Os09g0416700

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Revision as of 07:25, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0416700| Description = Vesicle transport v-SNARE family protein| Version = NM_001069715.1 GI:115479172 GeneID:4347065| Length = 4601 bp| D...")
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Gene Name

Os09g0416700

Description

Vesicle transport v-SNARE family protein

Version

NM_001069715.1 GI:115479172 GeneID:4347065

Length

4601 bp

Definition

Oryza sativa Japonica Group Os09g0416700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:15575394..15579994

Sequence Coding Region

15575646..15575759,15575848..15575961,15578211..15578372,15578621..15578848,15579781..15579816

Expression

GEO Profiles:Os09g0416700

Genome Context

<gbrowseImage1> name=NC_008402:15575394..15579994 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:15575394..15579994 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaggcgtcttcttgggacgcccttcgcaagcaggcaaggaggttggaagctcagttagatgatcaaatgattgcataccgtaaattggtgtctatgaaatcagatggttcagagaatgatatcgagtctgatatagaaagatcactgaagcagcttcagcaagtaaattctcaaatgcaaacttgggtatcatcaggaggctctgaagttctttctcacacattgacccgtcatatggagattttgcaagatcttactcaggaattctatcggcttcgatcaagcctcagagtgaagcaacaacatgcttcgctccttgacctaagagattttgacagagcaaagtttgatgttgagagtggagactcagccgatcaagctcttcttagagaacaagctgcaatcagtaggagttctggacagatggataatgtgatatcacatgctcaagcaacgctaggaactctcatgtcacaacgatcaacatttggtggcatcactacaaagataagcaatgttagtagccggcttcctacgatcaatcatatcctcgcgtcaattagaagaaagaagtcgatggacacaatcattctttcacttgtcgcgtctgtctgcgcctttcttattctcgtctactggttgtcaaagtag</cdnaseq>

Protein Sequence

<aaseq>MEASSWDALRKQARRLEAQLDDQMIAYRKLVSMKSDGSENDIES DIERSLKQLQQVNSQMQTWVSSGGSEVLSHTLTRHMEILQDLTQEFYRLRSSLRVKQQ HASLLDLRDFDRAKFDVESGDSADQALLREQAAISRSSGQMDNVISHAQATLGTLMSQ RSTFGGITTKISNVSSRLPTINHILASIRRKKSMDTIILSLVASVCAFLILVYWLSK</aaseq>

