Os08g0126300

From RiceWiki
Revision as of 12:45, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0126300| Description = Similar to Glyceraldehyde-3-phosphate dehydrogenase (Fragment)| Version = NM_001067432.1 GI:115474600 GeneID:4344564|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0126300

Description

Similar to Glyceraldehyde-3-phosphate dehydrogenase (Fragment)

Version

NM_001067432.1 GI:115474600 GeneID:4344564

Length

3782 bp

Definition

Oryza sativa Japonica Group Os08g0126300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:1524413..1528194

Sequence Coding Region

1524488..1524491,1524625..1524648,1524764..1524864,1525152..1525267,1525360..1525459
,1526060..1526206,1526290..1526350,1526433..1526530,1526955..1527097
,1527327..1527410,1527538..1527627,1527722..1527767

Expression

GEO Profiles:Os08g0126300

Genome Context

<gbrowseImage1> name=NC_008401:1524413..1528194 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:1524413..1528194 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcaagattaagatcggaatcaacggtttcggaaggatcgggaggctcgtggccagggtggccctccagagcgaggatgtcgagctcgtcgccgtcaacgaccccttcatcaccaccgactacatgacctacatgttcaagtacgataccgtgcacggccaatggaagcacagcgacatcaagatcaaggactccaagactctgctcttgggcgagaagccggtcaccgttttcggcatcaggaaccctgacgagattccgtgggctgaggctggtgctgagtatgtcgtggagtccaccggtgtcttcactgacaaggagaaggctgctgctcacttgaagggtggtgccaagaaggttgtcatctctgccccgagcaaagatgctccgatgtttgtctgcggtgtcaacgaggacaagtacacttcagatattgatattgtctcaaatgctagctgcaccacaaactgccttgctcctcttgccaaggtcattcatgacaactttggtattatcgagggtctgatgacaactgttcatgccatcactgccacccaaaagaccgttgatggaccgtccagcaaggactggaggggtggcagggcggccagttttaacatcattcccagcagcactggtgctgccaaagctgttggcaaggttcttcctgatttgaatggcaagcttacgggaatgtccttccgtgttcccactgtcgatgtctcagttgttgatctcacagttagaatcgagaaggctgcctcatatgatgctatcaagagtgctatcaagtctgcatcagagggaaagctcaagggaatcataggatatgttgaggaagacctggtttctactgactttgttggtgacagcaggtcgagcatcttcgacgccaaggctggaattgctcttaacgataactttgtcaagcttgtcgcctggtacgacaacgagtggggttacagcaaccgtgtcatcgacctgatccgccacatggccaagacccagtag</cdnaseq>

Protein Sequence

<aaseq>MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMT YMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNPDEIPWAEAGAEYVVESTG VFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCTTNCLA PLAKVIHDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKA VGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEKAASYDAIKSAIKSASEGKLKGII GYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA KTQ</aaseq>

