Os09g0420300

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Revision as of 07:25, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0420300| Description = DNA glycosylase family protein| Version = NM_001069731.1 GI:115479204 GeneID:4347081| Length = 4079 bp| Definition ...")
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Gene Name

Os09g0420300

Description

DNA glycosylase family protein

Version

NM_001069731.1 GI:115479204 GeneID:4347081

Length

4079 bp

Definition

Oryza sativa Japonica Group Os09g0420300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:15788954..15793032

Sequence Coding Region

15789268..15789684,15789918..15790059,15790166..15790249,15790344..15790401,15792400..15792934

Expression

GEO Profiles:Os09g0420300

Genome Context

<gbrowseImage1> name=NC_008402:15788954..15793032 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:15788954..15793032 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcgccggtggcgtcgtccagggtggccgccggcgccggcgccgcgcggaggtcgtccccgtctcctggcccgaggccggctgctggaagcagcgtcgtcagggacaaggacgctactaccatgatgaggaggaggctgtaccagcagcagcacccgccgtcgtcgtccggcgcaagggagccgggggtgccgtccatgctgctgcgccgtgcggcgggcggcggcggcggcgggccgcggtcgctgaacgtgtcgtgcgcgtcggaggcgtcaaacgactcgttctgcagccgggcgtccaccggcaggatcgggcgccggccggtgggcccgcccggcgtcggcgccgcgcacgccctgcggagggcggccgggtcggcggggccgcccgccgctcgcccggtggcccggaaggcggcggccagcgttgcgccggacgtcgcggcgtcgctgatcgccgtggcgaacggcgaggccgcgccggcgttgacggggccgccgaggtgcccctgggtcactcctaacactgatccatgctatgctgccttccatgaccatgaatggggagtcccggtgcatgatgacaagaaattgtttgagatgctagtcctgtctggtgcattggctgaaatgacatggcctgcaattctcagcaagagggaaacattcaaggaggttttcatggactttgatcctctattggtagcaaagctaagtgagaggaaaattctggggccatgcagccctgcaaggtctctcctgtcagagcataggctgcgtataatcattgaaaatgcacaggaggtcctaaaggtcatagaggagtttggatcatttgacaactactgctggggcttcctgaacagcaagccgatggttggcagattccggcacccgcgggaggtgccgatgaagacgccgaaggccgacgccatgagccaggacctgctccggcgaggcttcctcggcgtcgggccgacggtgatctacgccttcatgcaggccgtcggcatggccaatgaccacctcgtcacctgctaccgcttcggcgagtgctgcagctgcagcagcagcactgaagctcctgccgccgccgccatggatggcgctgacaatcacagcaagagcatggtgaaagatcaggaggtgaacatgatctgtggattggtcgagtgcgtcagcttggagccgtcgagagctagagccaccaccgtgctcagcatctcctag</cdnaseq>

Protein Sequence

<aaseq>MSSPVASSRVAAGAGAARRSSPSPGPRPAAGSSVVRDKDATTMM RRRLYQQQHPPSSSGAREPGVPSMLLRRAAGGGGGGPRSLNVSCASEASNDSFCSRAS TGRIGRRPVGPPGVGAAHALRRAAGSAGPPAARPVARKAAASVAPDVAASLIAVANGE AAPALTGPPRCPWVTPNTDPCYAAFHDHEWGVPVHDDKKLFEMLVLSGALAEMTWPAI LSKRETFKEVFMDFDPLLVAKLSERKILGPCSPARSLLSEHRLRIIIENAQEVLKVIE EFGSFDNYCWGFLNSKPMVGRFRHPREVPMKTPKADAMSQDLLRRGFLGVGPTVIYAF MQAVGMANDHLVTCYRFGECCSCSSSTEAPAAAAMDGADNHSKSMVKDQEVNMICGLV ECVSLEPSRARATTVLSIS</aaseq>

