Os08g0240800

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Revision as of 12:52, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0240800| Description = Similar to Actin filament bundling protein P-115-ABP| Version = NM_001067870.1 GI:115475476 GeneID:4345036| Length =...")
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Gene Name

Os08g0240800

Description

Similar to Actin filament bundling protein P-115-ABP

Version

NM_001067870.1 GI:115475476 GeneID:4345036

Length

10128 bp

Definition

Oryza sativa Japonica Group Os08g0240800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:8507467..8517594

Sequence Coding Region

8508626..8508681,8509238..8509337,8510072..8510140,8510217..8510457,8510541..8510720
,8510809..8510941,8511049..8511211,8512378..8512528,8512613..8512713
,8512980..8513135,8513452..8513520,8513603..8513671,8513750..8513887
,8513986..8514114,8515180..8515327,8515443..8515453,8515546..8515686
,8515775..8515900,8516018..8516083,8516341..8516638,8516734..8516942
,8517036..8517149

Expression

GEO Profiles:Os08g0240800

Genome Context

<gbrowseImage1> name=NC_008401:8507467..8517594 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:8507467..8517594 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggtttctatgaaggatttggatccagcttttcgtggtgctgggcaaaaggaaggcttggaaatatggcgcatcgagaacttcaagccagttcctattcctgcgtcttcatatggaaaatttttcatgggtgattcttacatcatcttgaagacaactgccttgaaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcaggatgaatctggaactgcagcaattttaacagttgagcttgatgctgcacttggtggacgcgctgttcaataccgagagatacaaggcaatgaaacagataagttcctctcatattttagaccatgcatcatgccacagccaggaggagtggcatctgggttcaagcatgttgaggtcaatgagcaggagcacgaaacccgtctgtatgtctgtacagggaatcgtgttgttcatgtcaaagaggttccttttgctcgatcgtccctgaatcatgatgacatatttattctggacacgaagtccaaaattttccagttcaatggctccaattcgtctattcaagagcgtgcaaaggctcttgaagtcgtgcagtacatcaaagatacatttcacgagggcaagtgtgaagttgcagctgttgaggatggcaggttgatggccgatgctgaagctggtgaattttggggtttttttggtggctttgcccctctaccaaggagagcccctgtagaagataatgagaaatatgaagaaactgttttcaaattgctctgttttaaccaaggaaagttggagcctatcaattatgaatccttattgcacgagttgctcaagacaaataagtgttacttgttagattgtggtgtcgaattatttgtttggatgggcagaaccacatctttgcaggagaggaagagtgccagtgaagctgctgagaaattgctctctgatgataaccgaacaaaaacacatgtaatcaaagtaattgaggggtttgagacagttatgttcaagtcaaaatttaaagagtggccacagacacctgacttgaaattgtcatctgaggatggaagaggaaaagttgcagctcttctgaaacgccagggcttaaatgttaagggcctgatgaaagctgctcctgcaaaagaagaaccccaagcttacattgattgcactggcagtttgcaggtctggcgcataaatgataaggacaagatacttctgccatctgctgaccaatcaaaattttacactggcgattgctacatatttcaatatatgtaccctggagatgacaaggaggagtgtcttattggaagttggtttgggaagaagagcattgaggaggatagggtaactgctatttcacttgcaagcaagatggttgagtctgcgaaatttcaggctgtccagacacgactatatgagggaaaagaaccaattcaattcttcgtcatatttcaaagcttccaagtgtttaagggtggtctaagctctggatacaagaaatttattgctgaaaatggtattgatgatgacacttatttggaagatggacttgcgctcttccgaattcaaggttcaggaccagaaaacatgcaggcaattcaagttgatgctgcggcatcgtctttgaattcatcctattcgtacatcctacatgatggaaatactgtattcacttggactggaaaccttactacgtcattagatcaagaggtagttgagaggcagctagacataattaagccaaattcgcagtccagatcgcagaaagaagggtcagaaacagatcaattttggagcttacttggaggcaaatctgagtatccaagtcaaaagataggaagggcaaatgaaagtgatccccatcttttctcatgtatcctacccaaaggcaatttaaagatcaaagaaatataccacttcactcaagatgatctgatgacagaagatgtattcattctggactgtcactcagatatatttgtttgggttggccagcaggtagatgtcaaagtgcgattacaagctctggacattggtgagaaattcgttaagcttgatttcctgatggaaaatctatccagcgacacaccaatttttgttatcatggaaggaagtgagcctacatttttcacaaggttcttcacttgggactcagcaaagtcacttatgcatggcaattcataccagaggaagctttccattgtaaagggtggaggttctcctgctttggataaaccaaagcgacgaacaccaacatattcagggagaagcactgtacaagacaaatctcagcgctcgaggagtatgtctttcagccctgaacgtgtccgtgttaggggaagatctccggcattcactgcattggctgctaactttgaaagtgcaaacagcagaaatctttccacccctccacccgtagttaaaaaactttacccaaaatctgccacacctgactcatcaagtgcaccgtctaagtcatctgcaactgcttctctcactggttcttttgatcgccctaaatcagtaaaagatggatctgagttggagaagccaaagcaagaggaagatgcaaaagaaggcattaacaccatgaccagtagagttgaatctctcactattaatgaagatgtaaaagaaaatgaaccagaagatgacgaggggctcccagtatacccatatgatcgcctgataactacagctgctgatcctgtcactgaaattgacgttaccaggcgagagacctacttatcttcggctgaattcaaagacaagtttggaatgacaaaggaagcattcagcaagcttccaaagtggaagcaaaatagaatgaagatcgctctccaacttttttag</cdnaseq>

