Os08g0170900

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Revision as of 12:48, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0170900| Description = Cullin family protein| Version = NM_001067629.1 GI:115474994 GeneID:4344771| Length = 3833 bp| Definition = Oryza s...")
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Gene Name

Os08g0170900

Description

Cullin family protein

Version

NM_001067629.1 GI:115474994 GeneID:4344771

Length

3833 bp

Definition

Oryza sativa Japonica Group Os08g0170900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:4152419..4156251

Sequence Coding Region

4152517..4154554,4155882..4156039

Expression

GEO Profiles:Os08g0170900

Genome Context

<gbrowseImage1> name=NC_008401:4152419..4156251 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:4152419..4156251 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagttccaggaagaagccgtcgaggatcgagccgttcaggcacaaggtggagacggacccgaggttcttcgagaaggcgtggaggaagctcgacgacgccatccgcgagatctacaaccacaacgccagcggcctctccttcgaggagctctacaggactgcttataatctggtacttcacaaacatgggccaaagctctatgacaaactgacagaaaacatggaagatcacctgcaagaaatgcgcgtatcgattgaggctgctcaaggtggtttgttcttggtagaactacagaggaaatgggatgaccataacaaggctttgcaaatgatcagagatatcctgatgtacatggacagggtttttattcccaccaataaaaagacacctgtatttgatcttggattggatctttggagagatactattgttcggtcacccaagatccatggaaggttgcttgacactcttcttgatctcatacatagagagagaacaggtgaggtgataaacagatccttgatgaggagtacaactaaaatgttgatggatctaggttcttctgtttatcaggatgattttgaaaggccattccttgaggtgtctgctagtttttatagtggtgagtcacaaaaattcatagagtgttgttcctgtggtgaatatcttaagaaggctcagcagcggcttgatgaagaagcggaacgtgtttcacagtacatggatgccaaaacagacgagaaaataactgctgttgtggtgaaggaaatgcttgcgaatcacatgcagaggttgattcttatggagaactcaggtcttgttaatatgcttgtggaggacaagtatgaagacctgaccatgatgtacagcttgtttcaacgtgttcccgatggtcactcgacaattaaatctgtgatgaattcacatgttaaagaaaccgggaaggatatggtaatggatcctgagaggctgaaggaccctgttgattttgtccagaggcttctaaatgagaaggataagtatgacagtattgttaccacttcctttagcaatgacaagagtttccaaaatgctctgaattcctcctttgagcacttcattaacttaaacaatagatgccctgagttcatctcgctgtatgttgacgacaaactgcgtaaaggaatgaaagaggccaatgaggaggatgttgagactgtcctggacaaagtgatgatgctgtttaggtacttgcaagaaaaagatttgtttgagaaatactacaagcaacacttggcgaagcgccttctttctgggaaggctgcttctgatgattctgagagaagtatgcttgtgaagctcaagacagaatgtggatatcagttcacttcaaaattggagggcatgttcaatgatttgaagacctctcatgataccacacagcgattttacgctggtactcctgatttgggggatgcccctactatatctgtccagatactcaccactgggtcttggcccacacaaccatgtaacacctgcaaccttcctcctgagattcttggcgtgtccgagatgtttcggggtttctaccttggtacccacaatggcaggagactgacatggcaaacaaacatgggtactgcagacatcaaagcagtgtttggaaatggcagcaagcacgagctaaacgtgtcgacctaccagatgtgtgttctcatgttgttcaactcggcggactgtttgtcttaccgtgatatcgagcagactacagcgataccatccgcggacctgaagcgctgccttcagtctctcgcgcttgtgaagggcaagaacgttctgcgcaaggaacctatgagcagggacatctccgacgatgacaacttctacgtcaacgataagttcaccagcaagctgttcaaggtgaagatcggcacggtggcgacacagaaggagtctgagccagagaagatggagacccggcagagagtcgaggaggacaggaagcctcagatcgaggcggccatcgtgaggatcatgaagtcgaggagagtgctggatcacaacagcatagtgacagaggtgacgaagcagctgcagcctcgtttcatgccgaaccctgtggtgatcaagaagagagtcgagtctctgattgagcgcgagttcttggagagggacaagacagacaggaaactgtaccggtatcttgcataa</cdnaseq>

