Os08g0220400

From RiceWiki
Revision as of 12:51, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0220400| Description = Virulence factor, pectin lyase fold family protein| Version = NM_001067802.1 GI:115475340 GeneID:4344960| Length = 2...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0220400

Description

Virulence factor, pectin lyase fold family protein

Version

NM_001067802.1 GI:115475340 GeneID:4344960

Length

2598 bp

Definition

Oryza sativa Japonica Group Os08g0220400, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:7324162..7326759

Sequence Coding Region

7324477..7325195,7326225..7326690

Expression

GEO Profiles:Os08g0220400

Genome Context

<gbrowseImage1> name=NC_008401:7324162..7326759 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:7324162..7326759 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagcagtactacaaagcagcgctgcttcgctactgggtagtagtcccgttcctcctgtggctggtagccacggaggagcaactcgccgccggcgccgtggccggggcagctgccgagtcgtcgtcgacttggggcggccagggccagctgcagctgcctctctgggtgcgacccggagaccggcgcctcctggggatgtctgtggccggcatggcggtggatgccgtcgtggcggccgacggcaccggccagtacactaccatcaagcaagccgtgaaggcagcagaggcggacacgagcgggcgccggtacacaatccatgtgaaagctggcaagtacgtcgaagacgttgagatatggaggcctaatattaccatgataggcgacgggatcgggcgtaccataatcagcggcatgaagagcaaaaacaagaatcgggggacggcctgtacgggcacactgaacgtgcaaaaggacgggttcatcgcgcgagagcttacggtggagaacaccgcggggccgcaggcaatgcaggcggcggcggtggtggtgaagtcggatcgcgccgtcttcttcaggtgcgagataacgggttaccaggacacgctgctggcagatgtttacaggcagttctacagggaatgtgttatctccgggacaattgatttcgtgtggggcgaggcgacggccgtcttccagatgtgccacctcctggtgcgtcgcccgttggagggctcccacaacaccatcaccgcgcaagggcgcaaccactccgagcccgtcgtcgcacgctcgggtttcgtatttcaggagtgcaacgtgtcgaccaaggaggacctgaggggcgtggacacctacctgggccgcccctggcacccggactcccgcgtcatcttcatgtcgtcctacttggacggcaacgtggtcaatcccaagggatgggtggcgtggcgcatcaacaacgccaccgacgagcgctccaccgccagcaccgtctactacgcggagtacaacaacactggggctggggccaacgtcacccagcgtgttaactggcatggtttccaccttcttgcaccacacgaggtacgcaatttcaccgttgacagcttcatcgacggtggcagttggctgccagagaccaacgtcccgtaccatctcgatctcgatctcggtctgtaa</cdnaseq>

Protein Sequence

<aaseq>MKQYYKAALLRYWVVVPFLLWLVATEEQLAAGAVAGAAAESSST WGGQGQLQLPLWVRPGDRRLLGMSVAGMAVDAVVAADGTGQYTTIKQAVKAAEADTSG RRYTIHVKAGKYVEDVEIWRPNITMIGDGIGRTIISGMKSKNKNRGTACTGTLNVQKD GFIARELTVENTAGPQAMQAAAVVVKSDRAVFFRCEITGYQDTLLADVYRQFYRECVI SGTIDFVWGEATAVFQMCHLLVRRPLEGSHNTITAQGRNHSEPVVARSGFVFQECNVS TKEDLRGVDTYLGRPWHPDSRVIFMSSYLDGNVVNPKGWVAWRINNATDERSTASTVY YAEYNNTGAGANVTQRVNWHGFHLLAPHEVRNFTVDSFIDGGSWLPETNVPYHLDLDL GL</aaseq>

