Os08g0156700

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Revision as of 12:47, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0156700| Description = Similar to VAP27| Version = NM_001067560.1 GI:115474856 GeneID:4344695| Length = 4779 bp| Definition = Oryza sativa...")
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Gene Name

Os08g0156700

Description

Similar to VAP27

Version

NM_001067560.1 GI:115474856 GeneID:4344695

Length

4779 bp

Definition

Oryza sativa Japonica Group Os08g0156700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:3284099..3288877

Sequence Coding Region

3284352..3284459,3286638..3286715,3286883..3286924,3287012..3287176,3287358..3287473
,3287565..3287646,3288465..3288535,3288665..3288734

Expression

GEO Profiles:Os08g0156700

Genome Context

<gbrowseImage1> name=NC_008401:3284099..3288877 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:3284099..3288877 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcttcccccggaccggccaccgccggcgagctcctccgcatcgaccccgtcgaactccgcttccccttcgagttgaagaagcagatctcgtgctcgatgcagctatcgaatctcagcgacgactacatcgccttcaaggtgaaaactacaagcccaaagaagtattcggtgcggcctaacacaggggttgtcttgccacggtctacctgcgatgttgttgtgacaatgcaagcacagcgggaagccccgcctgacatgcagtgcaaagataagttcctagtccagagcgtcattgcaccttccggtgtaactgtgaaggatatcacgggagaaatgtttacgaaggagtccggaaataaggttgaagaggtaaaattgcgagtgacctatattgctcctccacagccaccatctcctgttcccgaggaatcagaagaaggttccccatcaagggtttctgagtcagaaaatggagacagtcttggtgggggtttcactagagcactgagagaacgcattgagcctcaagaaaattcattagaggctggagctttgattaacaaattgaatgaagagaagaactctgcaattcaacagaaccataaaattagacaggaactggatatgatgagacgggagataagcaagaagcgcggagggttctccttcataatcgtcataattgtcgccttgatcgggatcttcttgggctatatgatgaagtcataa</cdnaseq>

Protein Sequence

<aaseq>MASPGPATAGELLRIDPVELRFPFELKKQISCSMQLSNLSDDYI AFKVKTTSPKKYSVRPNTGVVLPRSTCDVVVTMQAQREAPPDMQCKDKFLVQSVIAPS GVTVKDITGEMFTKESGNKVEEVKLRVTYIAPPQPPSPVPEESEEGSPSRVSESENGD SLGGGFTRALRERIEPQENSLEAGALINKLNEEKNSAIQQNHKIRQELDMMRREISKK RGGFSFIIVIIVALIGIFLGYMMKS</aaseq>