Gene Sequence

<dnaseqindica>4236..4349#4034..4147#1623..1784#1147..1374#179..214#gcaaccaaccaccctcaacctctcctctctgctccgctccgctccgtcctcccgttgattcgctcgccgcgccgcgccccgcccgcgcgctgagatccgaacggccgcccttcccccccgccgagatcgatctccacccccccacgaccgctaagacggcgccgacgaggcgggagccatggaggcgtcttcttgggacgcccttcgcaagcaggtgatgacccccatatcccgcgctccctttctttcttctccccgacggactcctgagatccggccctgtcctccgccaccgcccgcgtgacggaagcgacgatgggtttatgtgggggatcctgtgaattgattgggaggaggcgtctcctgtgaatgagattggggcaattgtctgcgccgttggtgggtggtggagtccgtagcctgcccgctcttggagaaaacagcgtatcttcttgcgttttcgttgttgtaacaagatattgtttgccattggataggtggtagactggtagtaaagaagatgtgccttcggacatccatagctccatgaacggtttaccattccattttctattgaaagggtgaacttggagcaatgtgacatactgacatggacccactagctagatcttcatgatcctaccaaactgtccccaaaagggacagtttcagatggaattctgtaccttcagcatatttcttagcaatgcagttgtcgagaacagagcgaatggacctatcacaattgttttcaaactttatgttctttgttactactgtctgattgtctctatactgatccttgaattggtctgggctttgagccttagtctaaccatctttcatggatcgagcttgtttagctgttcttccagaccatcagagtgtacgactattacatattttgttttcgtattgtctgacaaagtggttccaagttgtctatgccaatgtcgtcattaccctagtacatcctattgctgcaatcggaaaatatacctttaatggtttcttggtaattctttgagtaggttaattcataatttaagcagaaaatccaggtctcattttttttgcaataccctagtgcctgcaccagttttgaatggctgtgataccttgtttgtattcaattgactctttcaggcaaggaggttggaagctcagttagatgatcaaatgattgcataccgtaaattggtgtctatgaaatcagatggttcagagaatgatatcgagtctgatatagaaagatcactgaagcagcttcagcaagtaaattctcaaatgcaaacttgggtatcatcaggaggctctgaagttctttctcacacattgacccgtcatatggagattttgcaagatcttactcaggttcagaacaccttacactaactgtctataatgtgcataactgtagttagtttaacacttttctggaaagaaggcaagtgaattttgtaatatattaatagagaaggtgatagtataactatcatttttaatcaagctgaatcataatcttatgttgtcctaatgtgtcgtaaaacatatttctctgaactacatgtaagacagctattcattagtcataattttaagtttgcctaaatgcaatgcaggaattctatcggcttcgatcaagcctcagagtgaagcaacaacatgcttcgctccttgacctaagagattttgacagagcaaagtttgatgttgagagtggagactcagccgatcaagctcttcttagagaacaagctgcaatcagtaggagttctggacaggtaggacagtcctccatccttgttttttggaacctttgaatttcttatatgatatttgcatcacttgtttttgttaattttagaaaaaaaaaatcgtgcatcaataaatgtaattaggatgcagcttaactgaacaggtggagttacacttttttatggagtagtgctatattccctccgtccacaaatataagggagtttaggttgttagcaaagtttaaagttgagtttaaattactttgatgcccttgggactttacttgattaggaaagatcacgagtagcaatgcagtgattggatggattgggaaagtagtgctccaaaatcccttatattcgtggacaaatggaaaagccccaaatcccttatattcatgggtggaggggagtaggagggtttttacatctcatcagttgaatctaatcagttggtggttatgaaaaagcaagatgcactcacaacatgcagcatcggattttgtaagaagtttgtaaggattttttttgtacgtgtaccattttcctttgttacgaacataaactctaaagcagtttaaagttttaaactcaagttgctttgcctgcatttcgggtgctaagtattttcaggtcaaagaaaggaaatgtaattcctgcactaagtgtttttttgggaaatctatgtactaagtgtttttggtcttaaagataccgaaaagttgattacttgcactgggtgctatactgtcgtggaaaatattactacacaatgaagggtagttaaactactgtgtgtaagatttgtgcctcgtgcttgaaaatttcttcgcctttgaaatcctcatattggatttaatattcttgacaacagctagcatttagtatatttagcgattgtttggctaccaggataactgacagctagcatttagtatatttagtgattgtttggctatcaggatgcactgaatgtgggagttttcctgtgaggctgtgactcgggtggatggctaggattaaacatacgctttgttgggtgggaaatctttttcctaatccattatccaaacaggcccgtgttgactatctaccttttcagttacatgtctctgtccttaattttatctagaaaatcattgaacttttccaaattgtgtaaccaacaaattaattcgagaagactttatagtacaaaaccacaaatggctgctaaaccataaaaagtaaaaaaccagaattgtgcataatgattgttgccctgtatgcaaattatactgatagtctgtaatactctcaatgcatagctggccaagggcccttgtagtcttgtactttctgattttactagcataatgtcatcagaaattagtactaagaaattagatgttatattagtgaaacatggaatttaattgagaaaatttcgtctcttgaaacctccgcttatactactgagaaaatcccctatgtacccatgaaagttcacctaatcccttctatacccctgaattttgctcaatcccttacatacccctgaattttagtttggatcccttccataccctttccgctagttgaccgttagttgaccgttaaattcttttgaaaaagtccattttgccctttgctatgaagaaatataataaattaatgaagtacattgttggaatgtaaaatttattggaggagactattatatttatgagtttgtgatgcaccatattatttgtgacaaatttacttttacatatgatataaaaagttaatacttatttattagttattaaaagttcttttatgtagcatatgtgttttcatagtaatacaacagatttgtttattactatcagaacacatattctaaaaaaatgttttaataactaataaataagtattaattttttatgtcatatctaaaagtatatttatcgcaaataatatggtgcataactatctcataaacataatagtctcatataacaaatttctatgctccaacaatatactctattaatttatatgcttctttataccaaagggcaaaatggactttttcataagaatttaacggtcaactaacggaaagggcatgaaagggatccaaactaaaattcaagggtatgtaagggattgagcaaaattcagggtacagaagggattaggtgaactttcaggggtacacaggggattttctcactactattttagattgatcatactgccctccaccctcatttctatgcctgaacaataaattggaatgatgtcagatggataatgtgatatcacatgctcaagcaacgctaggaactctcatgtcacaacgatcaacatttggtggcatcactacaaagataagcaatgttagtagccggcttcctacggtatgtatctgcatatcatatgcccaagctactcaagtctattttctcttgtgatatacaactcaacttttttgactaaatctgacagatcaatcatatcctcgcgtcaattagaagaaagaagtcgatggacacaatcattctttcacttgtcgcgtctgtctgcgcctttcttattctcgtctactggttgtcaaagtaggggctgtcaacttgtcatagcaaaggcattagggtgttgtaagtttggatcacactgtcagtgcagataatcgagattggtgtttgtacaatattgattcaatgttatcctgttttgatggttcttcaggcattgtgcctctcactgcacagccgcatgacttctagtatcgactggacccatatactacatgtacttgtacatgaatacgtgtgatttcctgaatgaagattagtttggcatttctccctg</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0416700, RefSeq:Os09g0416700