BGIOSGA016470

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Revision as of 04:30, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA016470| Description = Protein phosphatase methylesterase 1| Definition = Oryza sativa Indica Group BGIOSGA016470, complete gene.| tag = OS0...")
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Gene Name

BGIOSGA016470

Description

Protein phosphatase methylesterase 1

Definition

Oryza sativa Indica Group BGIOSGA016470, complete gene.

LocusTag

OS04G0443500

Ensembl Transcript ID

BGIOSGA016470-TA

Ensembl Protein ID

BGIOSGA016470-PA

Length

6280

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:20228927..20235206

Sequence Coding Region

20228927..20228961,20230295..20230379,20230501..20230571,20231562..20231676,20231833..20231912
,20232251..20232335,20232418..20232498,20233030..20233124,20233247..20233297
,20233816..20233896,20234609..20234681,20235007..20235084,20235174..20235206

Genome Context

<gbrowseImage1> name=IndicaChromosome04:20228927..20235206 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:20228927..20235206 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAACAAGACCTCGCGCATGTAGATATATGCAGCCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTTTTCAATGTGTACATGGCCGAATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAACTCTCAGCAGCGATGTCATAGCTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGCATGGGCGGTTCCGTCGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGTAGTTGAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTATTGAATGGAGTGTCAAAGGTGGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATGAATCAAGGGAATGCTATACGTTTCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGATTCCTGGACTGATTAAAAAATGGCAGCATTAG</cdnaseq>

Protein Sequence

<aaseq>MEQDLAHVDICSHSLHKYAPLDWSAYFDEERRVAIPDTEDVFNVYMAESEGPVVFCLHGGGYSGLSFALAASRMKEKARVVSMDLRGHGKSTTSDDSDLSIETLSSDVIAVLRTLYGDSPPAIILVGHSMGGSVAIHVAAKKVIRNLHGLVVIDVVEGTAMASLIHMQKILANRAQHFPSIEKAIEWSVKGGPLRNIDSARVSIPSTLKYDESRECYTFRTPLEETEKYWKGWYEGLSEKFLSCPVQKVLLLAGTDRLDRALTIGQMQGKFQMVVVRHTGHAIQEDVPEEFASHILNFIARNKIGPNGVEIPGLIKKWQH</aaseq>