Gene Sequence

<dnaseqindica>4419..4526#2163..2240#1954..1995#1702..1866#1405..1520#1232..1313#343..413#144..213#attcctcattttcccttttcttccttccttcccctctttggcttctctcctggcctctcctctcctctcctctcgtcgttgcacccacctcctctcccaagatctcacctttccaccccctccgcccccgcctcgatccggcaatggcttcccccggaccggccaccgccggcgagctcctccgcatcgaccccgtcgaactccgcttcccctgtacgggcttccccccccccccccccaatcttttccgttcaagaaaggatgtttttttgtgttctttcttttgttttgccggattggatcgattggttggtgatttcgtttcgtgtttgtggtgggcagtcgagttgaagaagcagatctcgtgctcgatgcagctatcgaatctcagcgacgactacatcgccttcaaggtcccgcatcgctcttttctcagaaatctttgggggattcttttttttttcccctaatgataattatcttggaaccctagagctgcagtaatactagattaatcgaacgccctgttggtatggttggtgtgttatgttgttgatttggaggaggcgttcctttaagtttgtatttttggatgaatggcttcattggatttgacccccataatgattgaaaagtgttggtcttttaggttgttgtgtgataggggcctacagtttttaatgttctatatgtattttggagattgaaatttgttgctgctggctgcttgcattgaataaacacttgaaagttgatttaagtttttatttgttttgcatctcatttggtctgttcttcaagcttcgtgccataaaatatacaattgaaggcttacctgctgtacaagttccccttttctaatattttgcttgtgtaaactctagaattgaagttttgaaccttggagggattatattattattattcgcaaatggtatcaactgttacctcctattcgtatgttggttttatagattattaaatcagcgtatacataaaacctttcttgtgtcttgtggggctaatatatgtctcttgattgcattttataatgggatttcttcgttttccttgccttgataagtctgtgatgaaaccttctagtgtttatctactaaggtcattggaattgtttaaactattttaatgaagtgacaatcttgtagcaaacattgattcaatgaggctttgttttgtttgttcatatttcctgttttcttctctgtttcaggtgaaaactacaagcccaaagaagtattcggtgcggcctaacacaggggttgtcttgccacggtctacctgcgatgttgttggtatgtgatttctgcaaattttccctggtgatttttatgcagtcaaccaatgctccgttttatgacttttttgtgcatctgtactgtgcagtgacaatgcaagcacagcgggaagccccgcctgacatgcagtgcaaagataagttcctagtccagagcgtcattgcaccttccggtgtaactgtgaaggatatcacgggagaaatggtaatgcttctcaattatgcttcttaataaccaaataagagcatatataggggggtgggtgggtcgttttggagttctaaaactctgttgtctctgtagtatagtggcaacccctatgaagtgaaaattttgcttataagtccggtgtttgattagtagtctcatgtttgtggtttgacagtttacgaaggagtccggaaataaggttgaagaggtaaaattgcgagtgacctatattgctcctccacagccaccatctcctgttcccgaggaatcagaagaaggttccccatcaagggtttctgagtcagaaaatggagacagtcttggtgggggtttcactagagtgagttaccatgactgttgaacttatgccatccatttatcatttttcgcaaagaggagaatttacatgtttttgaaatcattgcaggcactgagagaacgcattgagcctcaagaaaattcattagaggtctgttatttctctaattaagactggaccgtgtccattttgcaaattttgatattgtctcaattacattctggtagcatcgacttatcgaataattgtcataattacactatggtctggtgccttgcgctataaaataccttatgttctgagtatttgtatggcaggctggagctttgattaacaaattgaatgaagagaagaactctgcaattcaacagaaccataaaattagacaggaactggtgagtacactattgcattttaactttcgagtggactctattttggcttccggattatatgtttaaaaataggtattacatatttggatctaacacaaaccactaccactaggtgctccctccattcttttttatatggcattggttagttcaaaatacaccatatagaaaaagaaggaaggggatatacttacttttgggacatccaactaatacatgaaaagattagaaaaataatctacaggaaaccaaagtaaactaccatcatataaaatttttttgctgttgcagaaattcacccccccccaaagtttcgttgtaacctattcagtttaaaattgtatccttattcatcttgatttgaggttgaactaacgtagttattataacaaacttacaacttggcaacatcattaaggctgtgttcgctggaatgagttgggaacccatctcctgcgcacggaaaatggagcggtccattaacacgtgattaattaagtattagttttttttttcaaaaatggatcaatatgatttttttaagcaactttcgtatagaaactttttacaaaaaacacaccgtttagcaatttgggaagcgtgcgtgcagaaaacgaggcggagggagttgggaactacgacttacgaacagaggccgagtttagttccaaactttttcttcaaactttcaacttttccatcccatcaaaacttacctacacacacaaacttctaacttttccgtcacatcgttccaatttcaaccaaacttccaattttggcgtgaactaaacacacccagagcctaaaaggttgaagcctcacaaagcacactacatatgttggcaacatcattaaaaagttgaagcctcacaaagcacaccacatatgctttcaggcttcagcgttaagaaacatatgtagcattatgattcaaatagatggctacaaaatatcttcaccgtgaacaaaatgaaacaaaaatcaaaatgtgctcaagtactgcagtacatcatatgggcacagaccttaagttctgacaggttagctgtggcaatctgcccatctctgagacagactgacaaggcctattcaacacaaaaccttttaaactcggctttcctatgtatattgcagggcttttaccatctgctaacatgagatcatctttgaaaagatgcaaaacaaatagttttacactcattgagcaatctagataacagtttttatcctgttttacttttgctacctcagctctatacaagttatcctgactagcattcaagtcctccaatatatactgttctcagatcactactctcttcaattgatgtattttcaatatcatagcagtattcaattaaacaaatttcttggacaatctcaatttgtaactcaattgatgtgtttggattctttctctatctttgagtaatcaactggtttcccatttcaaccttaatacagatttcatatttggtattttgattgaaataattattgtatgaaaaacttacactgaaccacccctagaacaacttgtccgagttgcacacttctggagcctcaagaatgtctcactagttcttctcataagtcatatcttgctctcaatgtataaaatccattctatatgactttatgtcatgaactgctgagacccttcttggaaaagcttaagtgagctaaatgaaacatacatatgaacatacatacctaagaaagatagagatgtaagagtttcgaccttccaaggctcttctgaataaaacgacattctgatcccatggtttgtattctctctgttgcagaacaagtcttttagcttcagctaaggaacattccattgaactagttgtctattaataatttcttggatgccttcatgctaattggaacatttgttttaagaaaatcaccatggtaacttaagagatggtggtttggatgaagctaattgacaaactgatgataatataccaagtctccttaaaactcgcataagctcctgcgctgatgctgtatatcctcacctgtctcaaagaacacttgatgtgttattctagatttaggcttataaataatttccgaactgtgtaaaagaacaatccgtatagttaacttttatgtttttatcgagaaattatgattcactgttgccatttctccatatcgcaggatatgatgagacgggagataagcaagaagcgcggagggttctccttcataatcgtcataattgtcgccttgatcgggatcttcttgggctatatgatgaagtcataattctttgagtcgacatcgaagggaactggaccccacattcatgccaagttattcttgggaggcaaagagaccgtcatgaagttctcctttctgttttgtcaatataggagtgttgcgtacgtgggaaaatcttcaaccagattaagcttgttttcttttgcagtttgttgtttgttgtattgggtgagttgtgcacttctgacactgtaacttggaaatgcattaatcgcttctgttgacagtttatcttgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0156700, RefSeq:Os08g0156700