Protein Sequence

<aaseq>MSSRKKPSRIEPFRHKVETDPRFFEKAWRKLDDAIREIYNHNAS GLSFEELYRTAYNLVLHKHGPKLYDKLTENMEDHLQEMRVSIEAAQGGLFLVELQRKW DDHNKALQMIRDILMYMDRVFIPTNKKTPVFDLGLDLWRDTIVRSPKIHGRLLDTLLD LIHRERTGEVINRSLMRSTTKMLMDLGSSVYQDDFERPFLEVSASFYSGESQKFIECC SCGEYLKKAQQRLDEEAERVSQYMDAKTDEKITAVVVKEMLANHMQRLILMENSGLVN MLVEDKYEDLTMMYSLFQRVPDGHSTIKSVMNSHVKETGKDMVMDPERLKDPVDFVQR LLNEKDKYDSIVTTSFSNDKSFQNALNSSFEHFINLNNRCPEFISLYVDDKLRKGMKE ANEEDVETVLDKVMMLFRYLQEKDLFEKYYKQHLAKRLLSGKAASDDSERSMLVKLKT ECGYQFTSKLEGMFNDLKTSHDTTQRFYAGTPDLGDAPTISVQILTTGSWPTQPCNTC NLPPEILGVSEMFRGFYLGTHNGRRLTWQTNMGTADIKAVFGNGSKHELNVSTYQMCV LMLFNSADCLSYRDIEQTTAIPSADLKRCLQSLALVKGKNVLRKEPMSRDISDDDNFY VNDKFTSKLFKVKIGTVATQKESEPEKMETRQRVEEDRKPQIEAAIVRIMKSRRVLDH NSIVTEVTKQLQPRFMPNPVVIKKRVESLIEREFLERDKTDRKLYRYLA</aaseq>