Gene Sequence

<dnaseqindica>1..35#1369..1453#1575..1645#2636..2750#2907..2986#3325..3409#3492..3572#4104..4198#4321..4371#4890..4970#5683..5755#6081..6158#6248..6280#ATGGAACAAGACCTCGCGCATGTAGATATATGCAGGTGCATGCAGACAACGAAGACGCCCAAGCTATGAACCTAACAATAGCCATGGCCAGCCAGAAACGGAAAAAAAAAAGAAACGCGATTAAATATTTTTTTAAAAAATAAATTATACGCCTGTTAGAGATTAAACACAAGATTTTAGGATTAACATCACGCGTCATTTATCACTGTACCATGAAACGCACGTCCGGCCGTCCAGAAACAACGGATGCTCTGCCGCTCTGGCTCGGTCGGTTGCTGGTCGCATCGTCCGTTGCCAGTGCCACATGTGCGGTGAGCTAGCCTCCACGACGAGTCCATGTGATACATCCCCGCGAGGCGGCAGCGCGGGCCCCACGTGCCCAGGAGGCAATACCAGCCCGGTTATATCTGCACTCGTCGACTAATTCTTGCATTTTGCCTGTGCACATGCGACCAATGATGTGGAAGCGAAGCCGCAATGATAATAAGGGTATGTTTGGTACAGCTCCAACTTCTAAATTTTGGAGTTGTGGAGCTGTCTAAATCTAGCTCCACAACTCTAGTTTATTTTGTGAGAGAGATTCATCCAGCTCAACTCCCAGTTTTGGTGGAGCTGAAACTGTTTGGCTAAGCTCCACCTCCAGGAGCTGGAGCTGTACCAAGCAGACCCTAACTCGTCCTCCCGACCTATGCACGTGTGTATTTTTGCATTACCTCTGTCATCTCATTCAATCGCGTACGGAGGATCAGCGGATTGATGCAAAGGTTTCAGGCTGGCTGTAATTCGATCGATGATAAAAGCTGGACACAGGAAGGATCTTGGTGTCAATAATTTTAAGAAAGAACAATGTATTTCCTTGCAACATATCAAACGGGACGAGATGACGAGAGTCGCTACTCGAAGAGACTCGAATCCGAACTGATGGGTGCATGATCCGTGCATATGCCAGCCATCCCAACCATAGCGCTATGAGCGTGTTACATCGGTATACAAGCGCATGTGAGATTTGCTTCATTACAAGTTATGTATGCAGTATATTTGGAGCTGAAGACATGTAATTAAAATACTGGAGATATGACTTTTATATTTTTGTTTTTATCGGAAAAAATTAGGTACCGATAAATTAAAACACTCATAAATTAATTACTTCACTCGTCCTATATTTTAATAGATTATATTTTAAGACTAAGGATAGTAAGAAAAATACTATAATACTCATATTAAATGATATTTGGTTGTAGGCGAGTTAGTGAGTGGGTAGTTGAGGGGTTAAATAGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTGGCCTGACCTTCATCATCCATCCCCCCTCGCGCAGCCACTCGCTCCACAAGTACGCGCCGCTGGACTGGTCGGCCTACTTCGACGAGGAGCGCCGCGTCGCCATCCCCGACACCGAAGACGTGCGTTGCGCTTGCGCGTCCTGGGAGTAGAGGACCATTCTTTTAAAAATTTTCTCCCGGCCGGTGTGATCTTGTAAATAAATATATCATGTTCCCTTTTATGGTGTGGTTTTCCTTGTAGGTTTTCAATGTGTACATGGCCGAATCGGAGGGGCCTGTCGTGTTCTGCCTGCATGGTGGCGGCTACTCCGGGTATGTCTGCTCCACGGGCTAACATGCCGAATTGTCCGTTTCTCCGGTGAATTGCGTGGATGTTCATGGCATTTCAGTTAACAACTTGCTGGAAATGATTAGCATGGACCCAAAAATGATTTTCTGAATTGGGTGTAAAAAAAATGCTGGATATGAAAGGTGGGACTTTCATATCAATGATATTAAGCAGGGAGTGAGTCTCGAACCCAGGCCGGCTAGCCGACCAATTTGCGGTGCTAGCCAGTAAGACTTTGGACCCAGGCCGGATTGGATGTAGGTATGTGGTTTACATGGTAATAGTCTTATTGAGGATGGTCCTGTGGGCCAAAAAAAAACTCACAGACAGATTGAAGTTATCAGCACTTAAAGTGCCGAGGGCTGAGCTGCAATAATCCTTCTTGTGTTATTTTACTTTTTAAGGATAAAGGATTAAATGGTAATACTGTAAAATGCAGAAGTGTCTTATCTTTTTGGATATCTATAGAAGGCCTTCTATAGAGCCTTCTTTGCACTAGGGAAAATGAACCAAACCCTACTTGTGTTGCAGCGTACTCCCTCCGTCCCAAAAAAAGTGAATCTAGGACTGGATGTGACACATTATAGTACAACGAATCTGGAGAGGGGTATGTCCAGATTTGTTGGATTAGGATGTGTCACATCCGGTACTAGTTTTTTTTTTTGTGGGACGGAGGGAGTAGAATTTGTTGGTAAATTTTAGTTTTGATAATGATTTGACAAAAGAATCGAGATAAATGCAGAAAGCCTGGAATTAAATTGGTTTTATCGTGAAAATCGAAAGCGTTGCTGTTTAATCTTGATTCTATTTTGGGTAGGGAGCATAAGAAACTATCATTTCCTTTTTTATTCAAATTAATCATGCATAAGTTACTTTATTTGACTTGATTATTACTCCTTATGAAATGATGCAATAAGTCTTAAATTAATATATGTGTTCTTACATTGTGTTGATTATTCCCCAATCTACCTTAGGCTTTCGTTTGCTCTAGCAGCAAGTCGTATGAAGGAAAAGGCTCGTGTTGTTTCTATGGATCTGCGAGGGCATGGAAAATCAACCACAAGTGATGATTCAGATTTGTCCATTGAAGTATGTCCTTCAATTTGTACACGAATTAATCCTCTTGATAAAACATTTGCTCTTCCTCATATAATAATATATGTCATTAACTCAACTTAATAACTTATTAATTTTTGCTGAACACATGAATACAATATTTTACCTTTTCCATCTTTGCAATTGCAGACTCTCAGCAGCGATGTCATAGCTGTTTTACGCACATTGTATGGAGATTCTCCACCAGCCATTATACTTGTTGGGCATAGGTGAGTTGGCACCATGGACTTTGTACCCATTGCACGTGCACTCTTTATCTGAAATAAGATATTAAGATTGACTGAAAGTTCTACTTCTCTATGCTATTTCTCTCCAAAGGATAATGTAATGTATAAAATCCTTTGAATGGTGCACATATACCATAATCTGGGAAGTATAGCTAAAAGGCAATTTGACTTTTAGTTTCATTTGTGCTTCTACTTCAGTGCTTAATACAATGCTTTTGTTTTCTTTTCCGGATTTGGCAGGCTATTTTTTTTTCATTACTAGCATTGCCATTAGCCTCGAGTGATTGAAATTCAATTAAATAGTTATTTATCCTTTTTAGCATGGGCGGTTCCGTCGCTATACATGTGGCCGCAAAGAAAGTTATTCGCAATCTTCACGGTCTTGTTGTTATTGATGTAGTTGAGGTTAGCTATTCCTTACTTAACCACTTATATTATGATTTACAATTTTTCTTATTGCTGATATCAAATGCTTTTTCCAAAACAGGGAACAGCAATGGCTTCATTGATTCATATGCAGAAGATCTTAGCAAATCGAGCGCAACATTTCCCTAGCATTGAAAAAGCTGTATGGTGATGTAGTCCTCCATGACAATTTGAATATTGCTAGCAATCTTATTATTTAGAAAACATATCTTGTTTAGCTTATTAGTTACTCCCTCTGTCCCAGAATATAAGAAGTTTTAGAGTTGGACATGGTTATTAAGAAAGTAGGTAGAAGTGAATGGTGGAGGGTTGTGATTGGATGAGTAGTGGAGGTAGGTGGGAAAAGTTAATGGTGGAGGGTTGTGATTGGTTGGGAAGAGAATGTTGATGGAAAAATTGTTATATTTTGGGACGGAGGGGAGTATCATTTATGAGATATGTTCCTGTAAAGAAACATTCTGATGAAAAAAAGGTATGGAGGAATGCATTTGATGTTTTAAGCTCATAAACGTCATTGGCCTGTAATAGGAGGAAATCAAACAAACATGCAATGATGGTCAAGATCTTGAATTTCTAATAATAGGCATGCTAGTAAAGTCAGTTGATTATGGTCATGCTTACTATTGCAGCAGTAAACCTTGTTTCAATAATATCCTTTCACGTAACTATGCAGATTGAATGGAGTGTCAAAGGTGGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCATCTACCTTGAAATATGATGAATCAAGGGAATGGTAAAAAACTAGCTTGCATAGTACATGCTTGTATTTTGCAGTTCAATGCGCATATGCAAAACTCTGCAAAAAAGCTTTACCCTTCCTTGAAAACCTAAGTGAACTTTCATACTTGGTTTCAGCTATACGTTTCGAACTCCTCTCGAGGAAACAGAAAAATACTGGAAAGGATGGTACGCTTTCAGTTTACTGGTGTTCTTTATGTTTCAATCGCTTCTGTTTAAATTCTGGTATTTCTGAACGCCTTTTTGTGATCATTACAATTTAAAAGCATGTTATTACTACTACTATATACTGTATAAAAGTATTTGGTCATATTTAATTACAAGTATCTAACTCTTCATTACCTACGTAACAGTATTGATACTACTGTATTCTCTTATCCCTGTCATGTTTTGATTTAACAAAGATCTACTTTTTTGGTTCCTACACAGTAATATTAATTCTATTGTATTATTCTCTTATCTTATATGTCTGGAAGCTTGAGCTATCTTGAATTTATCGAATAAAACAGAGAATAGGGTCAATGAGTTGTTTCAGAAGTGGTAACCACATAACAAAATAGCAGCAAACATGGGGTGAACTAGGCCAGATTTCAGTTTCAAATAACATCGTTTATTTTTAGGAATACTTGAGTTATTTGTTTATCTCCTTTTGGTTGATACTGAAATATGAAATGTTTCTGTTTTAGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGGTCCTATTATTAGCTGGAACTGATAGGTTGGACAGGTTTGTATTTATCTTTCTAGTGTAATGATGTTAACAATTTTCTCATTCATGATGATTGCCCTGTTGAACTCGGACCTCTATCATTATTAGCTCAATGTAATTTGTATTTAATTGATTACAAAATTTTATGCTTCCTGTTAGCTGCAATGGCATGCTATATATCCTTGGGTTTTCTACGGCCAAGCAGTAGTGCATTTTAAGGAGTTTTAATTAATCTGCCATTAGGCTAAACTGCACTAGTGATCAGGCTATCAAAATTTTGTGGCAACCTATTTGTACTGCGAAAAGCGAATTATATTATAAGTCTTTTGTTTCTGAGGAACATCTGGTTATGTTAAATCAATCAGCTGGTATGTGTTGAAGTTGATGCCTCAAGATATATGTTCCTATGAAACACAGACCATTGCTTTACTTCCTCAACCTATGTATAGGTCCTTCCAAAACAGAACTGCACATAGATTACACTTCACAATCTATCCCACCTGTACAGGTATGCTATCAGATCAGGAAATGAGAAATGACTCGAGCACACAAAATGCTACTTCTATTTAAGCTATTTGTCTTATGAAAACTATTCGATTAATGCATATATTTTTCTTATCACCCATTCTTAGTGCTTTGATTTGTGAAAATTGCATCATTTTTTAACACTTCTATGAACCATTATGGAGGACATATTGGTAATGCATTGGTTTGTCAATATGTTTTGCAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGTTAGCTCCTAGCCTCCTACAGTCCTACCGTAAGGCTTTCAACATTATTATTCTAATGATATCAAGGCACCCCCTTTCTAGCATTATTTCAATTTCTGCTTTTCTCCCTGCTCCTAGAGCCATCCTGCCTAGCAGCTCTAGGGTTTACTTTAAAAAAGTCACAAAAACCAATAATATGTAGAGGCAGCACATGAATTAACAACCAAAGGTTCATTTATCGAGTGTTGTTCATTATGTTATGTAAGTATGATTGCTAACAAGATCATCGAGCTGATGAATTATTTTGTAATGGATTGTTAACATACCATCGAAAATTTCCTTTCAGGAAGATGTGCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGTGTTGAGGTCAGTACTGCCTTAGCATTACACTTTTCAAATATTTACTCTTTTACCCATTTTTCAATGAACCTAATGCCTGTTACTTTTCTTCTCAGATTCCTGGACTGATTAAAAAATGGCAGCATTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA016470

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA016470&oldid=65364"