Os09g0419200

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Revision as of 07:25, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0419200| Description = NAD-dependent epimerase/dehydratase family protein| Version = NM_001069724.1 GI:115479190 GeneID:4347074| Length = 3...")
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Gene Name

Os09g0419200

Description

NAD-dependent epimerase/dehydratase family protein

Version

NM_001069724.1 GI:115479190 GeneID:4347074

Length

3069 bp

Definition

Oryza sativa Japonica Group Os09g0419200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:15729969..15733037

Sequence Coding Region

15730126..15730315,15731474..15731826,15732240..15732428,15732533..15732687,15732818..15733004

Expression

GEO Profiles:Os09g0419200

Genome Context

<gbrowseImage1> name=NC_008402:15729969..15733037 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:15729969..15733037 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaccgtcgtcgtcgttgccgatgacgccgccgccgccgcagcggcggcgcagcagcaggaggagctgccgccggggcacggccaaacggtgtgtgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagctgctgctggagaggggctacaccgtgaagggcacagtgagaaacccagatgacccgaagaacgcccacctgaaggcgctggacggcgccgacgagaggctggtcctctgcaaggccgacctcctcgactacgactccatccgcgccgccgtcgacggctgccacggcgtgttccacaccgcctcccccgtcaccgatgaccctgagcagatggtggagccggcggtgcgggggacggagtacgtgataaaggcggcggcggaggccggcacggtgcgccgggtggtgttcacgtcgtccatcggcgccgtcaccatggaccccaaccgcggccccgacgtggtcgtcgacgagtcctgctggagcgacctcgagttctgcaagaaaaccaagaactggtactgctacggtaaggcggtggcagagcaggaggcgtgcaaggcggccgaagagcgcggcgtcgacctcgtcgtcgtcagccccgtgctggtggtcggcccgctgctgcagccgacggtgaacgccagcgccgtgcacatcctcaagtacctcgacggctcggccaagaagtacgccaatgccgtgcaggcgtacgtggacgtgcgcgacgtcgcggctgcgcacgtccgcgtcttcgaggcgccggaggcctccggccggcacctctgcgccgagcgcgtcctgcaccgtgaggacgtcgtccacatcctcggcaagctcttccccgagtatcctgtgcccacaaggtgctctgacgaggtgaacccacggaagcagccgtacaagatgtccaacaagaagctgcaggatcttggcctccacttcatacctgtgagcgactcgctctacgagacggtgaagagcctccaggagaaggggcaccttccagttctgagcaaagagatcccagaagagttgaatggtgtgccagcatga</cdnaseq>

Protein Sequence

<aaseq>MTVVVVADDAAAAAAAAQQQEELPPGHGQTVCVTGAAGYIASWL VKLLLERGYTVKGTVRNPDDPKNAHLKALDGADERLVLCKADLLDYDSIRAAVDGCHG VFHTASPVTDDPEQMVEPAVRGTEYVIKAAAEAGTVRRVVFTSSIGAVTMDPNRGPDV VVDESCWSDLEFCKKTKNWYCYGKAVAEQEACKAAEERGVDLVVVSPVLVVGPLLQPT VNASAVHILKYLDGSAKKYANAVQAYVDVRDVAAAHVRVFEAPEASGRHLCAERVLHR EDVVHILGKLFPEYPVPTRCSDEVNPRKQPYKMSNKKLQDLGLHFIPVSDSLYETVKS LQEKGHLPVLSKEIPEELNGVPA</aaseq>