Protein Sequence

<aaseq>MSVSMKDLDPAFRGAGQKEGLEIWRIENFKPVPIPASSYGKFFM GDSYIILKTTALKNGSLRHDIHYWIGKDTSQDESGTAAILTVELDAALGGRAVQYREI QGNETDKFLSYFRPCIMPQPGGVASGFKHVEVNEQEHETRLYVCTGNRVVHVKEVPFA RSSLNHDDIFILDTKSKIFQFNGSNSSIQERAKALEVVQYIKDTFHEGKCEVAAVEDG RLMADAEAGEFWGFFGGFAPLPRRAPVEDNEKYEETVFKLLCFNQGKLEPINYESLLH ELLKTNKCYLLDCGVELFVWMGRTTSLQERKSASEAAEKLLSDDNRTKTHVIKVIEGF ETVMFKSKFKEWPQTPDLKLSSEDGRGKVAALLKRQGLNVKGLMKAAPAKEEPQAYID CTGSLQVWRINDKDKILLPSADQSKFYTGDCYIFQYMYPGDDKEECLIGSWFGKKSIE EDRVTAISLASKMVESAKFQAVQTRLYEGKEPIQFFVIFQSFQVFKGGLSSGYKKFIA ENGIDDDTYLEDGLALFRIQGSGPENMQAIQVDAAASSLNSSYSYILHDGNTVFTWTG NLTTSLDQEVVERQLDIIKPNSQSRSQKEGSETDQFWSLLGGKSEYPSQKIGRANESD PHLFSCILPKGNLKIKEIYHFTQDDLMTEDVFILDCHSDIFVWVGQQVDVKVRLQALD IGEKFVKLDFLMENLSSDTPIFVIMEGSEPTFFTRFFTWDSAKSLMHGNSYQRKLSIV KGGGSPALDKPKRRTPTYSGRSTVQDKSQRSRSMSFSPERVRVRGRSPAFTALAANFE SANSRNLSTPPPVVKKLYPKSATPDSSSAPSKSSATASLTGSFDRPKSVKDGSELEKP KQEEDAKEGINTMTSRVESLTINEDVKENEPEDDEGLPVYPYDRLITTAADPVTEIDV TRRETYLSSAEFKDKFGMTKEAFSKLPKWKQNRMKIALQLF</aaseq>

