Os08g0172200

From RiceWiki
Revision as of 12:48, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0172200| Description = UvrB/UvrC protein domain containing protein| Version = NM_001067635.1 GI:115475006 GeneID:4344777| Length = 5565 bp|...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0172200

Description

UvrB/UvrC protein domain containing protein

Version

NM_001067635.1 GI:115475006 GeneID:4344777

Length

5565 bp

Definition

Oryza sativa Japonica Group Os08g0172200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:4236023..4241587

Sequence Coding Region

4238279..4238602,4238834..4238893,4238967..4239058,4239152..4239230,4239306..4239399
,4239643..4239755,4240158..4240203,4240711..4240751,4240839..4240994

Expression

GEO Profiles:Os08g0172200

Genome Context

<gbrowseImage1> name=NC_008401:4236023..4241587 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:4236023..4241587 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggctgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcgtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataaggtacacggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtccttgttgatgtatatgctgatccagaactccttgttgcatatgttgcagaagaaaatcttgcagaggctgaaataccagagaaaggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctga</cdnaseq>

Protein Sequence

<aaseq>MQGIFACGSISSAHGSCFRPACLAVDDLRLFYKINSVTCGAYSW RWCVKKLHMRTNRRQMGTTVRTNARWLFGGDGRSSSNARMERSESANEDILIFYFQLD LQTRIQYALNIEQFDVAKQLREKLTEIETVIIRQREAKRGSSKTEAQDKAINLLRVRA DLQKAVDSENYALAAALRDEIAKLETESLAVSAKALAYQNVKYAFRLGQKVRHKVHGY RAVICGMDHVCCESKSWMETANVENLSKGPNQPFYQVLVDVYADPELLVAYVAEENLA EAEIPEKGRFDHPYIEFLFFGEDTAGDFIPIKQLREKYDQPRYEASGDEDDDDGSTDS </aaseq>