Gene Sequence

<dnaseqindica>2723..2912#1212..1564#610..798#351..505#34..220#atccaacaaattgcctaacactaacaagcaacgatgaccgtcgtcgtcgttgccgatgacgccgccgccgccgcagcggcggcgcagcagcaggaggagctgccgccggggcacggccaaacggtgtgtgtcaccggcgccgccgggtacatcgcgtcgtggctcgtcaagctgctgctggagaggggctacaccgtgaagggcacagtgagaaacccaggcacgcacgcacgcacaaattcgctggacatccatgcaaataatttttgatcaatgataaaaatgtccgtacctgtgtggctgtgtgcttgacttggcgtcgaccgtcgacgtgatgcgtttctgtgtagatgacccgaagaacgcccacctgaaggcgctggacggcgccgacgagaggctggtcctctgcaaggccgacctcctcgactacgactccatccgcgccgccgtcgacggctgccacggcgtgttccacaccgcctcccccgtcaccgatgaccctgtgcgttctctctgtacacgttttcttgcgtagctgcatcttgcatactactgcctagtgatatatgctaacacacgaatcatatccatggcacgatgatgcaggagcagatggtggagccggcggtgcgggggacggagtacgtgataaaggcggcggcggaggccggcacggtgcgccgggtggtgttcacgtcgtccatcggcgccgtcaccatggaccccaaccgcggccccgacgtggtcgtcgacgagtcctgctggagcgacctcgagttctgcaagaaaaccaaggtcagcaataaacctctccatgaaaactgcatacgtacgtagcttggttcagtgtaacaaaaccacgtggatactagattaccagcttacctaaactgcaagggcaatttgccagcttattcacagtagcaaaagatattgattacacagttcctatcaccaccaaccctttattttcagaccattttttgtgagaagaattaatttttatcttatggtcacgacatcacgcgacgcgcataattattactccctccgtttcatattgtaaggctttctagtgttgtccacattcatatatatgaatggtaatgctagaaagtcttacattgtgaaacggaggaagtaattacataaacatgagctgacctgacgttaacgacgagtggtcgactgtcttttctgctcatcagaactggtactgctacggtaaggcggtggcagagcaggaggcgtgcaaggcggccgaagagcgcggcgtcgacctcgtcgtcgtcagccccgtgctggtggtcggcccgctgctgcagccgacggtgaacgccagcgccgtgcacatcctcaagtacctcgacggctcggccaagaagtacgccaatgccgtgcaggcgtacgtggacgtgcgcgacgtcgcggctgcgcacgtccgcgtcttcgaggcgccggaggcctccggccggcacctctgcgccgagcgcgtcctgcaccgtgaggacgtcgtccacatcctcggcaagctcttccccgagtatcctgtgcccacaaggtgagtttctgtatgtgtgctagtgatctgtaatccatctcttgatctgcccatgcccttgcatgttaatcagttgtgtagatactagtagatatatagatagcttagcttcaaaaaagatagtactagattatgccgcttacatgcttaggacattttcattgctttagttaagcatttagcacttgtatgctcctgcccccggcacctataacttccacctctgtcgattaatgcatcaaacacaaacacatgttacaagtgatattcctatttttttttcctagatgctaggtgtagtcctataaatgtcttactaaggatatggtttttcatcccttaaagcaatatcccttgttttctaatgtcattttcatatattcatgaaacaatttgacaacataaattaatttgagatatattattccacaaatatacaagctaatttgactaaaaaaacaaatatacatgtgaataggtgcaatatttattttttgttttcaagttatggatcgaatttaaacttacatatttgttaaatgatataccacatattaatatatcttcttcttttttagaaaaaaaccatgactatttcgatggcaataaaaacaaggggcactccattttctcttatgaaatttgtacgtagaactatagtgtgtccagcaaaactaaaatataaaattactgaaccgaaccacaatgattatttggcaaacttttatttactactacctctggtactactccataagaattagtttgcttataacttgtcgagtgtacttggtagggtggatcccacctttggttggtgagtaagataagggtactagtaaagcataagaaataaggtgcaggtgaaccaaacacacacgagtgacggcaggcaatacactttcttaagcttactggagaagattttagaatgtaaagattttataccatcatgggtaatattgaagctatttatcagtccactcctctcaacacgacaaaaggtggaaaaatgaacacataacctacactaactgcagtttcatatacgagtatatgttagcaagtagtaactacaaatgcatctaggcaaagttggaaacaacaactcaccacagtatgatgcaccattgctgaagcttgccatggttgttccaggtgctctgacgaggtgaacccacggaagcagccgtacaagatgtccaacaagaagctgcaggatcttggcctccacttcatacctgtgagcgactcgctctacgagacggtgaagagcctccaggagaaggggcaccttccagttctgagcaaagagatcccagaagagttgaatggtgtgccagcatgatactgttgaagaaacagagcatttaacgttctcctgtaacagtgttaggcatctgttgttatgtatgtaaactaagtggataacgaaaaaacatggagactatcattgaatataaacagacgtgaattctgccccttcagaaattatatatttatgt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0419200, RefSeq:Os09g0419200