BGIOSGA017215

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Revision as of 04:41, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA017215| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA017215, complete gene.| tag = OsJ_163...")
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Gene Name

BGIOSGA017215

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA017215, complete gene.

LocusTag

OsJ_16344

Ensembl Transcript ID

BGIOSGA017215-TA

Ensembl Protein ID

BGIOSGA017215-PA

Length

5715

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:31445678..31451392

Sequence Coding Region

31445678..31445870,31446293..31446345,31446424..31447056,31447129..31447257,31447337..31447429
,31447505..31447621,31447697..31447797,31447866..31448154,31448645..31448856
,31448934..31449015,31449088..31449839,31449924..31450095,31450697..31450783
,31450863..31451180,31451267..31451392

Genome Context

<gbrowseImage1> name=IndicaChromosome04:31445678..31451392 source=RiceIndica04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome04:31445678..31451392 source=RiceIndica04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGGCGGCGGGGAGCACGAGGACTGCTTCGGAAGAGGGAGCGGCGGCGGCAATGGAGGCGGCGGGGAGCACGAGGACTGCTTCGGAAGAGGGAGCGGCGGCGGCAATGGAGGCGGCGGGGAGCACGAGGACTGCTTCGGAAGAGGACTCTGGGGCTTCGGCGCGGGTGACTGCCCTCACGAACGATCCAGATACTGATGAGCTCACTGTCAAGTGGTTACACGAAAACATGGAACCTCTAAGGGGAGGTGACCAAGCGCGGTATCGACTAAACCAGTTTGCAGATTTAAAAAAGACACTTTCAGATACTGCAACCAAGACGATAGACCGTCTTGGATTTGGTTCATTTCTTGGCATCAATATGGAAATGCTTCCTGATAAACAGTTTGCCATATGGACGGCTTCTTTGTGCAAGCCCGCAAAGGTCCAGAATAAAGATGTTGTTGTGCTTGATCTTGACCCCAAGCATCCTCTGGTGATATCACAAGAAGCTTTGCATATTTTAACTGGCCTTCCAATGGGTCAGGAAGATGTACCTGAGAATCTTCCTGCATCAACTACTACAGTGAAGGAGGCTCTTTCTGCTGCTTCTGGGAAGAGCAATAATTTTGTTTTAGCTGATGCTATAAAAGCATCTGAAAATGCTAGGGACAATAATGACCACATGCTGCAAGTGAAGCTTTTCATAGGGGTTGTATTCAACTTTGCCATCTTTACAACCACTTCATTATATTTTACAGCCGAAAGCATGACAGCTGTCTCTGAGATAAATAAGCTAGTGAAGACTAATTGGTGTGAAAAGTTAATTGCTCATATGAACAAATGTTTGAAAACCTTCCATTCAGGTCAGAAGGTTTCCAGCCCGGTGTCCTTTGTTCTTTTTTTCTTAGAAAACATAAACTTTACTGCAACAACTGAAGAAAATGACATAGAGACCCCGCGGTTGAATCACTATACGGAGGAAAAGGTGATTAGTATGATTGATGCAATTAAGAAAGGTGTCAAGCTTAAAGATTGGAAAGACACGGTGTTTGGCCAGCAGGAAATTCTAGAAGTTCAAGCTAACGACATTGAATATATTGAAAATTACAAGCAATCTGTAAAGAAGAGGAGAGGGAATGAGGATCAGGATCAGGGTCCTTGGAAGAAGATCTCTAAGGGTCATTTGAAGAAGACGACCTCTAAGGATCAGGGTCTTTTGAAGAAGGGGATCGCTACTAAGAAGAGGAAAGTGGAGGATCAGGGTCCTTTGAAGAAGACGATCAGATCGAATAAGGAGTCCAATGATGAGATAAACATTCGTGCTGATGTAGGCAGGGATGTTCTTCGTCAATACAAGGAGCATGTTCTCGACAGAACTCAAGACAAAATAAAAATTAATATATTGGACCATGAAGTTTCAGAACGTAATTATGTAGAATGTTTCAAGCAGCAAGGATACATGAACACTTCCATAATGTTCATACAATGTGCATTATGGAATCAAGAGTGGAAGGGTCAAGCCATGGACAAAGTTATATTGTCTCAAAAGGCAATGTATGAATTGTTAGACCCAGAGCATGGAACAAGTACATTAGCTGATGAGCTTGGACAGCAAGCTAATTTGATATTTATACCTGTTCTTCATGAGAAACACTGGTTCTTGATCGTGATCTCACGCAAGAAGGACACCATTTATATCCTCGATTCATTGCCTTGCAAGTCCAGAGAGGCAGTGATTTGTGGTATTCTAGAGACACTGCAGAAGTTGGGAAAAGAATCAATTGCTGGATCTCAATACATCTGTGAAGTACTAGACGTGCAGCGTCAAGGAAACAACTATGATTGCGGTTTTCATGTTCTACTGTATATCAAAGAATTCGATGATACACAGGCAGTGCAGATATGTGAAATTAACAAGGATATGGTGGAAAAAATCCGCATTGAAACTGCCGTAGACCTTGTCAACCACAAGCTTAACAAAAGAGATGAGGAAGAAAAAATATCATATGATGATGATGATGATGTTGAGCTCGTGGATGAAAAATTCTCATATAGCAATTTTGTTCTCAGTAGTTTTCTTCACAGGGATCGGGATGATGCGGGTTTGGATGATGCGGGTTTCGATGGTGGAGAAATTTTTGGTGGATCCTCGAGTCCGGTTGTTGATCCCAGTGAAAATCAACAAGAGAGGGCTGCCTCTAGAGAAGATTCCAAGGCTGACATGAATGAAAATCAACAAGAGAGGGCTGCCTCGAGTCCGGGGGCTGCCTCTAGAGAAAATTCCCAGGCTGGGGCTTCGGCTGTTTATTCCACACCCAAACTGGATGGCTCTGGGAATTCGGGTGTTGATCCCCTGCAGAAAAACACTGATAATCAAAACAAGAGGCCTGCCTCTGGAGAAGCTCCCAAGGCTGACATGAAGAGGACTGCCAAGCCTGATAAACTTTATTGTAGGAGGCAACCAAAGGAGAAAGCGGAGGAGGAGCCAGTTTCCTCAGCAGTGCAGGAGGAACCAAAGGAGAAACCGGAGGAGTTAGTTTCCTCAGCAGTGCAACCATCTTCTACCCAGAGGCCACGGAGAACTGCTGACCCTTTTGGCCATTATAAACCAACCCGCCAGTTGCTTAAGGGCGAAATACTTGAACTGGTTCATCAGCTGGCCATTGGTTGTAAGGAGCAGGTTATATTGGAGTTTGAAGAGATCTCGATGACTGGTTCTCGATTAGAACAGTCCCTCCAAGGAGGTGCGGATGCCAGGGATCTTATTATATTATTAATGAAAGTCCTGGATAAATATCCGTACAACCAACGTAAAAGAATCTTTCTCTCACCAGTAGAGAAGGATGGCCAAGATTTGGAGAAAATGATTGTGGATGCACTCCCGGTTCTGAGATCAGGTAGCAGGACCACCACGTTAAAGGAAACAACTATTTACTGCCCTGTTCTCTTCCAAGGAGAATGGATTGTTGCATGTTGTGTGTTTTCAAGCTCAAACCAGGTCCATGTTTTTTGCCACAAAGATACCTTGGCCAGCGTGAAACCATTTTGTATTGATCTGGGAGCCAAAGCAAACTCAGCTTTAAAAAGATGCGGATACAACCAAGTAAAATTTCCTGACCGCAAAGTGGCATATACTGGTACCAACATAAAGGTCAATGATAGTGCGTTTGCATCAATGTATTTCATCGAGAATTTCGGGACTTCTGGAGAAATACATTTCAACCGGTTTTTAGAGAAGAATGATGAGGTGAAGGATGAATTCATTAAAGATGTGAAGTTAGGGCTTTTGCCGTACTTATTGAACCACAAGAATAATACTGGAACTGTCCCTAATGAAATTTCTGAATTGATCAAGAAAAACAAAAGGACCTAA</cdnaseq>

