Os08g0223900

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Revision as of 12:51, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0223900| Description = Similar to Cycloartenol synthase (EC 5.4.99.8) (Fragment)| Version = NM_001067808.2 GI:297608174 GeneID:4344966| Len...")
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Gene Name

Os08g0223900

Description

Similar to Cycloartenol synthase (EC 5.4.99.8) (Fragment)

Version

NM_001067808.2 GI:297608174 GeneID:4344966

Length

7827 bp

Definition

Oryza sativa Japonica Group Os08g0223900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:7539137..7546963

Sequence Coding Region

7539137..7539331,7539581..7539766,7539889..7539978,7540096..7540293,7540631..7540715
,7541106..7541272,7541597..7541785,7542530..7542643,7542738..7542857
,7542937..7543059,7543564..7543662,7544082..7544138,7544619..7544665
,7544738..7544881,7545375..7545552,7546010..7546090,7546273..7546356
,7546763..7546963

Expression

GEO Profiles:Os08g0223900

Genome Context

<gbrowseImage1> name=NC_008401:7539137..7546963 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:7539137..7546963 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtggaagctcaagattgccgagggaggaccatggctaaagagtggaaacagtcatgttggaagagaaacatgggaatttgacccaaattttggaacaagtgaagagcgggaggcggttgaggctgcacggatagagttccagaagaataggttcagaacaagacacacctccgatgttttggctcgcatgcagttagctaaggcgaacaacttcagtattgatctacagaaagaaaaagatggaaaccccataaatattgacacagctacagtatcagatatactgaagaaggcactcagttatttctcagccatacaggcatatgatgggcactggccaggggatttcccaggcccactgtttaccactgcaaccatgatcatagttctatatgtcacagagtcattaactattacactgtcatcggaacatcacaaggagatctgtcgatatctgtacaatcgtcagaacatcgatggaggatggggactacatgcagaaggtgaaagttccatgcttagcacagctctcaattatactgctctgagactacttggggagaatgttgatgatggaccagatatatccatgcataaagcaagaaaatggatacatgaccatggaggtgcaacaatgataccgatcttgggaaaagtgtggctctcggtgcttggagtttttgactggtcaggtgtaaatcctattcccccagaattatttcttcttccatctttcgttcctatccaaccaggacgattatggagtcacttccgaatggcttttattcccatgtcttatttgtatggaaaaaagtttgtcggtcctataacaagattggttatatcattaagggaagagctacatattcatccctataaaaagattgactggaaggaggcacgcaaattatgtgcaaaggaagatgcctataatccacatatgtggctacaagagtgcctatctgactgcctttatagttttggtgagccgtttcttacacgttggccaatttcctacatgagaaaaagagctctataccaaattgctgagttcttgaagtatgaagatgaaaattctcagtatatctgcattggtgctgcacagaaggcattatccatgttgtgctgttggattgaaaatcccaattcagatgcattcaagcgtcatttggctagagtagctgattttctatgggttggcgaagatggcatgaaagttcgggtctgtgcgggtcaattatgggatgttgctttcgcagtccaagcgatattagcgtgtagcatcgcagaagaatttggaagtacccttaagaaagcacatggtttcataaaaacttcccagattatggacaatccttctggtgacttcagcagaaagtaccgtcacatatctaaaggaggatgggccttccaggttgcagatcaggggtggcaggtttcagattgcacagcagaagctcttaaggctttgctactgctgtcaaagtgtttgtcagatggtgcagattatcaaatggaaacctactgctactttgacgcggtgaatgtattactctcgttacagaacccaaatggtgggtatggagcatgggagctagctcgcacatatccatggatggagattttcaacatgacagagatatatgcagacatcattgtggagcatcagtacgtagagtgtacctcatcagtcatccaagcattggcattgttccgggagaagtaccctgggcatcggaaagatgaaatagatcaatgcatcaggaaagcaacagaattcatcgagaagttacagaatgatgatggatcatggtttggatcatggggtatttgcttcacgtatggaacatggtttgcaatagagggtctgtcagccgtggggcagtgttatgatgacagcacctgcattcggaaagcctgtaagtttctgttatcaaagcaactaacaaatggtggatggggggagagtcatctttcatccagaaccaaggcatacacaaacctagatggggagaaatcacatatagtcaatactgcatgggcaatgttggcactcatgaaagctggacaggtagagagagaccccgctcctctgcacaaagcagcaagacttatcatgagcatgcagctcagtgatggtgactttccacaagaggaaatgatcggaagtttcttgaaaaatggccccttgtgttatatggcttatcgcaatatattcccaatatgggctcttggagagtatcagaaattagtatttcagaactatcagacctctagcatcaagcaaacaaatatagctccatctgctggcaatgctgctctgaagaattcagcaagtacaacagcgccaacttga</cdnaseq>

Protein Sequence

<aaseq>MWKLKIAEGGPWLKSGNSHVGRETWEFDPNFGTSEEREAVEAAR IEFQKNRFRTRHTSDVLARMQLAKANNFSIDLQKEKDGNPINIDTATVSDILKKALSY FSAIQAYDGHWPGDFPGPLFTTATMIIVLYVTESLTITLSSEHHKEICRYLYNRQNID GGWGLHAEGESSMLSTALNYTALRLLGENVDDGPDISMHKARKWIHDHGGATMIPILG KVWLSVLGVFDWSGVNPIPPELFLLPSFVPIQPGRLWSHFRMAFIPMSYLYGKKFVGP ITRLVISLREELHIHPYKKIDWKEARKLCAKEDAYNPHMWLQECLSDCLYSFGEPFLT RWPISYMRKRALYQIAEFLKYEDENSQYICIGAAQKALSMLCCWIENPNSDAFKRHLA RVADFLWVGEDGMKVRVCAGQLWDVAFAVQAILACSIAEEFGSTLKKAHGFIKTSQIM DNPSGDFSRKYRHISKGGWAFQVADQGWQVSDCTAEALKALLLLSKCLSDGADYQMET YCYFDAVNVLLSLQNPNGGYGAWELARTYPWMEIFNMTEIYADIIVEHQYVECTSSVI QALALFREKYPGHRKDEIDQCIRKATEFIEKLQNDDGSWFGSWGICFTYGTWFAIEGL SAVGQCYDDSTCIRKACKFLLSKQLTNGGWGESHLSSRTKAYTNLDGEKSHIVNTAWA MLALMKAGQVERDPAPLHKAARLIMSMQLSDGDFPQEEMIGSFLKNGPLCYMAYRNIF PIWALGEYQKLVFQNYQTSSIKQTNIAPSAGNAALKNSASTTAPT</aaseq>

Gene Sequence

<dnaseqindica>1..195#445..630#753..842#960..1157#1495..1579#1970..2136#2461..2649#3394..3507#3602..3721#3801..3923#4428..4526#4946..5002#5483..5529#5602..5745#6239..6416#6874..6954#7137..7220#7627..7827#atgtggaagctcaagattgccgagggaggaccatggctaaagagtggaaacagtcatgttggaagagaaacatgggaatttgacccaaattttggaacaagtgaagagcgggaggcggttgaggctgcacggatagagttccagaagaataggttcagaacaagacacacctccgatgttttggctcgcatgcaggtataatgaaaacttaagttcaactattgcaaagagcttgattcgtacctcaaatcagaccgcagcagcatctgtatagctctataagaaactcacgccagtccttgtaacacctgacattagccacaagcatatgcatttatagatgtgtaaacaagcatgaaactaatcctgaaaaacaaaactaaacagcaaagggaacagcacaatatgatgtttagtatccatctggaattttcatttttgcagttagctaaggcgaacaacttcagtattgatctacagaaagaaaaagatggaaaccccataaatattgacacagctacagtatcagatatactgaagaaggcactcagttatttctcagccatacaggcatatgatgggcactggccaggggatttcccaggcccactgtttaccactgcaaccatggtaagatagtaacatacacaatcaacttcatgtctcctgggattaccatcatatcatacatcaagtttccagcatcaattcaatttgacagggatccttatgtttgtttgttccaactgcagatcatagttctatatgtcacagagtcattaactattacactgtcatcggaacatcacaaggagatctgtcgatatctgtacaatcgtcaggtaacactcaatagttaacaggaagttaatggctactttttaagtaaatacacctaaaagattaattatatttcatataagatgtgaacaagacttaactcaaagtttgtgaaccagaacatcgatggaggatggggactacatgcagaaggtgaaagttccatgcttagcacagctctcaattatactgctctgagactacttggggagaatgttgatgatggaccagatatatccatgcataaagcaagaaaatggatacatgaccatggaggtgcaacaatgataccgatcttgggaaaagtgtggctctcggtaacaatactttcagctgtatcctagttctatactcaaatacgttttcagctagtaattttactaaggtggcttgggatctcaagtttccacaagttagtttaatttatcaaatataataattacctcacctgaattaaagatctttccacctacagaaatcaaatggttaatactagtcaatgagaacatcaaaatgatttggaaaagcaaggttatcaaaagtatcaagtattgttttagtagtatgttagttatgcaaatttcatttgattatgggagtggatcttccactatctacattcccctattgtaaactgtatatttaatattacaggtgcttggagtttttgactggtcaggtgtaaatcctattcccccagaattatttcttcttccatctttcgttcctatccaaccaggtaaaattttcttccttgctatatgttcaattatattagcacagatcttatcaccagactttgaaatgaaacatgctagttagaacatatagattatgctttagttcctgaggtcaagtcgtcttctgcaattactgagcaagaagtccacaataaagcccctatttagagagatatgttgacaggaaaattacaggtgatcaccatcatcaatgatgaagtgaacttcattagcataaaaagcattatcaattcactcattaaatgttgataattttgtattattcgattactttatcttacagttgttccatctgtagaaatagagtagctatgtaaaatagaacaaatcaaatatcattatgggtgcaattttgtttttgtatgcaggacgattatggagtcacttccgaatggcttttattcccatgtcttatttgtatggaaaaaagtttgtcggtcctataacaagattggttatatcattaagggaagagctacatattcatccctataaaaagattgactggaaggaggcacgcaaattatgtgcaaaggtcagttcactaaacttaacacatttctgcctcgcacgagaaatttagcgaggtactcagcaacaggtgctcgctaggccacctcaggaatatttagatataatgccaactaatattatggtctatgtatagacatctagatatgtcaggaattactaacatcatattatcagctactatgaaatagagctaagatgtgctccaatgcttgcaatattcgcatgcttgttgtagttaaatatcagattgtttatcagaagattcaaagtccgtatagcttgaatcaactgcagtaattttctttcattgtgaattcaaatgtaggaagatgcctataatccacatatgtggctacaagagtgcctatctgactgcctttatagttttggtgagccgtttcttacacgttggccaatttcctacatgagaaaaagagctctataccaaattgctgagttcttgaagtatgaagatgaaaattctcagtatatctgcattggtgctgcacagaaggtaggagttcttccttgtcaaaatgagactcatacttaccctagaaatctcagaagaaaaaaaagcagtaatagcttcttattctcagtttccttttaacagattgagaagctgaattaccaactagtatttttgtccaaaagtttctcatgagcctgcaaatcctgcatcaactgcattcatttgctttacaagcatccccatgaaacaagaagtacatagtacagagaacttggttgaaagttaaaactgcatatctttaaaaaaaaggtcgagactgaatatgcatgtgcagagcgcagacaaatgcaaaacaaaataagactttgatatttaaaattaatcaattttcatggagatgcaaaatcttacacagattgttaaatcgaatacacatttagcatatatataaggtttagctaaatgtttattctcagaaagtgcttaaaggtaaatttcaggcttccttatacatgcatagtgaaagacactatgttcagcagacttgtttttacagaatgagtgcacttctgaaaatgcgtggtaaaattctagcatcatttacttctgaaaatacatggtaaaactctagcaccaattttaccatgtattttcattaattgaacactgcacagtgcactcattccataataatgagcctgctgaacataatttctttttctatgcatttcttttgacctgaattttaagctctagcatgtgagtgaacattattttgaacaggcattatccatgttgtgctgttggattgaaaatcccaattcagatgcattcaagcgtcatttggctagagtagctgattttctatgggttggcgaagatggcatgaaagttcgggtaaatataagatcagttcattttatacatctacatcggattgcaataatttgtgcgccaaaattggtaaacacaaaccattgtccattcaaaggtctgtgcgggtcaattatgggatgttgctttcgcagtccaagcgatattagcgtgtagcatcgcagaagaatttggaagtacccttaagaaagcacatggtttcataaaaacttcccaggtatttttggccagaattgaaattatattagtatctttctcacaacttactgcttaacactactaacttaaattttaagattatggacaatccttctggtgacttcagcagaaagtaccgtcacatatctaaaggaggatgggccttccaggttgcagatcaggggtggcaggtttcagattgcacagcagaagctcttaaggtgcagatcaaaatttaaatattaagtgaagaacaaattagcgctacctgatgcagacatgggtcaagcagggttgattttccatttctattcatctgtctaggtttaattgattctgattgattattctcgaaagtaaaatgaaaactgaaaacaagaaaaaggcatgggttgatttttccatttctattcatctgtctgggtttaattgattctgatcgattatgctcgaaagtaaaacgaaaactgaaaacaagaaaaaggcatgggttgattttccaagtctatattcatctgtctaggtttaattgattctgactgatagctcgaaagtaaaaccaaaactgaaaacaagaaaatggagcatggcacatatgcacctaaattccccccaaatctggtgttaatgtctttaagtttacgataccatctgatatcattataccatacatggaagatggagcacacaaatctacaacaaagtaatacagtttattgtttcaggctttgctactgctgtcaaagtgtttgtcagatggtgcagattatcaaatggaaacctactgctactttgacgcggtgaatgtattactctcgttacaggtgattattctgcagcgcagacagtaccacatactatagcatatgatttggacagagttcaccttaaaaaaaaatctactgcccaaataattctctagttccctagaacattaatcatttattttgctatcctatctgttactccctctgtcccaaaaaaaaagtagctatttttggttatgaagccagaaatagctacatttttaggcacagggagtagctaggaaagtaagggccctattcttgaggtcaagtactattcatgtcatcacgtgaacggtgaacagcacccatgggtactgtagaagtccaagttatcatataaaagggaccatgaaactccattgtaattaaagcaatgaatagacaagagaaaggatagatgtagagtaataaagatttgactgaattctatgcagaacccaaatggtgggtatggagcatgggagctagctcgcacatatccatggatggaggtaaatctgctcagcacctcaacctaataactgtatcaatgcactaaatagtgtaactgtaatggcctacgtatgctactatcctctttctttattatcctattatttgatttaggaattatatgattaacgccactgcattctgttattgttacacatatctagaatatactgtcagctcagagttccaaacatagaaaagaagtgagaaaatattaatgtgttattcacagtcacaaggcatacttcagagcattaggactatcaaaggtgaaggagagtatgctatgacttgcagaattcacatttaggatacataaataagagaatataatggaagcaaactagctgaataagttaaatacttagatggcacataatatcaaggatttaaggaaattaacgttagaggagcatggcagtaacaaattatatacatctgaagcactaaataatgagaatttgaattacgttttgcagattttcaacatgacagagatatatgcagacatcattgtggagcatcagtgagaattttacaatctttctttctcaaattctcctattgcagaatgctataacatgcacacatactgcaggtacgtagagtgtacctcatcagtcatccaagcattggcattgttccgggagaagtaccctgggcatcggaaagatgaaatagatcaatgcatcaggaaagcaacagaattcatcgagaagttacagaatgatgatggatcatggtcagcactccttaaaaaaaatactatagaaaattgaagtactaattaaatctatcaattaacataatcctagttacataggagaatgatggcattgctggcacactgcctctgtttagagtgctcttgccaaaatctaagagacagtatgcctaatccggtgaaactaaatgattcaccaaatcgccaaacagaatgggctagatcatcacgttctgagttgcaacacatatttcggattgacaatgtacttatgtacagataagaaaacaatgaaaattgagataatatacagtagcaaagcatattaagagaatcagttgccgatagcattactagtaaagacttttgtataacagaaaaaaatagactggatcgaggttaaataaattcaatggtacatattagattttaaaacactgctacaagtaaatgtaatactgatagctggttgagagattggtaatttggattaatatttttttttctacaggtttggatcatggggtatttgcttcacgtatggaacatggtttgcaatagagggtctgtcagccgtggggcagtgttatgatgacagcacctgcattcggaaagcctgtaagtttctgttatcaaagcaactaacaaatggtggatggggggagagtcatctttcatccagaaccaaggtaacactcccggaatgctttattgtgtcaatcaactttaatttttgacagcttagattaagcatcgggtttaggaaaacttctatctttctttgtcttgaaataaattgaagacaaacagatagcattttctaagaactggtaatcaggtaataacactaggagctaaaatcatccttagattaattagccgacagggtcactctagaaaaaaggacaaacaagtaaatgacatgcattaattgaaacaaaaactgaaaaatcagaagagcatgcaatgtcactgaaagaaaatgtaatagctgatatttgactaattagaggccatctgcatcttttttttcctttcataataattacaaaactccattatttacaatatgattgtttgaagttggcttgcattgctgtatttgattcttgaggctgattgtgtgctatttcaaatcataaacaggcatacacaaacctagatggggagaaatcacatatagtcaatactgcatgggcaatgttggcactcatgaaagctggacaggtattacttctctcagtaagaatttgaaatggtcaaattgcaaagaacggcaatagtaatgtgcagtcaatgtatgtttagcccagaataattcaaccaattgtgtagcttaaagactcatattatattggagtataattcaatgcatttaagtatttaaccaacttttcttctgagttcaggtagagagagaccccgctcctctgcacaaagcagcaagacttatcatgagcatgcagctcagtgatggtgactttccacaagaggtgactgctacatgacatttgtattatacaatttgatgttaactcttgactttccatcgtataagaaatttaagcataatggaacaattattaaagagatctgagtgaaatttaaaaaaataatgtttaagtttcctgcagaacaccctaaccaacctttctattacaggttttgggcaatagatgactcttgttatgagttgcttactaataatttaccactttttagaaattgtatgggaagttatttgaaactaaacaatgaaatctgtactgcattcccattattacccttcatattctctaggaattgtccaaatgctagcgggtcatgtaaatagcctaaacccttagcactcagtgctgttcacactcatttactaatagtttatttgttttgctgtaggaaatgatcggaagtttcttgaaaaatggccccttgtgttatatggcttatcgcaatatattcccaatatgggctcttggagagtatcagaaattagtatttcagaactatcagacctctagcatcaagcaaacaaatatagctccatctgctggcaatgctgctctgaagaattcagcaagtacaacagcgccaacttga</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0223900, RefSeq:Os08g0223900