Gene Sequence

<dnaseqindica>1565..2283#70..535#ggcgctgcaagacagacagatacatcgatcgatcgatcagagctttttctatcatcattagctagcaagatgaagcagtactacaaagcagcgctgcttcgctactgggtagtagtcccgttcctcctgtggctggtagccacggaggagcaactcgccgccggcgccgtggccggggcagctgccgagtcgtcgtcgacttggggcggccagggccagctgcagctgcctctctgggtgcgacccggagaccggcgcctcctggggatgtctgtggccggcatggcggtggatgccgtcgtggcggccgacggcaccggccagtacactaccatcaagcaagccgtgaaggcagcagaggcggacacgagcgggcgccggtacacaatccatgtgaaagctggcaagtacgtcgaagacgttgagatatggaggcctaatattaccatgataggcgacgggatcgggcgtaccataatcagcggcatgaagagcaaaaacaagaatcgggggacggcctgtacgggcacactgagtaagtaaatcgttttccagtacatatataaatatttgactagatttgtgcttactacgtacatgtgtattaattatgacgactaatcactaattaattggtagctagctagatgatcgatgcgtgtgtgtatatatatatatatatatatatagcgggactagctatttgtttgtcaacaaattttcaacggaataaatcacacagatttttataccgcccgattaacatgatatagtctacattagagcaatataagacacataaaactctttgaccagattaaagaaacaagtatcctagttagaaaatgcactacaaataaattactttacaaaactttagaataaaaaggttacatacgtacgctcacacacgtatatattgcattagaactttatgtaaattatagtgtaattaagaacattgtatttatactgtaattaatatagagagcgggtttcaaaataaaagaataattgaattttaaaatgctattaagcttgtgtatacttacaatatcaagtagatatattgtacagttaatatgctggatcgttatattacataatttatatttgctaatttaaaacaaaaaactaaaagctacaatgtaagttaatacaataaagttatataactgtaactacttacagtataaaactgcaatgtaatttttgttttgcctacataattatatcaaaataacgtgcttgctcagttggtagctagctagacaccctgctctttcatagtggacatggatcatatataggatcaactctagcttcacctccgtacgtgctttgatttctttaagatgatcgatatatataagggagcactaattaaactgtgtgattttagcctgctaaaagtttaacgtcaaattaaccggccagtagcaaaaaattatatatatatgcgtgcgtgcgtgcgtacatgcatggtgcaaattgatatatacatacacatgcatgcatggaacttgttgatatatagtacagtaattgatatacgtacgtacagacgtgcaaaaggacgggttcatcgcgcgagagcttacggtggagaacaccgcggggccgcaggcaatgcaggcggcggcggtggtggtgaagtcggatcgcgccgtcttcttcaggtgcgagataacgggttaccaggacacgctgctggcagatgtttacaggcagttctacagggaatgtgttatctccgggacaattgatttcgtgtggggcgaggcgacggccgtcttccagatgtgccacctcctggtgcgtcgcccgttggagggctcccacaacaccatcaccgcgcaagggcgcaaccactccgagcccgtcgtcgcacgctcgggtttcgtatttcaggagtgcaacgtgtcgaccaaggaggacctgaggggcgtggacacctacctgggccgcccctggcacccggactcccgcgtcatcttcatgtcgtcctacttggacggcaacgtggtcaatcccaagggatgggtggcgtggcgcatcaacaacgccaccgacgagcgctccaccgccagcaccgtctactacgcggagtacaacaacactggggctggggccaacgtcacccagcgtgttaactggcatggtttccaccttcttgcaccacacgaggtacgcaatttcaccgttgacagcttcatcgacggtggcagttggctgccagagaccaacgtcccgtaccatctcgatctcgatctcggtctgtaataatacctgctactctctttatttactgtttgcctgcctatatttgcttggtattggtattgtatcatcgatctcgatgtgctagctcctgtgtgtgtagtatgccatggtttgtacgtaactggtactgtatgatgcatgcgtgctcctgtgtgtgtgtgtatatgcgatatgatggtttgtaactggtactgtatgatctcgatgtgctccgatgtggctgtgtgtattgcgatggttaatggtttgtaacttaattttctttctttatgcactgtctgaacgaggaataagcactgtatatatgtttgtatt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0220400, RefSeq:Os08g0220400

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os08g0220400&oldid=7020"