Protein Sequence

<aaseq>MEAAGSTRTASEEGAAAAMEAAGSTRTASEEGAAAAMEAAGSTRTASEEDSGASARVTALTNDPDTDELTVKWLHENMEPLRGGDQARYRLNQFADLKKTLSDTATKTIDRLGFGSFLGINMEMLPDKQFAIWTASLCKPAKVQNKDVVVLDLDPKHPLVISQEALHILTGLPMGQEDVPENLPASTTTVKEALSAASGKSNNFVLADAIKASENARDNNDHMLQVKLFIGVVFNFAIFTTTSLYFTAESMTAVSEINKLVKTNWCEKLIAHMNKCLKTFHSGQKVSSPVSFVLFFLENINFTATTEENDIETPRLNHYTEEKVISMIDAIKKGVKLKDWKDTVFGQQEILEVQANDIEYIENYKQSVKKRRGNEDQDQGPWKKISKGHLKKTTSKDQGLLKKGIATKKRKVEDQGPLKKTIRSNKESNDEINIRADVGRDVLRQYKEHVLDRTQDKIKINILDHEVSERNYVECFKQQGYMNTSIMFIQCALWNQEWKGQAMDKVILSQKAMYELLDPEHGTSTLADELGQQANLIFIPVLHEKHWFLIVISRKKDTIYILDSLPCKSREAVICGILETLQKLGKESIAGSQYICEVLDVQRQGNNYDCGFHVLLYIKEFDDTQAVQICEINKDMVEKIRIETAVDLVNHKLNKRDEEEKISYDDDDDVELVDEKFSYSNFVLSSFLHRDRDDAGLDDAGFDGGEIFGGSSSPVVDPSENQQERAASREDSKADMNENQQERAASSPGAASRENSQAGASAVYSTPKLDGSGNSGVDPLQKNTDNQNKRPASGEAPKADMKRTAKPDKLYCRRQPKEKAEEEPVSSAVQEEPKEKPEELVSSAVQPSSTQRPRRTADPFGHYKPTRQLLKGEILELVHQLAIGCKEQVILEFEEISMTGSRLEQSLQGGADARDLIILLMKVLDKYPYNQRKRIFLSPVEKDGQDLEKMIVDALPVLRSGSRTTTLKETTIYCPVLFQGEWIVACCVFSSSNQVHVFCHKDTLASVKPFCIDLGAKANSALKRCGYNQVKFPDRKVAYTGTNIKVNDSAFASMYFIENFGTSGEIHFNRFLEKNDEVKDEFIKDVKLGLLPYLLNHKNNTGTVPNEISELIKKNKRT</aaseq>

