCTAGCAACCAAGATGCTTCTCAAGAGCCTCCAGGCCGGCGACATCGTCTTCGGTAAGGTGTCCCGGGCGGTCTACTTTGCCTTCCGCGGCGTCGTCCTCGGTGGCGGCGCCAAGGGCAAGAAGCTAGCCGAAGCGCCGCTGCGACGCCTCGGCACGGCGAAGCTCGCCGACAGGGTTGTCAAGGCCGGGGAGGTGCTGATAAAGATGGCAGTCATATCAGAGAAGGTCCATGGACCATGGTACAAGGCACTTGCCTTGTGA</cdnaseq>

Protein Sequence

<aaseq>MVVREPVAMEIPAVESSAAGRMPPRIRRRLLEGSRVGGGAPTSAEEIEAKLKEAELRRQQFHEWVSCKARKKPRSPSWSSQEEDQGQRLEAKLQAAEQKRLSLLAKAQNRLAKLDELRQAAKNIVEMRIEKEREELGTRVESRVRQAEANRMRLLHAHMQKRAAMKERTARSLVRKQTSERKYTERVKSLILQKRNAAEKKRLALLEAEKRKAQARILHIQRAAKTVCSKRESERRQLQEQLESKLQKAKRQRAEYLKQRVSPRSSAHADYIKHAEFLSTKLARCWKRFLKSNKTTYALVQAYDALGINEMSVKSMPFENLAMLMESPTTLQTTKAVLDRFEKRLLLSQPTGSSSAENIDHLLKRLGSPKRKAPASRSRVAAKKPAKGSETSKLSRYSLRVVLCSYMILAHPGAVLSGQGEKENLLMESAENFVKEFELLVKTVLDRPGGASTQSTDAASQKKFRTQLAAFDKAWCAYLYHFVVWKLKDAKSLEQDLVRAACKLELSMMQTCKLSSDGQSHDLSHDMKAIQKQVTDDQKLLREKIQHLSGDAGIERMNSALSDTRSKFFEAKENGNPLATSVANVSTPLSINSSGQVPNPTSKPTVEGSSFTAQSLPGAASSSSSTSPMKPPTDNEQMVNEMLHEDDVSFARNSDNVSSAEKDFQAKVKATMEKAFWDLVTDSMRGDKPDNSQLINLVKEVRNSLHELASNELKEEILENIDLEILSQVLQSGSQDTRYLGQILQYSLDMVRKLSAPAKEDDMKRSHEKLLNELAASSEVNDNGISSFVIAVIKGLRFTLEEIKQLQTEVSKARIQLMQPIIKGSAGVEYLQKAFTDRYGPPANASVSLPITKQWVSATKSIVEQEWSSHLESLQALPADHAQHVVPVLRAGHGAPAPQASSSAASSSGLPECKGEKIDKLTRVGLLQLISNVEGLNMQSTPETFQINLLRLRAVQDQFQKVIVIATSMLVLRQVLMSKIAPPELQNTISELYDALVKLLDNNADASTREIVEAMTRSLASVGSLPEEQIQDTTELATKMLLKSLQAGDIVFGKVSRAVYFAFRGVVLGGGAKGKKLAEAPLRRLGTAKLADRVVKAGEVLIKMAVISEKVHGPWYKALAL</aaseq>

Gene Sequence

<dnaseqindica>1..177#1400..1521#1618..2062#2152..2258#2363..3695#3803..4030#4122..4352#4449..4708#4823..5285#ATGGTGGTGCGGGAGCCGGTGGCGATGGAGATACCGGCGGTGGAGTCGTCGGCGGCGGGGAGGATGCCGCCGAGGATCAGGCGGCGGTTGCTGGAGGGGAGCCGCGTCGGAGGCGGAGCGCCGACGAGCGCGGAGGAGATCGAGGCGAAGCTGAAGGAGGCGGAGCTCCGGAGGCAGGTAGGTGTCCCTGTCCGGGTTCCCTTTCCGTCGCTTTTTTTGTTTTTGTTTTTCTTTTCTTTCATTTCGTCCTTCGCGGTGGATTGTGGGGGGACGAGAGTGAACTGTGAATTCGAAGCTTTTGGAGCCTTTTGATTTAATTTGAGTTGCTTTGTTTCGGTTTCGAGTTTCGTAAGAAATGTTTTACTACTGATTAAACCATAGTGCCCTTTACATGCTGATGAACAGTTCAGAGTGGTGGTTTTGATGAATTTCGCTGCTATTTTTAGACTAGGATTAGTCCTTAATTTTCAGATTGTTTTTTTTTTGGGGGGGGGGGGTACTCACGACCAGTTCTTTCTTAATCACTTGTGTTCTACTTTAATTGGAAACTTATTTTGGCTGATTAGTGGAGACGCAAAGTTGGGATTACGTGGAAGGATTTCTGTGCAGTGAGGTTCTTTTTTGTTTTTGGTGGTTGGGATTCCTGGTGGGGAGTTGAAGTAACATTCTTTGGGGGATTCTGTTCTTGGTAGGTAGTCGTGAGATGAAGTTGGGTTCACGTGTGCCTCGAATTCGATTTCTTTTCCATTCGATTTTCTCTCAGCCGCATGATTTTGCGGCTCTGGATTAAAGCGTACTTTCCCCATATAAAAGGTCCCGTTTTTATCTGTTTGTTGGATATACACTGCACTAATAATTTAATGCAGTATATAATTATCTTTTGGTTTCTACCTGCGGTTTGCTAAAGAGTAATCAGTGGATATCAGTAACATATTTAGTTGTCTGCATCGAGTTACGACAGGTTGCCTGTAAAATAATTTCTTTTTTTTTATATTCAAATTAGGAAGATAATATTTGTTGTAGAAAAAGGGTCATGAGCAAACAATTCAGCACATGGTGTCCCGTCGGTGAAAAGATTATGGTAGTTTGGTATGAATAGTTTGTGTACCACCGACCACACTTGGATTCGCTTAGAAGTTAGAAGTAACTTTCGTCGCACTTGTAGTACTGAAAATTTGGTGACCAGTAAGTAATAGGGGTGAAACTTTTGTTGGTTGATGTGATTTGGTAGGTTCAGTTCACTTGAAGTTTTTTTCTTCTTCTTTTTGGGACCGTATCGTATGACTCGTATTTGGGTCTAGTATATTTGATTGATTTGTTATTAAGATGTTGGTACTGTATTTATTGATAAATGATTGATCAACATAGCTTATGGTCATATGTTGTTTGCACTTTGCAGCAATTCCATGAATGGGTGTCCTGCAAAGCGAGGAAGAAGCCGCGGAGCCCATCATGGTCATCACAAGAGGAAGATCAAGGTCAGCGCCTCGAAGCGAAGCTTCAGGCCGCCGAGCAGAAAAGGTAATGAAAAAAAACAGTGCCTGATATTAGTTATTTGCGGTCTTATGCAATTAGAGGAGCTCTGAGAGTCTGATACTAATTATTTGTATCTTGCAGGTTGAGCCTCTTGGCAAAGGCACAGAACAGGCTAGCCAAGTTGGATGAACTCCGACAAGCGGCGAAGAACATCGTGGAAATGCGGATCGAGAAAGAAAGGGAAGAACTCGGGACTCGAGTCGAGTCTCGTGTTCGTCAAGCAGAGGCAAATCGCATGCGTCTTTTGCATGCACATATGCAGAAGCGGGCGGCAATGAAGGAGAGAACGGCGCGGTCCCTTGTGCGGAAACAGACATCTGAGAGGAAATACACGGAGCGAGTCAAGTCTTTGATCTTACAAAAGCGCAATGCTGCTGAAAAGAAGCGACTGGCATTGCTGGAAGCTGAGAAGAGGAAAGCCCAGGCTAGGATTTTGCACATCCAACGAGCTGCCAAGACTGTATGCAGCAAGAGAGAATCAGAGAGGAGACAGTTGCAAGAACAGCTAGAAAGCAAGCTTCAGAAGGTATGTTTGTGCTCTCATATTATACTCTGATATTGTTGTTTTAGCCCTTCTATTCTATTTCTTACAGTTAAGTTAACTTAATGGAACAGGCAAAAAGGCAGAGAGCTGAGTACTTGAAGCAGCGGGTAAGTCCCCGTAGTTCTGCCCATGCTGATTACATCAAGCATGCAGAATTTCTTTCAACAAAGCTGGCAAGGTATGGTGTCACACAGTTGATTTTTGGAATATTATTTTCTTGCATTTGCACATGTGAAAGTTTTAACTAATTGGCAATGTTTTTTCCATTTTGTTGTACTTCAGATGCTGGAAAAGATTTTTGAAATCTAACAAGACAACATATGCACTGGTTCAAGCTTATGACGCCTTGGGAATTAATGAGATGTCTGTCAAATCTATGCCATTTGAAAATTTAGCTATGTTGATGGAATCTCCAACGACTCTCCAGACCACCAAGGCAGTGCTTGACCGGTTCGAGAAACGTTTGCTTCTTTCTCAGCCAACTGGTTCATCATCAGCCGAGAACATTGATCACCTTCTGAAACGCCTTGGATCTCCAAAGAGGAAGGCACCTGCTAGCAGATCTAGGGTAGCTGCGAAAAAGCCAGCGAAGGGTTCCGAGACAAGCAAGCTTTCTAGATACTCACTGCGGGTAGTCCTCTGCTCTTATATGATACTGGCTCATCCAGGTGCTGTATTAAGTGGACAAGGGGAGAAGGAGAATCTACTTATGGAGTCAGCAGAAAACTTTGTTAAGGAGTTTGAGCTATTGGTTAAGACAGTACTTGATAGACCAGGAGGTGCCTCGACGCAATCGACTGATGCTGCCAGTCAGAAAAAGTTCAGGACTCAGTTGGCTGCTTTTGATAAAGCATGGTGCGCTTACCTTTACCACTTTGTTGTGTGGAAACTGAAGGATGCCAAATCATTGGAACAAGATCTTGTCAGGGCTGCATGCAAGCTTGAGCTGTCAATGATGCAAACATGCAAGTTAAGTTCAGATGGGCAGTCACATGACCTTTCTCATGATATGAAGGCAATTCAGAAACAGGTTACTGATGACCAGAAGCTGTTAAGAGAGAAGATTCAGCACCTAAGTGGCGATGCAGGCATCGAGCGGATGAACTCTGCTCTTTCGGATACAAGGTCAAAGTTCTTTGAGGCGAAGGAAAACGGAAATCCATTAGCAACATCTGTTGCAAATGTATCTACTCCTTTGAGCATTAATTCATCTGGACAGGTTCCAAACCCTACTTCCAAGCCTACTGTGGAAGGATCAAGTTTCACTGCCCAATCTTTGCCTGGAGCTGCTTCATCGTCAAGCAGTACATCTCCAATGAAACCGCCGACGGACAATGAGCAAATGGTCAATGAGATGCTTCATGAGGACGATGTTTCTTTTGCTCGCAACTCTGATAACGTCAGTTCCGCGGAGAAGGACTTTCAGGCCAAAGTGAAAGCAACGATGGAGAAAGCCTTTTGGGATCTTGTTACTGATTCGATGAGAGGGGACAAACCAGATAATAGCCAATTAATTAACCTCGTAAAGGAAGTCAGGAATTCGTTACATGAGTTGGCCTCAAATGAGTTGAAGGAGGAAATTCTTGAGAACATTGACCTCGAAATTTTGTCTCAGGTAAGGACTCGGTGGTCTTGACAAAATAAAATAGTTAGTATTAATTTGCTTTTGTTAAACCCGGTATATTTTGAATTAATGTTGTTGTTATTTTTTATGGATGAAAGGTGCTTCAGTCAGGCTCCCAGGACACGCGATATCTGGGGCAGATTTTGCAGTACTCCCTGGATATGGTCAGGAAACTATCTGCCCCTGCAAAGGAAGATGACATGAAGAGGAGTCATGAGAAATTGTTAAACGAGTTGGCTGCAAGTTCCGAAGTTAATGACAATGGTATCAGCTCCTTTGTCATTGCTGTCATCAAGGGCCTGCGTTTCACTCTCGAAGAAATAAAGGTTTGTTCCTTGTTAACACCTTGAATTAGTCCTGACATAGATTGCACTTACATTGCGCCGTGTTTTCCTAACATTTTTCTGTGATTAACAGCAACTGCAAACTGAAGTTAGCAAGGCTCGCATCCAGCTCATGCAACCAATTATAAAAGGCTCTGCCGGAGTGGAATACCTGCAGAAGGCTTTCACGGATCGCTATGGACCTCCTGCTAATGCATCAGTGTCTCTCCCTATAACTAAGCAGTGGGTTTCGGCAACGAAGAGCATCGTGGAACAAGAGTGGAGCTCACATTTGGAGTCTCTCCAAGCTTTGCCAGCAGATCATGTAGGTTTCTACGATCAAAACAATTTACAGTTGTATTAGCTTAGGCAGCAGTCTAAGTTTTTCTCTGACTGACACGAATTTATCCCTTATTGACAGGCTCAGCACGTTGTTCCGGTACTTCGAGCTGGTCACGGTGCTCCAGCGCCGCAGGCTTCTTCGTCTGCAGCTAGCAGTTCTGGTCTCCCAGAATGCAAGGGTGAGAAGATTGACAAGCTGACAAGGGTTGGCTTGTTGCAACTTATCAGCAATGTGGAGGGCCTGAACATGCAGTCAACCCCTGAGACCTTCCAAATTAATCTGCTGAGGTTGAGGGCTGTGCAAGATCAGTTTCAGAAGGTGATAGTGATCGCGACGAGGTAAATAAATATCATCCCCCCCCCCAACCCCCAATACTTTGAACTAAACCGGTCATTCAGAACAATTGATTTCTACGATAACTGAAATCAATTTACCATGTCTGTCTGTTCCAGCATGCTTGTCCTGCGTCAAGTTCTGATGTCGAAGATCGCTCCTCCGGAGCTACAGAATACCATCTCAGAGCTCTACGACGCTCTCGTGAAGCTCCTCGACAACAACGCTGACGCATCAACGAGGGAGATCGTGGAGGCGATGACGCGCTCTCTGGCCTCGGTCGGCTCTCTGCCGGAGGAACAGATTCAGGACACGACAGAGCTAGCAACCAAGATGCTTCTCAAGAGCCTCCAGGCCGGCGACATCGTCTTCGGTAAGGTGTCCCGGGCGGTCTACTTTGCCTTCCGCGGCGTCGTCCTCGGTGGCGGCGCCAAGGGCAAGAAGCTAGCCGAAGCGCCGCTGCGACGCCTCGGCACGGCGAAGCTCGCCGACAGGGTTGTCAAGGCCGGGGAGGTGCTGATAAAGATGGCAGTCATATCAGAGAAGGTCCATGGACCATGGTACAAGGCACTTGCCTTGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA016459