Os08g0197500

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Revision as of 12:50, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0197500| Description = Cyclin-like F-box domain containing protein| Version = NM_001067728.1 GI:115475192 GeneID:4344881| Length = 4933 bp|...")
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Gene Name

Os08g0197500

Description

Cyclin-like F-box domain containing protein

Version

NM_001067728.1 GI:115475192 GeneID:4344881

Length

4933 bp

Definition

Oryza sativa Japonica Group Os08g0197500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:5637272..5642204

Sequence Coding Region

5639020..5640168,5641077..5641232,5641310..5641499,5641835..5641971

Expression

GEO Profiles:Os08g0197500

Genome Context

<gbrowseImage1> name=NC_008401:5637272..5642204 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:5637272..5642204 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcgccgggggaaagccgctctctggcggccgcgccatggcgagggcgagacgtcccggcgtggaggcgacggcgatggagaagcggccgaccgcctcagcgccctcccggacggggtgctgcaccacgtgatgtcgttcctcaaggcgtgggaggtggtgcgcacctgcgtgctctcccggcggtggcgcaacctctgggcgtccgcgccctgcgtcgacctccgcatccggtacttccgcctcgacagcgagccgccggaggagccgcgcgatttcgtgaaccgcctcttccgccgccgggaggcgtcggcgccggtggacacgctccgcctgcagttgagcgacccggacaatttgtttgacaacgacgatgccaatgcgtggatccggactgccatcaagcgcaatgctcgattcattcatctcactgggcaccgcaaagagatcggggtgttaaagcacagggccttggtctctacccacctcaagatcttgaagctgtcctatgtcctgatcgatgacaagatcctcaagcagctttcttcagggtgcaaatctttggaagaactggatcttaaggactgcgtgatgaccggccatcagatctcctctgcttctttgaagactttgaagatggataggtgcaagatcaatgtggacctctctatcactgctccaaaccttgtttttctgaacatagtcacaccttacatccgagttccatcgttcaagaacttggagtcgctggtgacatgctctatcatacttgatgaccttttcttgggtgatgattatcagcacattagtgatgaagatgacattgatgaaaccactgatgatgatgattttggttatcagaagaatgataaggcagggtataggattaattacgctaaaaaaggatttgtgtttggtggaaacgaggatggttatggctatggtagtgatattgagagtgatgacaacacctatgaatatagtgagattgcaaatgagtgtggtgagcttcagtatggtaacaatggtgatggtcataattccagtaaagatggcgaatatgacaatgctgaaacatttggtggccaaaatgtgattcacagcctttcaaatgttagaagtttggaactcttagctggtgctggagaggtggttctttctagggaattgaaaagctgcccaatttttatcaacttgaagaccctgtcccttggtgaatggtgtatggatgctgaattcgatgcattagttttcttgctacagcgttcacctaatttggagaggctttttcttgaacctcagttgaacttcaatactaggaaggcattggaaagtggtgttaaacctacgggaagatcatttacttgtaaagacctgcaaatggtgaagatcagatgctcgaaggacgatgcgagagtccatatgctggcacatttgttcagggctaatggcataccctttgataagatttatgtccatcggtctgggagctctcgtctccgcagcgagaaggtgatgagagatctagccaagcaagaactggagttctgggggtcagatgagttctggggttcagattatgagtactgtggtccagatccggagttcggggattcggatttggaattctga</cdnaseq>

Protein Sequence

<aaseq>MRRGKAALWRPRHGEGETSRRGGDGDGEAADRLSALPDGVLHHV MSFLKAWEVVRTCVLSRRWRNLWASAPCVDLRIRYFRLDSEPPEEPRDFVNRLFRRRE ASAPVDTLRLQLSDPDNLFDNDDANAWIRTAIKRNARFIHLTGHRKEIGVLKHRALVS THLKILKLSYVLIDDKILKQLSSGCKSLEELDLKDCVMTGHQISSASLKTLKMDRCKI NVDLSITAPNLVFLNIVTPYIRVPSFKNLESLVTCSIILDDLFLGDDYQHISDEDDID ETTDDDDFGYQKNDKAGYRINYAKKGFVFGGNEDGYGYGSDIESDDNTYEYSEIANEC GELQYGNNGDGHNSSKDGEYDNAETFGGQNVIHSLSNVRSLELLAGAGEVVLSRELKS CPIFINLKTLSLGEWCMDAEFDALVFLLQRSPNLERLFLEPQLNFNTRKALESGVKPT GRSFTCKDLQMVKIRCSKDDARVHMLAHLFRANGIPFDKIYVHRSGSSRLRSEKVMRD LAKQELEFWGSDEFWGSDYEYCGPDPEFGDSDLEF</aaseq>