Gene Sequence

<dnaseqindica>1..193#616..668#747..1379#1452..1580#1660..1752#1828..1944#2020..2120#2189..2477#2968..3179#3257..3338#3411..4162#4247..4418#5020..5106#5186..5503#5590..5715#ATGGAGGCGGCGGGGAGCACGAGGACTGCTTCGGAAGAGGGAGCGGCGGCGGCAATGGAGGCGGCGGGGAGCACGAGGACTGCTTCGGAAGAGGGAGCGGCGGCGGCAATGGAGGCGGCGGGGAGCACGAGGACTGCTTCGGAAGAGGACTCTGGGGCTTCGGCGCGGGTGACTGCCCTCACGAACGATCCAGGTATGCCCCCAAGCAATCTGCCTGCCTGCATAACTAACGATGGCGGGGGTTTCGTCTGGATGGACTTGAGATTAGTCTTGTGTTCCAGTTCCACAACATTCAATTATGAGACGCACTGGTAAAATGCTTAGATAAAGGAGATAGATGAATAGAGGGAGTAGACTTCTTTTGAAGAATTACCTTTTGCTTGTTTCTGTTGGCTTCCAATTTAGAATTCAATTGCTTAATAAATAATCAAATTCGTCAATAAACTGAACACCTGCCCCCTGCTTAATTCTTTCAAAACATAAGCTGAACAAAACGTCATCAGACATTAGTTATCAACATAGATGAAAACTGAAAAATAATAGAGAAATTTTGCTTTTTTATTATTAGGGATAGATTAGAGCTAATTTTCAAATCCTGACTTTATGATTTTACAGATACTGATGAGCTCACTGTCAAGTGGTTACACGAAAACATGGAACCTCTAAGGGTATTCATCTCTGCAACCTGTTAATCACCATTTAATTTATGAGAAGGGTTGACACGAGTATTGCTTGTTTGATTGAAGGGAGGTGACCAAGCGCGGTATCGACTAAACCAGTTTGCAGATTTAAAAAAGACACTTTCAGATACTGCAACCAAGACGATAGACCGTCTTGGATTTGGTTCATTTCTTGGCATCAATATGGAAATGCTTCCTGATAAACAGTTTGCCATATGGACGGCTTCTTTGTGCAAGCCCGCAAAGGTCCAGAATAAAGATGTTGTTGTGCTTGATCTTGACCCCAAGCATCCTCTGGTGATATCACAAGAAGCTTTGCATATTTTAACTGGCCTTCCAATGGGTCAGGAAGATGTACCTGAGAATCTTCCTGCATCAACTACTACAGTGAAGGAGGCTCTTTCTGCTGCTTCTGGGAAGAGCAATAATTTTGTTTTAGCTGATGCTATAAAAGCATCTGAAAATGCTAGGGACAATAATGACCACATGCTGCAAGTGAAGCTTTTCATAGGGGTTGTATTCAACTTTGCCATCTTTACAACCACTTCATTATATTTTACAGCCGAAAGCATGACAGCTGTCTCTGAGATAAATAAGCTAGTGAAGACTAATTGGTGTGAAAAGTTAATTGCTCATATGAACAAATGTTTGAAAACCTTCCATTCAGGTCAGAAGGTTTCCAGCCCGGTGTCCTTTGTTGTAAGTATCTTTGAAATATTTTCTTTTCTTTTCTTAGAACAGCAATGTTGTATGGCTAACAGTATGTGACAGCTTTTTTTCTTAGAAAACATAAACTTTACTGCAACAACTGAAGAAAATGACATAGAGACCCCGCGGTTGAATCACTATACGGAGGAAAAGGTGATTAGTATGATTGATGCAATTAAGAAAGGTGTCAAGGTATGTACAAATTATGCATATGCATTCACGTATTTCATAGACATCTAACAATAAAATTCCCTTCCGTGCCCTTTTTTAGCTTAAAGATTGGAAAGACACGGTGTTTGGCCAGCAGGAAATTCTAGAAGTTCAAGCTAACGACATTGAATATATTGAAAATTACAAGCAATCTGTAAGTATAAGTCTTGCCATATATGTACTTTCTGGATCAGTACATACATGTTACACATTCCATATCGTCTTTCAGGTAAAGAAGAGGAGAGGGAATGAGGATCAGGATCAGGGTCCTTGGAAGAAGATCTCTAAGGGTCATTTGAAGAAGACGACCTCTAAGGATCAGGGTCTTTTGAAGAAGGGGATCGCTGTAAGTATAAGTCTTGCCATATATGTACTTTTTGGATCAGTACATACATGTTATACATTCCATGTCACCTTTCAGACTAAGAAGAGGAAAGTGGAGGATCAGGGTCCTTTGAAGAAGACGATCAGATCGAATAAGGAGTCCAATGATGAGATAAACATTCGTGCTGATGTAGGCAGGTAAAGAAGAGGTGGTCTCTGCGGTTTTCTTACTGGATAGTCTTATTAACCTCTCTTAAACTCTTCAGGGATGTTCTTCGTCAATACAAGGAGCATGTTCTCGACAGAACTCAAGACAAAATAAAAATTAATATATTGGACCATGAAGTTTCAGAACGTAATTATGTAGAATGTTTCAAGCAGCAAGGATACATGAACACTTCCATAATGTTCATACAATGTGCATTATGGAATCAAGAGTGGAAGGGTCAAGCCATGGACAAAGTTATATTGTCTCAAAAGGCAATGTATGAATTGTTAGACCCAGAGCATGGAACAAGTACATTAGCTGATGAGCTTGGACAGCAAGCTAATTTGGTAGGTTATGGATTTTTCTTCTATAAATGAAGTGTAGTTTGTACCCTTGTATTCATGATCAATCCTTTACTTTTCTAGCTTATATATATTATTTGTGAGCTGTTAGCAAACTTGACCATGCCTATGTCAATCCTTTTATGTGCAGCCATGATTATTTTTGTGACAAGTTTGCAAGTATAGCTTGATTATGAAAGTAGGCTTCTTACCCCTCATAGATAGGACATGCTAAATATATTTGTCATGACTAGGGACTTAGCATTTTCAGTTTAGGGCTGATGTGCTAGATATATGTTGTCAAACTCCCTCCTTTCAGCAAAAGCAGCAACAACTTTAGAGGTTGCCCTAGCCTTTATGTATATTTTTAGTGCAAGATCATTGTCCACAGAACTGACAAGGTATGGTTAAGTCCACAAAGTCTGGTTAAAGCCATAGAGTCAGCAAGCTAATTTGGTATGTTCTGAGTTTTACAATGGGACATTTCCCCCTGCAGATATTTATACCTGTTCTTCATGAGAAACACTGGTTCTTGATCGTGATCTCACGCAAGAAGGACACCATTTATATCCTCGATTCATTGCCTTGCAAGTCCAGAGAGGCAGTGATTTGTGGTATTCTAGAGACACTGCAGAAGTTGGGAAAAGAATCAATTGCTGGATCTCAATACATCTGTGAAGTACTAGACGTGCAGCGTCAAGGAAACAAGTATGTCTCATTTACCAAAATATTCTTTGCTTCTTCTGCTGCTGCTGCTTCCTCACCTTAGTGGCTAATTTTTTCAGCTATGATTGCGGTTTTCATGTTCTACTGTATATCAAAGAATTCGATGATACACAGGCAGTGCAGATATGTGAAATTAACAAGGTAATTCAACAATTATACATTTATGTTCCTAATCCAAGATCCCATAGAATTAATTGTGAATTAAAATTGCAGGATATGGTGGAAAAAATCCGCATTGAAACTGCCGTAGACCTTGTCAACCACAAGCTTAACAAAAGAGATGAGGAAGAAAAAATATCATATGATGATGATGATGATGTTGAGCTCGTGGATGAAAAATTCTCATATAGCAATTTTGTTCTCAGTAGTTTTCTTCACAGGGATCGGGATGATGCGGGTTTGGATGATGCGGGTTTCGATGGTGGAGAAATTTTTGGTGGATCCTCGAGTCCGGTTGTTGATCCCAGTGAAAATCAACAAGAGAGGGCTGCCTCTAGAGAAGATTCCAAGGCTGACATGAATGAAAATCAACAAGAGAGGGCTGCCTCGAGTCCGGGGGCTGCCTCTAGAGAAAATTCCCAGGCTGGGGCTTCGGCTGTTTATTCCACACCCAAACTGGATGGCTCTGGGAATTCGGGTGTTGATCCCCTGCAGAAAAACACTGATAATCAAAACAAGAGGCCTGCCTCTGGAGAAGCTCCCAAGGCTGACATGAAGAGGACTGCCAAGCCTGATAAACTTTATTGTAGGAGGCAACCAAAGGAGAAAGCGGAGGAGGAGCCAGTTTCCTCAGCAGTGCAGGAGGAACCAAAGGAGAAACCGGAGGAGTTAGTTTCCTCAGCAGTGCAACCATCTTCTACCCAGAGGCCACGGAGAACTGCTGACCCTTTTGGCCATTATAAACCAACCCGCCAGTTGCTTAAGGGCGAAATACTTGAACTGGTTCATCAGCTGGCCATTGGTTGGTATGTTTCTGGAAGCCTTATGATTATATTCTTTTAGAGTAGAACTTGCTATACTGATATGTGTTATGTTTTCAATTTGAAAAGTAAGGAGCAGGTTATATTGGAGTTTGAAGAGATCTCGATGACTGGTTCTCGATTAGAACAGTCCCTCCAAGGAGGTGCGGATGCCAGGGATCTTATTATATTATTAATGAAAGTCCTGGATAAATATCCGTACAACCAACGTAAAAGAATCTTTCTCTCACCAGTAGAGAAGGTAAAAGGTTTCCCCATGTTTTTTTTAACAATTGTACTACAATTGTACTTAAGAATGGTTAAGGCATTAGGTCCGGTTAAGCCTAGACAGTACTGGTTAAGGCCATACAGTCCTGGTTGAGGCACACTTGGTTAAATCAGTGAACCAGGTTAGTAATCAAGTCCAGGCCACACAGTTTGGTTAAGGTTATACAGTCCAGGTTAGTAATCAAGTCCAGGCCAGATCTGTGACACTTCATACAAATACTTCACTATCTACTGAAGAGATATGCACTGTTGGGGAGCAGGGGCATTAGGCTGCTGTGGTGCCACTATTGCAGTACATCCCAAACTTTCATGAACTCTCCCTGGCATATATCATCAATTTATCAATCAGATTCAATTGTTGGATAAATAAGAGGCGCCACAATTTCTGAAATAAAAATCCTTTAGAGTGCCTCAAAGTTAGTAATCAAGTCTATACAGTTTGGTTAAGGTTATACAGTCCAGGTCCAGGTTAAGTCCATACAGTTGTGGTTGTCATTGTGTCTGGTTAAGGCCAGGCAGTCCTGGTTAAGGCAGTGTACCTGGTTCAGATAACTTATGTTCCCCCCTATGTGCAGGATGGCCAAGATTTGGAGAAAATGATTGTGGATGCACTCCCGGTTCTGAGATCAGGTAGCAGGACCACCACGTTAAAGGAAACAACTGTAAGTTGTGCATCAATACTGTTTTTTTTGGAATTGTTAATTCCCCAAAACCAAGTTACACAATTGTTTGTTTTTACAGATTTACTGCCCTGTTCTCTTCCAAGGAGAATGGATTGTTGCATGTTGTGTGTTTTCAAGCTCAAACCAGGTCCATGTTTTTTGCCACAAAGATACCTTGGCCAGCGTGAAACCATTTTGTATTGATCTGGGAGCCAAAGCAAACTCAGCTTTAAAAAGATGCGGATACAACCAAGTAAAATTTCCTGACCGCAAAGTGGCATATACTGGTACCAACATAAAGGTCAATGATAGTGCGTTTGCATCAATGTATTTCATCGAGAATTTCGGGACTTCTGGAGAAATACATTTCAACCGGTTTTTAGAGAAGAATGATGAGGTATGTTGAAAGAACTAACCTTATAATTTTGTTATGGAGTTCTGAAAGAACTAACATCATTTCTCTCTTTTTTTTATGACTTGCAGGTGAAGGATGAATTCATTAAAGATGTGAAGTTAGGGCTTTTGCCGTACTTATTGAACCACAAGAATAATACTGGAACTGTCCCTAATGAAATTTCTGAATTGATCAAGAAAAACAAAAGGACCTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA017215

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