Gene Sequence

<dnaseqindica>2257..2580#2812..2871#2945..3036#3130..3208#3284..3377#3621..3733#4136..4181#4689..4729#4817..4972#gagtggccgtccgccgctccgcgcctccgctctgctacctgcgcctgcgcgtcgtgctccctgcgtccatccctcgccacgccttgccgcaccaacagcgctccctgcacctccgcctccctccccaatccgtcccatctcctcgcccgccgccctcgcctgccatcctgccagcagaggtggcgccgccgttctcctgctcccgctgcattcgctcaccggtgagcatcctaatccatcccatccggcctcggcctcgtcctcgaatttcgtctcctcgcccggcgtcctcctgcatccaccgcatcatcgctcgccggtgagcatccctcccttcccacacctcatcaggtgttctgcccagttccacctactttcaacttgttaattttgatttttgtttttagcggatgtaatttggttactgaatctcatccaaacacccttagaatagttgcattagaacgaaaaatgtaagctcacatcatttgtactcatccaaactcacataatttgtaatatttattaagtatcaataagtaaaacggatgatttaccatgtgacaaattaattattaaaataaattgtattcatccgttgtaatgcacggatatttttaaatgatttactagctgctgccattaggtaatctttcacatttttttacttactatgaaatccaaatctctgattcttttctttttacaattaatgtttggttcaaaacttgcccactaggtaatctttcacatttttttacttctgaatctctgaatttttttttaccattaatgtttggttcaaaacttgtgggctaaactgaagagaggtgtgctgagtggagggaggtagcgaactagattaggactaaaaaggaatgaaagaatggactttaggcccaaaactaaggaaaagaactaaggaaaattttcattaacttttttaattaaactgtatagtgatcctaatgtttcaattcattacttgattcctaattacggtggtatcactatgaaacatttttatctgttgcaatgcacggatattttttttgggaaatttaactatttgccacttttgggatatggcaattaatgatttgccactcgctgtctatgacatgtgggctctcatttgtctatgacatgtgggcctagtggcaaattgttaagcaccactcgtaagagtggcaaatagttaaaagtcccatttttttttccttagttgtaactaaatccttcacctgaagggaacgggaggagaaggcgaggttagagaatcctagacgttcgttggttcttggacggtctagtttcaccccaactgcttaacctgcagtcgatgcaacgactgcacctgatccaggcgttacacattctatccggtatcgcgtcgacgaccgccacacttgagccagtggtagttatggccgagaagagcgtggccccttcctccttcctcctttgcctctcgtcgacgcttcccggactcctccttccaccgaagcgcgcgccacgctcgctacatggccggcgtagcgcggagtcccattaggacttgagagtgatttcttctttctgaaatgatttggattggtttcgtttcttcggcgtagcccggagtcccattaggacttgagtgatttcttctttctgaaatgacttggattggtttcgtttcttccgttggtgatgaactgtggctcctttgattggtttcgtagctttttctagcattttatctgttgcgggcaaaaccccttacctctcccgtataacccattagtttttgagttttttttttgcgtgataatagagagcactgatagatattactcgaaacgaaacgcactggtgtgtactagcactttattatttccaaagagtttgatggtttctttgcctacttgcctggatcacgttaggtgcgatttacctttaataattcaaaatagattgatcagtatctacgaacaaaaaaagaagatagtaaaatgtttattgcacatttacgatatggtaggattccaagcactgcttgttagtttgttagttaatagtagtttgtaatcatttagatgccacaattcaaagcctttctcagttacccagtgcattttgtactagttttaagcaaaatgttcttgatctctgcgcagttggggatcccactgacttgctgattgcaactgtcagtgtggtgattggactgcatcagttgtgggaattgaactggtcaagtctcagactaatacaatgcaaggcatttttgcatgtggttcaatttcctcggcccatggatcatgctttagaccagcttgtcttgcagtggatgatctgaggctgttttacaaaataaattcagtaacctgtggagcgtactcgtggcgttggtgtgtgaaaaaactacatatgaggaccaatagaaggcaaatgggtactacggtgagaactaatgctagatggctatttggaggagatggccgtagcagtagtaatgcaaggatggaacgcagtgagtctgctaacgaagacatcttaatcttctacttccaattggacctacaaacccggatacaggtgagttgttgcttccttaccatcattttctaaagcgaataaagttaccaatccagccggcagctattcttttttcacggatcaattccctagactagtagcaatcggctaactaaatctactatcatgatcattgcatcattcttagttgctagtcactggttcatgcaactgtttgatacttacctatgcacgtccagcctaactattgaatttcttggttcttactagtatgcattgaatatagagcaatttgatgtggcaaaacaattgagggaaaaactcacagaggtaccaaatgacttcacttgaagataaatgaattcattgtatgagacttgctaaagaaaatatcctcctctagattgaaacagtgataattaggcaacgtgaagctaaaagaggctcatcaaagactgaagctcaggacaaagctataaaccttttacgcgtgcggtatgttaatagtttccatttctccatgacgttctagtgttatgtagcattggttcatttgagaggtcacttagctttatccatttgtttcagtgcggatttgcaaaaggccgttgacagtgaaaactatgctttggcagctgcactgcgtgatgaaattgctaaacttgaggtacagcaaaactgtagtgcaccggccatgtgatggtaatgtgtaaataacatattaacttcaaacatcatgtagacagagtctctggcagtctccgctaaggcccttgcatatcaaaatgtgaaatatgcatttcgactagggcagaaagtacgccataaggtacacggtgagtactactgctatactacccacttcgtattattgtttacacattatttctgaagctatccagaaaatggataactactacaaatttcttttcaaactttatataagaagttaatttttcataattgtcattatccttaaatgtaacatttgcatgtgttaaagcacactttgtatcaaatattaaacttcagtgaacatgctttagtttatcttcttaattttacatcacctgctgaaggatatagagctgtgatttgtggcatggatcatgtgtgctgtgaatccaagtcatggatggagacagcaaatgtggaaaacttgtccaaaggaccgaatcaacctttttatcaagtaaatgctgcttgacttattccaatttaagtagttcctcaatgcccatagttcatagaaatatcatttccttcatgtagcatcagttgtgacttgtttatcatggatggcgattatgtgtaataatacctacctgttcttgttcttaatttgcaaactcacttgtggaattgagatggtgatattcatcattgcctttttctcctcccttttggatttgttcggtataatcaggacgttcatgatgcaattttattagcctgcgattgactgtttctctatgcaactaatgcttacttttggatgatattgcccatgcatactgatgtgtttgcatagtttagtcttttgagaattgagatgcttagtgatcctctgtgattcattgccgaaatcttgcaggtccttgttgatgtatatgctgatccagaactccttgttgcatatggtattgatttttcttttccactgtttacacttagtttatgaggcagttgactttgagctatattttcacataaaacatttatttccatatgctaactcagatttattacgactttatctttagttatgctgttattaaagaagcctcatcaggctattgttcagaaaaatcaccagagacagctcactatatttttactcgacctgaaaaatataaactagcaggttctctactcagtttataaattacctttgctcagtgaaaatgaacaactatgtgctgattctcatgtcaaaataattccactattttgatagacatgaccactggtggaaattctatcttgagatctgtaacttttaatgagcaatcttgttttgtgtaaaatggcagaagaaggcaagatagtaggctaattcagtagtcaaatgatcaaatccatcttcacttactgttttatgtctatgatgtgccattttgagacatgttatgtctgtataatttcagttgcagaagaaaatcttgcagaggctgaaataccagagaaagtgagtttgagttcttcatttgcttggtggttttcatttttggtcaaattgaactaatgctgtccgcctgtccccctttatttacagggaagatttgatcacccctatattgaatttctgttttttggcgaggacactgctggggacttcattcctatcaagcagcttcgtgagaagtatgatcagccacgttatgaagcttctggggatgaagatgacgatgatggcagcacggatagctgaaaggtgagtttttcacttataatgaggcgttcgtgtaattggcaagtggaccacaaaattaatattatctgtccctgcgtgatacattcaggtaggcagcaagagttgttttgatgccatttccgatgccttaccaccgactgagttccgaaatggtggaggagcttgacagcttgttactatctgatgtaactacagcgggctaatgtcagtgaagactggtgactgggctaacctggaacctgaacaatccacagcaatctgcaatgaggcaatctgcatttgatatattgatatctgaccttgcagattcacgattgaggataacacccatatagtggccaatccatgaagccctttacatatacggttctaaagaagatccttgtggatttgcagtctgtacttccccaagttcttctgtaactgtgttccctctgatgggaattttgtagataagctgcattcatcaaacctgcaactctgcagctgcagagaaagcaaagggttgacgtacatctattggaaagttggaatatacttacgtggaaaactgcaaaccacagaatttttgacgctcggggaaaataacc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0172200, RefSeq:Os08g0172200