Gene Sequence

<dnaseqindica>1749..2897#3806..3961#4039..4228#4564..4700#ggagtttttccccctttcttctcactccaactgatgagtggacgaagcagacgactctctccctcatcggagacctcatctgctcgcgggagtcggatctgttgtgctggagtcgaagagctcgccagcggtcaaatccatggtgcggattcaggggcagcgtgagcaagccaggctagctccctggtaggcccccgtccctctcgcctcactctctcttcctccgtcctagcctaaattgggcgcaagtgatgcggattgagtgcagccgcacccaacgggcctttcacctcatttgaagaaaacatagcgatttttatcttggttggatcagttcctatttatttttgattccgtgagattatatttgattacgcatcttctatgacttgatttcttttaatcttattcttggattcgatttcagttaccataaacatgtttctaggtccgatttatttacaagataggattattttgagggaatttgggttgcatctgtttgtttttgtgttcatgctttcaagtgacttttgaggtgagacggcattgagacacgtgcggagcatttgagacaggtgtgaagggcaacaacgtgccaacgtgagggaagcggaggctcacaccgtgacggaggaaagcggactatcacggacgaaggcgtaatgtgaagatcagaaacatatgaattttttaattagttaagactagaaaaaaatacccgtgcattgcaacgggtgaaggttattttattcttattatattatacggtttagttaagatgaaattcactttgggaattcgctttaatatataactttttagaaaatcgtgaactacaattaagagtccgatcgtctcaagttagcgtgcgagttttttttataagagatttcttatacgactccttttgtattttcaaaagcgaacgaacttaaaaaccgactcatacacagatgacgtaccaaagtactagcaaaaaatatttttaatttttataatagtagagattagataaagatatttgtaaatttctactctacgggcctatttggttctctaccctacctatttattggtagtgccaaaatctaggcaaattttggcactgccaattttttggtagggaaaagttaattagactacttttggtttaataccaatatggagccaaattttaatagtatggtgaagaatattctagaatatgtccaaattgagtatgggcactatcaattgtttggcttcaaaccaaactagcatatttactatttaaattaccaaaattttggtagggcacagttttggcttcaatccaaaacggtcctacattcggtctcaaaactgacataagtggcgacgtctgggcgtaatttgaatggaaatttgaactaatatggcccatatacttacatggatgggccagaatttcagcccaacccaaacgagacgttgctggcctccgttcagcatggagtagttgccgcctccttatgctcggtttgttgtttaaactttaaatttgaattctgcggaaaccaagaacaccatttcagccatcttcttccttcgagagacgtaagctcgaataattcatcttcctcttttgatttcaccttcacatgcaagttgtttcctcaaagatttcctcgcaattatttgtcttgataggttgaaatcgaagaatggaggttggaggttactgagacctagttcgacgaggaggtgaaggcaacctgttcgacggaatgcgccgggggaaagccgctctctggcggccgcgccatggcgagggcgagacgtcccggcgtggaggcgacggcgatggagaagcggccgaccgcctcagcgccctcccggacggggtgctgcaccacgtgatgtcgttcctcaaggcgtgggaggtggtgcgcacctgcgtgctctcccggcggtggcgcaacctctgggcgtccgcgccctgcgtcgacctccgcatccggtacttccgcctcgacagcgagccgccggaggagccgcgcgatttcgtgaaccgcctcttccgccgccgggaggcgtcggcgccggtggacacgctccgcctgcagttgagcgacccggacaatttgtttgacaacgacgatgccaatgcgtggatccggactgccatcaagcgcaatgctcgattcattcatctcactgggcaccgcaaagagatcggggtgttaaagcacagggccttggtctctacccacctcaagatcttgaagctgtcctatgtcctgatcgatgacaagatcctcaagcagctttcttcagggtgcaaatctttggaagaactggatcttaaggactgcgtgatgaccggccatcagatctcctctgcttctttgaagactttgaagatggataggtgcaagatcaatgtggacctctctatcactgctccaaaccttgtttttctgaacatagtcacaccttacatccgagttccatcgttcaagaacttggagtcgctggtgacatgctctatcatacttgatgaccttttcttgggtgatgattatcagcacattagtgatgaagatgacattgatgaaaccactgatgatgatgattttggttatcagaagaatgataaggcagggtataggattaattacgctaaaaaaggatttgtgtttggtggaaacgaggatggttatggctatggtagtgatattgagagtgatgacaacacctatgaatatagtgagattgcaaatgagtgtggtgagcttcagtatggtaacaatggtgatggtcataattccagtaaagatggcgaatatgacaatgctgaaacatttggtggccaaaatgtgattcacagcctttcaaatgttagaagtttggaactcttagctggtgctggagaggtatagtcttttcattatgttgtatatgtattttgttttcttcaatatccagcccttttgaacataatgatatttttctgactttttccaaagaaaccttttccctttcaccagatatctggttatccagtgagaacatgtgatacatttttttgctgcagtatcaattgattaaacctacttacttactcatagcattctatgattttccatcatccgttgtgaggcatttgattggcaactaaatctcttgagattgcagctttgagagagcaatgctcttagtcgttcaaaaaaagagagagcaatcctcttagttttggtgtgattgcttgttactttttgttgtcgtgatagtgtatcttttgacatcagttaagattcccacagacaatttcgatctgtgtatttttgttcaaggaaatacactttatgatatactccctccgtcccataaaaattgcatttgtagctccaaggctttgtcccacaaaaattgtatttctagtcatatggggcccaaccaattgattcatctatataagttttcttccatcccacgtaatttgggctgctaatgcttgcaattttattaagtatgctaattatatgggttaattctctcaaacttccttttaatcatttgtatatatggaatgtgtgtatgcagtgggttcattaaataaggttattgtggtcatttttcaatcatactattttgtcctaaattagctagaaatacaatttttatgggacggaggtagtagatgttaatccactgtcaatatatcaccatattattgttttcattcttgatgcacattgaatatcatttgtatgcacgatgtgaggttgattcaatcattatagttcactgatgaaaaagcacttttgtgtccaatatgaaggtggttctttctagggaattgaaaagctgcccaatttttatcaacttgaagaccctgtcccttggtgaatggtgtatggatgctgaattcgatgcattagttttcttgctacagcgttcacctaatttggagaggctttttcttgaacctcagttggtacgtctcctctgacttatatgtagagttccgagtatgcgtgcatgttttaatagatttcattgttctgcaaaaagaacttcaatactaggaaggcattggaaagtggtgttaaacctacgggaagatcatttacttgtaaagacctgcaaatggtgaagatcagatgctcgaaggacgatgcgagagtccatatgctggcacatttgttcagggctaatggcataccctttgataagatttatgtccatcggtctgggagctctcgtaagtcagactgtctcttcttggcattttgtatttatttgcattatcagtattaaattacccatctatttgctgtttaattgaagcatgcaacgttaaatctctatcctgctttctgaaatatggttaaattatcatgtctttcctgtttatacatatgaccgtgttcctcaaaaagctaaatatggttaaatggacattctgcgctcctgatagctattctgttatcaggcttttctgttaaacaatcaaaaggctattctgttagcttgaagttttgattttctgtgtgatcttcacatgtgttcttatctgctttctgatattgctaccaggtctccgcagcgagaaggtgatgagagatctagccaagcaagaactggagttctgggggtcagatgagttctggggttcagattatgagtactgtggtccagatccggagttcggggattcggatttggaattctgatgcaacgtcagatcatctatcgttcatcatatcttctatcgtatttagttcttatgttcggattgcaatcgtcttctatatgtacttagaaagaatctgacggcacgacgcattaagcacgcatagcagggccgtgacagatcggttattcctctttggggtaatattgaatgaactatgtatggctatccaaatactgaaatgctcttatccagtggaatgagttaacattc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0197500, RefSeq:Os08g0197500