Gene Sequence

<dnaseqindica>3349..3765#2974..3115#2784..2867#2632..2689#99..633#acctatagctagctagctcgtcacacacacctcacaggctcacacagtagtgctcgtccgcctcgctagctcgctagctacacgtgtaccgtgccgtgatgtcgtcgccggtggcgtcgtccagggtggccgccggcgccggcgccgcgcggaggtcgtccccgtctcctggcccgaggccggctgctggaagcagcgtcgtcagggacaaggacgctactaccatgatgaggaggaggctgtaccagcagcagcacccgccgtcgtcgtccggcgcaagggagccgggggtgccgtccatgctgctgcgccgtgcggcgggcggcggcggcggcgggccgcggtcgctgaacgtgtcgtgcgcgtcggaggcgtcaaacgactcgttctgcagccgggcgtccaccggcaggatcgggcgccggccggtgggcccgcccggcgtcggcgccgcgcacgccctgcggagggcggccgggtcggcggggccgcccgccgctcgcccggtggcccggaaggcggcggccagcgttgcgccggacgtcgcggcgtcgctgatcgccgtggcgaacggcgaggccgcgccggcgttgacggggccgccgaggtgcccctgggtcactcctaacactggtaagtttcagtttcacacaattcaaacctgctctagctacttggtgattaattatgaattggtttaagttgataacgagttcgttcttaatttgcatatactttttctttataactgccaatacagatcatcgttatataaaataactattaatacagaaataattaaaaacatgtgtttatatatagattagacttcttgtaatcttgtagggacaattgtacatgaaaaatctaggacttcttttggagttgaggttttatgttattttttttacaaaaaaaaaatgtgttacaaaaagcgaccgtttaaccttgctaaaatttgaaacttctgcttgatacgacgatacactgaaatttccaaaaaaaaaaagttggcattatttactcagatacaggttaagttatactacaggatcagatatagtacatataggaatcctagtttactgataatgtatagaagatgagttttggcacaccatacataaatatgttgtcttgctaaataacgtactccatatcagtaggtattctaaagttttcattgatgcatatacgctaaaaaaaattaccattaaaattaaccaaattggacacactcatttgtgcttctgtacttcatgcgtattgcactgtacatcagaaaggagaacaacatagtcgccatcgaacagtggctcgcatccaaacaagcctgattattctgtaacataactgtctcaaataatgctgttgctgcattgacaaaagcttccaaacaccagtcttcactctcttcagctagcacactagcacagtgccttcagcaaagcagatattatccaagtactgaaacaaaatttttgcctccatcttgttaaaggaaaattacaacttgtaaattttatggcaaatcaaccctggggggtgatgattattaattagatcatatgacatcacacatatggtaggtggtatagaagtacaataaaagatgcactcaaatgtttgttggcaggtctgttatctagcaagtacttgtcaattttatcttgcaaaaggattccattacccactaacttgtcggcaatgcaaagtttatgcaaatggagttcatcaaaagcctctaattgtagccaataatctctcaactgaattgaagaatcaagtggcaatagtaccctaataactttgcagtggttaaaccagatcacccatacatatatatctaatttcggatcatatactggctagtaaaattctttagtactccaaaagtaattaaccaattccactacacaggcttaattaccttgacatggattatcatattatgttgcattgtgtataccacaatggtgacccaggctatctttctcttttattttccttttgctggctgcgaagatatgcctatcattgttgttctttagtttatgcaagtacgtacaactgcactttgcatcttttttgcagtgcagtaggcatctggaagccatgaccactatatttaatctctctgatgctctagtattaattctcattttcttattggtattaattattagctgctttttcttagttgtagcagtgagttctgctattctagcttcacatactgtagtacagcaactattgaaaactagtatcattcagttccacatactgtattagtatacgtcaaccataaaaaaacaactatttgaaacgtcaaagcaggatctaggaggctcatcactcttcagtttcttgtgttcttggctctgctcatcagtcagtcctacctgctgcctgctgaccttacacctaattaactgtttagttggggcccttctgtctctttatggacaaaaacattctgcttgtaatctgaagtccgaagcactctatcaaatcttaaatcagtattgtgtttgatcctaaaaacgttgcaagttttgtcaaagttttctttgattcaccgattgctttcatctgaccgtgaggtaatccctgatcatgacattgtaacagatccatgctatgctgccttccatgaccatgaatggggagtcccggtgcatgatgacaagtacgtctaaacccaatcaaattagatacaagttttacttagaattctagtcagataaattataaagttacaattttcagccctgaacctgcaggaaattgtttgagatgctagtcctgtctggtgcattggctgaaatgacatggcctgcaattctcagcaagagggaaacattcaagtaagtattactccttcttttacccactgaactgtctgaagaattgcattcactgatcacatctaacaattataaacttcttaaaactaatgaattaattcaacagggaggttttcatggactttgatcctctattggtagcaaagctaagtgagaggaaaattctggggccatgcagccctgcaaggtctctcctgtcagagcataggctgcgtataatcattgaaaatgcacaggaggtcctaaaggtaagtaagctgacaatctagatatcgatctgtccacatcttaaccctgatgattagcctgaacagccctggcaaccatcatttgctcttacacttaatgacacatctgcttctttctcgcaataatgcaatgcctgtctgaatcattcatgcagcatgcttaatggctgcctctttctgaaaatcatgcattacatgtctgaactctgaacttttctggttgctgttcataggtcatagaggagtttggatcatttgacaactactgctggggcttcctgaacagcaagccgatggttggcagattccggcacccgcgggaggtgccgatgaagacgccgaaggccgacgccatgagccaggacctgctccggcgaggcttcctcggcgtcgggccgacggtgatctacgccttcatgcaggccgtcggcatggccaatgaccacctcgtcacctgctaccgcttcggcgagtgctgcagctgcagcagcagcactgaagctcctgccgccgccgccatggatggcgctgacaatcacagcaagagcatggtgaaagatcaggaggtgaacatgatctgtggattggtcgagtgcgtcagcttggagccgtcgagagctagagccaccaccgtgctcagcatctcctagcattcgctcaatcgacggcggcaatggcgactgatccagtaggagcttcacagtttgttcactgtatagagtgagtgagtttgctgcagtggcctccgtttttcttggcgtgtcagagattgggtttgtgaaattgtgtatatgattgttcatttgaggtttgggtgatatgtgctttgcttgaactgtgtgggttcagagaaagatacatacataggtagccaaaaaaaaaaagtttcagacgatttgatcaccttaccggctgcagatcatgtaaagttgcaatgttggttttatctaattgatcaagtgat</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0420300, RefSeq:Os09g0420300