Gene Sequence

<dnaseqindica>1160..1215#1772..1871#2606..2674#2751..2991#3075..3254#3343..3475#3583..3745#4912..5062#5147..5247#5514..5669#5986..6054#6137..6205#6284..6421#6520..6648#7714..7861#7977..7987#8080..8220#8309..8434#8552..8617#8875..9172#9268..9476#9570..9683#tctgcccgctttgcctctttttccctttcctttctctctcgagccttcctcttcctcttcctcttcctcctctactccacctcccctctcgccgctccagatcgattcccccccccacctcgcccgcgcgaattccccgctccgatctccgccgcctccctcccaggtcggtgctctcgatcttccgccgcttgctttttttttttgtttttttttggagatagtttgcttgagctttggtggactaatggtggactcgccgcttatcgcggcggcatgcgcgtggaggtatccggaggtgagcggagggggggaggcggccgtggttagggtaggaggagacggggttcaggagggggtggggggtggggtggagttgcggcggggagcttcgcatttgctggttatttgggaggtatggagccgggttgggtgggggctaatcgcgtgaggttttaagcttggttgctatgaggggaggaatggtttggggggtggtgatgcttcagtgagctgtgttctgtccagcctcgcgcggcgggcggcgcctagtggttgggagactgggagtgctcatttgattgattgatccagattcgtgcctctcggtgcctgcttaaccatttggaattggatcattgttcaattgtgtagacataacccttaggaagcgcaaacttcttagcttgctgcattgctttgacagttctagtcattgtttggggaacttagggtcatgtcccatggtcatgttggttgtgaaatgcaaatgtgctagtcagacttctacaatacattggagtgtgtatttcgatgcggaaatggcgtactgcatatttttcacattctatatggggcatgtagtcaccattagtgatatgatagtatgcctgttttggttcatccttactttaatgttagtagacattgtatcatcaaagctgactttctttatataaccagaatacctaatacttggcatgtcttcggtcgtgtttcttaacaactgaactatctagtttaattttcgtaaaaaaggaaaaccaagtgcattttcgtttgctaattaattactgcccaccttttctacccctgtttacagcatactattagctctcctgtgaaagagaagaattgagaggtttctttaacatcaaggatgtcggtttctatgaaggatttggatccagcttttcgtggtgctgggcaaaaggagtatccttttttttaatttcaccttagtgtactttcctctattgctttcattatcttcaccttgattgaagtcacttaatttgcaagataacattacttaagtcaaccaggaaaacttctttgtgcatgttgaaactctgaatttgtggtttagttgttttttgtccataagttgagtgaacactatctaccatgttgaattaattggtcctaagaagataatttaattgtacacttctgctaaaacaagtaaaatgcatttgtttgctagatgatcatgaatttgcaatgctactgtgcacacatatgaagtatcctgacaggtgcaagcttcttgacaatatgctagacattagcattagcagagtagaagttaatgagataacaatgatcacagggtctgtagtgatttagcagaagcctttttttctttaaatattcattaaactcttgatcttttttgagtatttacaattgacaatctgttcagttcactattttattggtcctagtccaatcaatgtacaaagccacgattatccttaatacactacagaggcttggaaatatggcgcatcgagaacttcaagccagttcctattcctgcgtcttcatatggaaaatttttcatgggtgattcttacatcatcttgaaggtatccaagtacatattatatggtgtcataactcataatccatatatcatcctctcttttgtcctcttattcatatcattagtcttttgcctaaaatagtctatccatgttcagttatagagtataaatttatgcttattctatagcttgctcaaccatataaatgttcgcctgttttacatggcaaaattgtttagcattttcatggtactccctccgtcccacaatataagggattttcagtttttgcttgtaacgtttgaccactcgtcttattcaaattttttttgcaaatataaaaaatgaaaagttgtgcttaaagtactatagataataaagtaagtcacaaataaaataattaataatttcaaaaaattttgaataagacgagtggtcaaacgttacaagcaaaaactcaaaatcccttatattatgggacggagggagtatctagcaagcctcataaaaagctcccaagtgtttgcccccatgttactgcaatatgacagtttcattcatatgtactgttctctcatggttttaggaaactgaaatagtttcttaaattttctctgacaccacagctctaaatctcttattaccatattatgacataaactatcttctgaaatttactgttttgcatctaattctcatggaaaaagggaaatgctttgctgcataattctcaatcaatgtaataatgtttcatcgtgctctttttttcttcctagacaactgccttgaaaaatggttctcttcgacatgacattcattactggattggcaaagatactagtcaggtaaaattctcataattagatgatgcagactttcagttcttcaaaagtttgttgaaaccaattctatgcatggtaggatgaatctggaactgcagcaattttaacagttgagcttgatgctgcacttggtggacgcgctgttcaataccgagagatacaaggcaatgaaacagataagttcctctcatattttagaccatgcatcatgccacagccaggaggagtggcatctgggttcaagcatgttgaggtcaatgagcaggagcacgaaacccgtctgtatgtctgtacagggaatcgtgttgttcatgtcaaagaggcaagctatctagataactgttttcttcttcagaaaggggctttctattcatgtcttgatcagactttctattcaattactaggttccttttgctcgatcgtccctgaatcatgatgacatatttattctggacacgaagtccaaaattttccagttcaatggctccaattcgtctattcaagagcgtgcaaaggctcttgaagtcgtgcagtacatcaaagatacatttcacgagggcaagtgtgaagttgcagctgttggtaagttattctatttcaggtccttgtgtgttcatagtactggaacaatgatattttccgcatatgtttgattgtacttttttcatagaggatggcaggttgatggccgatgctgaagctggtgaattttggggtttttttggtggctttgcccctctaccaaggagagcccctgtagaagataatgagaaatatgaagaaactgttttcaaattgctctggtaattaattggaaatgtgctatttatatacaaaccctgtgttcatttgttgaagacaacaattttcacttgaggtcagtcaatatttatgaaatgcatcttttcagttttaaccaaggaaagttggagcctatcaattatgaatccttattgcacgagttgctcaagacaaataagtgttacttgttagattgtggtgtcgaattatttgtttggatgggcagaaccacatctttgcaggagaggaagagtgccagtgaagctgctgaggtaacatgttcttctttcaagaaatacttatgtaatgtcatcacattcttgtgaaacagaaatatctttatctttacctattataaaagtttaagatgtttttgccaacttttttggtacgtcgtccctggaggcgccagtccgattctctccccgtacgcgaaacggacaactctaggtggtttgctatatggcttgattccgaggtcgatatgatgcgattttgctctaattcttggaaaaagggaaagagaaagagataaggatcaaaacccctcaatcaattttggattatctccgtggatgcgaacggatttcatggagggggcggtttccggcggtgttgggaagctgcggagtcggacggaggtaggggacgaccctgtagcactgggacccacgcgacagtgagaggaggagaagggatgctgattagactttgtggttgcttgatgggctggatgcgcgcttgcaggccgaggtggaagggaggagaagtgaggttaatgggccggctcagctacgggctaaagaaagaatgggctcaaaatggcccagggagaaaggagggttttcatttagatttccatttaaataaatgctaaaatgatgtttgtattattaaaattagcaatggtgctctgaaaatatcggaaaaatttcacatagtgtaattaatcatggagaatttaataaaaaataaatccagccatagtttatttggaaaattttatttttccacatttaccttgatttttacgagcctttcttttcttcaacatcgtatacatgtatagttgtgattttatattttaattaattacataatgtaaatttttcttaaccttttcttaaatttctcatgttttcttccgttgcaatgcacgggcattttttccagtaatcacataagcttgaaagcttggaggaatgaaaccagaattttccaacatgcttgcattttcattgtggcattgatgaaatgatgagccaataattctgctgaattttagaaatttggttacttagtccagatcacccagaaaagaacataaactttttctggagaaatatatcacataattttatacatctaatatatctcaaattaattctggatcttgaactattttgccgtcatacttaatgtttgtttgtgtatgcagaaattgctctctgatgataaccgaacaaaaacacatgtaatcaaagtaattgaggggtttgagacagttatgttcaagtcaaaatttaaagagtggccacagacacctgacttgaaattgtcatctgaggatggaagaggaaaagttgcaggttattatatgcaatcttgtcaattcactgtttcttttccattgataaaatgttctgaccttttttctattaattttctcgaagctcttctgaaacgccagggcttaaatgttaagggcctgatgaaagctgctcctgcaaaagaagaaccccaagcttacattgattgcactggcagtttgcaggtgtgtttctgcactatctgacttgtcaattctcaacaatagtgtttttaacatcatctcatttgcctgaaaaattttcagatctttagtatcacttgaatattttggccttttatattatcttatgtttattgtctcctaaattttttaatttttacaagaatgttttcctgtcaagattttatttctgctctatatgttcaatttctgggtctctgagagctaaaatgtccacacatttttcttttttctatatctgttatcaggtctggcgcataaatgataaggacaagatacttctgccatctgctgaccaatcaaaattttacactggcgattgctacatatttcaatatatgtaccctggagatgacaaggaggagtgtcttattggaagttggtttgggaagaagagcattgaggtaaaatttatctttgatttcatgttcatagttataagattgtatttagagtttccaccttatagctcacaattagtttttaattaagttatcaatgaagtccggactttaggacaatgaagaaagaacttagaaggttctatggacagcatatgcttctgttttccatccttttgatttatgaactggaagccacaatgatctatctgtttctgttaagaagtggcattttggataacagcatgcggttgttacatgttctgttagtgcatactagaaaatgtaggtgttaaaaaatatttcaatttggattcaggaggatagggtaactgctatttcacttgcaagcaagatggttgagtctgcgaaatttcaggctgtccaggtaacctactagtttctccatatttcattagtgaaccagacatgacttccttgtgtatctaattgttcttggttacatgcagacacgactatatgagggaaaagaaccaattcaattcttcgtcatatttcaaagcttccaagtgtttaaggttcccttctataaaatactgttagctcaggttgaacacaacatccaattcttagtttctttccctttttcattatagggtggtctaagctctggatacaagaaatttattgctgaaaatggtattgatgatgacacttatttggaagatggacttgcgctcttccgaattcaaggttcaggaccagaaaacatgcaggcaattcaagttgatgctgtaagttctcacattttcattcctaaagatatgtttgaactccttttggaattagattatattgcttccaaggtaacttgatcatgctctttcattaggcggcatcgtctttgaattcatcctattcgtacatcctacatgatggaaatactgtattcacttggactggaaaccttactacgtcattagatcaagaggtagttgagaggcagctagacataattaaggtatggaacaatcctccttgataaggcatacacacttttgaagttgtacttgatcaattcctattgttattttggaaaacaaatattgcattaacatcttgagtaattactccctgcaaaggtttaccacagtacactatgaagatgtcaggggaaatgataaaacaaaggaacctgttagatcatccatctactaggcatattatttgcatcttctttttcattatttgttttctattaaaaaggaagagaaaggactaacacacaggacgtggcagatgacatggtaaaaaaggatgatgtggcaagccaccacactcaaaatcacttgcaaaacaatcatagggatattatttgcatggttttgatagttgggggatggattccgtttggtattgcattgaggaatgaaaattaaaccaatgaagaattgaggaaccgagtatagactttcttatatatcagaccaagtgcaacttcttttagaggaaaggcttttacacccggtttaatgaaacttcccatgaggcatgaggcgcacacacccggcttaaaaactaaaactagatagatcagacttagcacagcccagctcaaaagaacaaaacaaagacaggaaatgcagcatcctggaaactagacagatcagactgacacgcgcaacacctagagcacctacaagggacaccagctagacaaagactgagagcatagccagaccacagctcatatcccaagcactagtgacttgacggacatcttctcctagctctctttgtttgcattaacctgggtcttctgttgtgcataacctggaactttgttttgcataactaactgaaacttgggatgatttggctccacttagcccaatcccagaatgacagaattgagaatttctagtgcaggctggttcccagcagttttctattcccttactaggaatacttgcaagtcttattatttgaaatttgttgtgtaccgcatacttgtgttccttcttgcttatgatatctatcaagtagtgacaatagaattgttcgtgctttgctttcttcatcacagccaaattcgcagtccagatcgcagaaagaagggtcagaaacagatcaattttggagcttacttggaggcaaatctgagtatccaagtcaaaagataggaagggcaaatgaaagtgatccccatcttttctcatgtatcctacccaaaggtaaccatgaattgaccattctattataatttattcagttcacattgctcttcgagttttctgatatatatctgctcttctattctgccaacaacacctattggggtccatgaaggcaatttaaaggtaataaagtaaaattgtgacatatacaggtctgcacatattctctgtttttgcatttaacactgactgagctgtgaaatctatttgagcagatcaaagaaatataccacttcactcaagatgatctgatgacagaagatgtattcattctggactgtcactcagatatatttgtttgggttggccagcaggtagatgtcaaagtgcgattacaagctctggacattggtgaggtaatgatttgtttttccatgctgaagcactttaggtggcatctccttttcttttggtcactgactattatttttaatactgcatcagaaattcgttaagcttgatttcctgatggaaaatctatccagcgacacaccaatttttgttatcatggaaggaagtgagcctacatttttcacaaggttcttcacttgggactcagcaaagtcacttgtaagtagaatattcataagatgaacaactgtagtttgtgttccttttggcagaagcaccataatgctccttgttttcatcttcaatgtgttgtactcactcttgtttctcttgtagatgcatggcaattcataccagaggaagctttccattgtaaagggtggaggttctcctgctttggatgtaagatatgtacaaactttagttgtcttatgatagtctgccatgtcgaaataaccatatatggtattctttgttgcaaactcgttttctgctagacaacagtgttctgtttatcttttgtgtgtacaatcatggaaccacctatttataacatttctagttgtaagtctgtggtctgtaagtgtttttctgtagttagcagacctatctgtggatgtggaacctttgcatttacaatctttctaacttgttaccagaaaccaaagcgacgaacaccaacatattcagggagaagcactgtacaagacaaatctcagcgctcgaggagtatgtctttcagccctgaacgtgtccgtgttaggggaagatctccggcattcactgcattggctgctaactttgaaagtgcaaacagcagaaatctttccacccctccacccgtagttaaaaaactttacccaaaatctgccacacctgactcatcaagtgcaccgtctaagtcatctgcaactgcttctctcactggttcttttgatcgccctaaatcagtaaaaggtatgtgatacacttatcttggaacataaaattgcctttaaacagaggaagggttaatgatttcttgttgtttgtaaaattctgtacaaattaagatggatctgagttggagaagccaaagcaagaggaagatgcaaaagaaggcattaacaccatgaccagtagagttgaatctctcactattaatgaagatgtaaaagaaaatgaaccagaagatgacgaggggctcccagtatacccatatgatcgcctgataactacagctgctgatcctgtcactgaaattgacgttaccaggcgagaggtgaatatatgatcttttcgatacttagctacttcgtattacttatcctcagaccaggtaatgaccacataccccattttgaactaaatgcagacctacttatcttcggctgaattcaaagacaagtttggaatgacaaaggaagcattcagcaagcttccaaagtggaagcaaaatagaatgaagatcgctctccaacttttttagcttgaatcatgcttaaaatttcctcattcaacctccagctaaagcactgtttgatcgtacaagtcaacttgtatatgcctgaatagcccttggcagccatggtcgttgtgcaatgtgtctattttcacattgtgtgggatgagtcctccatttttccttagtctgagtttgcctttgctagtttcggcttattctttcgattcataggtgtgccctcttaccatctcccattttaccaagcgttcagtactggttcgagggtcacacaggtttggttttgaggcttgcagttttgtattaatctaccctggtgtgtccttttttatttttttttctaatgggcatgagggaacgagaagtatgtacagcagagtgccaacactgtaaaatctcagtaacatgtgattattttgttttcgtgtgtaaacatctgttcatttatctg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0240800, RefSeq:Os08g0240800