Gene Sequence

<dnaseqindica>1698..3735#213..370#atcttctcatcttcgcttaaaaacacaaacaaaacgaatttcacaaaaatcctcgagaaacatctcctcctcccccttctctctctcttcctcctccccccacatctcccgcgagatacgaaaccctagcgctcgcggcctgaatccgcagcagcaggcggggggcctcgccggatcaccgccgggcggcgggcggcgggcggcggcgggagatgagttccaggaagaagccgtcgaggatcgagccgttcaggcacaaggtggagacggacccgaggttcttcgagaaggcgtggaggaagctcgacgacgccatccgcgagatctacaaccacaacgccagcggcctctccttcgaggagctctacaggtttcccatccccccatcccccatcccatcgcgcttctccctgtcagtgctgtacaggggcagaaagaaagataagaggcctgatttgatttgatttgatttagttttgcggttacaacaatgcggagatggcgatatgtgatgcgagtatttggacatagttcattaaaaaaggaattagaaattttgtttgttagggttgtatattgcagatggagtttaggacagctcctagattcatgatctgttatgtgggatttgaacctcactataataattgatgctcgcttgtcggttatcgctgtagacgtaacgccccattatgattggtagggagctttgtcagccagatggaaatcgtatgcagttaactgcttaatttgtagagcattaaatacttttaacttggtttagaagtttgggagattgcgtatgtcggttcattgatgggtctcttggttcgttatgcttttgctccataaatttaagtgcaatggattcttaagtcatgttgtagtgctgttgcattttctggctccttttttggtggccatgctatcaagcaatttggatgttgcaaaccacatgtaagaggtgtttgagaaagtggaaaatactccgttttattagaaggaaaataccattgattctacaaaatttaatttgtgaagaaattcatcacttgagagtttgcgtgcctattacctctagggaaattcatctcagatcaattctcatcacttgagagtttgcgtgctctatgctatgcatttgtttgcgcataaaaaaaaactcttatccccttgaaacaagattagctgaacagtgtctcaaaatacttatgaaagtctttcttctttacatcattgttttttcagtggaaaattgttattttccttacataagaactctatttctacaatcacaaagcatggtcttttactattcatgtagtctgtaggtagtgcttctatcatactgaaactggattactgcagtacccataacttgttcaatggaactttgtagttgttgttatgtcccttgcatcattgtatactcttaaaaaagtgcaataaatagaattttaagagagaaacaaaggccaactgccctgtttgcttgcccttaagcgatgtgttattgtgatatctgatttttctttttctttttggttctggaaataccttcgatattattattggcttttcatggtatcatgtctgagctaccagcctttcatggcacagtatactattattatttgtttggaaccaataagccttcttacgtaccagaacataatattgtccttatattctggcaggactgcttataatctggtacttcacaaacatgggccaaagctctatgacaaactgacagaaaacatggaagatcacctgcaagaaatgcgcgtatcgattgaggctgctcaaggtggtttgttcttggtagaactacagaggaaatgggatgaccataacaaggctttgcaaatgatcagagatatcctgatgtacatggacagggtttttattcccaccaataaaaagacacctgtatttgatcttggattggatctttggagagatactattgttcggtcacccaagatccatggaaggttgcttgacactcttcttgatctcatacatagagagagaacaggtgaggtgataaacagatccttgatgaggagtacaactaaaatgttgatggatctaggttcttctgtttatcaggatgattttgaaaggccattccttgaggtgtctgctagtttttatagtggtgagtcacaaaaattcatagagtgttgttcctgtggtgaatatcttaagaaggctcagcagcggcttgatgaagaagcggaacgtgtttcacagtacatggatgccaaaacagacgagaaaataactgctgttgtggtgaaggaaatgcttgcgaatcacatgcagaggttgattcttatggagaactcaggtcttgttaatatgcttgtggaggacaagtatgaagacctgaccatgatgtacagcttgtttcaacgtgttcccgatggtcactcgacaattaaatctgtgatgaattcacatgttaaagaaaccgggaaggatatggtaatggatcctgagaggctgaaggaccctgttgattttgtccagaggcttctaaatgagaaggataagtatgacagtattgttaccacttcctttagcaatgacaagagtttccaaaatgctctgaattcctcctttgagcacttcattaacttaaacaatagatgccctgagttcatctcgctgtatgttgacgacaaactgcgtaaaggaatgaaagaggccaatgaggaggatgttgagactgtcctggacaaagtgatgatgctgtttaggtacttgcaagaaaaagatttgtttgagaaatactacaagcaacacttggcgaagcgccttctttctgggaaggctgcttctgatgattctgagagaagtatgcttgtgaagctcaagacagaatgtggatatcagttcacttcaaaattggagggcatgttcaatgatttgaagacctctcatgataccacacagcgattttacgctggtactcctgatttgggggatgcccctactatatctgtccagatactcaccactgggtcttggcccacacaaccatgtaacacctgcaaccttcctcctgagattcttggcgtgtccgagatgtttcggggtttctaccttggtacccacaatggcaggagactgacatggcaaacaaacatgggtactgcagacatcaaagcagtgtttggaaatggcagcaagcacgagctaaacgtgtcgacctaccagatgtgtgttctcatgttgttcaactcggcggactgtttgtcttaccgtgatatcgagcagactacagcgataccatccgcggacctgaagcgctgccttcagtctctcgcgcttgtgaagggcaagaacgttctgcgcaaggaacctatgagcagggacatctccgacgatgacaacttctacgtcaacgataagttcaccagcaagctgttcaaggtgaagatcggcacggtggcgacacagaaggagtctgagccagagaagatggagacccggcagagagtcgaggaggacaggaagcctcagatcgaggcggccatcgtgaggatcatgaagtcgaggagagtgctggatcacaacagcatagtgacagaggtgacgaagcagctgcagcctcgtttcatgccgaaccctgtggtgatcaagaagagagtcgagtctctgattgagcgcgagttcttggagagggacaagacagacaggaaactgtaccggtatcttgcataattactcttttttttttcttctggattctttaacctgaccataagtaaaccgtggtctatgtatacctgttatatcacgataatgcttttggttggatt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0170900, RefSeq:Os08g0170900