Gene Sequence

<dnaseqindica>76..79#213..236#352..452#740..855#948..1047#1648..1794#1878..1938#2021..2118#2543..2685#2915..2998#3126..3215#3310..3355#tatccggcttccagacgcttctctcctcctctaatctcaagtctctgtctcgtcgtcctcgcatctccactcgccatgggtaattatgctcacctccgaatcgaattaattcccccgtttgattactgctggtgcttcgcgtcctgatctgattgatgtttttttttctgatttttttggtgaattttctggtggtgtttttggggacgcaggcaagattaagatcggaatcaacggtgagtttgctatctgaattactacgagtttgtgctgtgctgggtgtggtttcgttggatttgtggtgatttgagtgggggttttttgtgtgtttgggattgtgattttgttcaggtttcggaaggatcgggaggctcgtggccagggtggccctccagagcgaggatgtcgagctcgtcgccgtcaacgaccccttcatcaccaccgactacatggtacgctcttcgatctgtgggtttcaccgtcttcatgtgcagatctagtcgtttgtagggttctacagtggttttagctcagatatacatttgcgtgctcgctcaaagagatgtttagtggttgggagttgttttgattgagatatggcagttaattttcccagatctgagtactttttttcgcatgtttagttgctgaattatgctgtttgctactgcatatggctttgattttcgtgtggtgtgctcacgattgatgaattctatgttggtcgtgtgatttgcagacctacatgttcaagtacgataccgtgcacggccaatggaagcacagcgacatcaagatcaaggactccaagactctgctcttgggcgagaagccggtcaccgttttcggcatcaggtaacttgatattgatattacagcttagatgaaagtaacttgtttatggtagcgagcgtggaactgatgtttgatcctgtgcaatttgaaaggaaccctgacgagattccgtgggctgaggctggtgctgagtatgtcgtggagtccaccggtgtcttcactgacaaggagaaggctgctgctcacttgaaggtattatcactgttgcttttcattccaacaaattggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttatttttaagaattaatggatgtagttagattacaaaatcttacacgattttgctaatgatggacacctttgtgtaaaagcatcattatctaactaaaagaaactaagcaatccatggtttttgattatgcataactaaatgtaggcagagatgtgccacaaggggaaagctcattaaaatttgaagtttatgaaccccagtgatatatgtcaaggtctttgcatttacccaaaaagatttggcctgcaaagttaagagtgactacctaagtcttctaaagttaggatgatgcatcacaaagcagacagctcctaattcttttgccttaatttcttaagtattagcatatataacttatggctttgtgttgtcaatttagttttttttattacttgatgccttgtttatttttactctgaaaagtacttgttgtgcatctcccttgttgcataagttagctatttcggtgcattttttatgcttacatggctgttctgaaaacagggtggtgccaagaaggttgtcatctctgccccgagcaaagatgctccgatgtttgtctgcggtgtcaacgaggacaagtacacttcagatattgatattgtctcaaatgctagctgcaccacaaactgccttgctcctcttgccaaggtatttttctttccgagtgacaattttctactttcagttggacttttggtttggttcttaattgactcgttatcatccaataggtcattcatgacaactttggtattatcgagggtctgatgacaactgttcatgccatcactggtaagactttcttggctttttggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgtacttgttttcagccacccaaaagaccgttgatggaccgtccagcaaggactggaggggtggcagggcggccagttttaacatcattcccagcagcactggtgctgccaaagtacgtcatgaacttcaatgttgtgcatgcacaaccacagttcaaaatcctctttatagttccaataattttgtattctcctgtgttatggggctgcgtatagttttctttttgactttatttgggaatgttaagtagaagacccagtgataatagcaagtaactgcacaaatggcgcgcttgctgatttcagccctagagtttttgttgataaatgagcatgtgcgctgtctttattcaagtatgaattctctctcatgtcctatgacgaattgcttgctgttcatgcttctgttcagagttgtttctggcctgcttagggaaaagggggtgcatgtgggcggtagtttttggttgtgaaagcatgttttgttagtaaaatgggactgcagccttaatgacttctaacatcaatgcattgcaggctgttggcaaggttcttcctgatttgaatggcaagcttacgggaatgtccttccgtgttcccactgtcgatgtctcagttgttgatctcacagttagaatcgagaaggctgcctcatatgatgctatcaagagtgctatcaagtaagtatatagcttccaacgcaaggggaatgtacatctcattttgcgcactgttgctagaactgcatcttgtggcaggggataccgctcagtgatgtatgttactgaaacatacatgtgaaggattcctagaaaagtgtagttacgtgtgttggtgggcgcagaactgcacaagttatccttaagttagtagtgtgtccctgacgagaatatgctaattgttttacaggtctgcatcagagggaaagctcaagggaatcataggatatgttgaggaagacctggtttctactgactttgttggtgacagcaggtatgcctttttgtcttgagaggccctgtaagaaatctgtaatgcagatctgctccaaactaagtggttacggacgaactatctcctgtatgctatcattcattctctgtactcatctttgactcaggtcgagcatcttcgacgccaaggctggaattgctcttaacgataactttgtcaagcttgtcgcctggtacgacaacgagtggggttacaggtgagccacttgcagttcaaactattaaccatgtacaatactccatgcccaatttgctcttactgatctttcttttttgaactattttctgcagcaaccgtgtcatcgacctgatccgccacatggccaagacccagtagaatccttttgcttgccatggtattccatggccgccgagccggagataccggtatgctttgtctatgctgagaataaaacgtggacggtgttcatcaggacccaccccctctgttaatgctagttgggataatgagttgcattttgttttccaatctacctacttgtaagttgtaacgatgctgatgatatggacctgagtctacttttttgcttgtgaagaatataagccgtccagtgcagttgtaattttgttatgctggttgcatatatgggctttgtgtttggttcgtgctacctcttcacttctgcttgtttgtttggtcgtgtagggcaacgtctcatgatcagcttagtttgctctttcgtagttgctctcaatgtttattactccagaataacgtggcctttgcgattcagttgtgttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0126300, RefSeq:Os08g0126300