Os09g0420900

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Revision as of 07:25, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0420900| Description = BTB domain containing protein| Version = NM_001069735.1 GI:115479212 GeneID:4347086| Length = 5660 bp| Definition =...")
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Gene Name

Os09g0420900

Description

BTB domain containing protein

Version

NM_001069735.1 GI:115479212 GeneID:4347086

Length

5660 bp

Definition

Oryza sativa Japonica Group Os09g0420900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:15816850..15822509

Sequence Coding Region

15817158..15817715,15817952..15819118,15819933..15820002,15822109..15822170

Expression

GEO Profiles:Os09g0420900

Genome Context

<gbrowseImage1> name=NC_008402:15816850..15822509 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:15816850..15822509 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaagttcatgaagctgggctccaagcccgacgccttccagtccgacggcgccgacgtcagatatgtgatctcagacctcgcaacagatgtcattgtgcatgtcagcgaagtcaaattttacttacataagtttccccttctgtccaagagcagcaagcttcagaggttagttattaaggccaccgaggaggggactgatgaggtccacatagatggctttcctggaggagtgacagcgttcgaaatatgcgctaagttctgctatgggatggttgttaccctcagtcctcacaatgttgttgcagcaagatgtgcagcagagtaccttgaaatgactgaagatgtggacaagggaaacttgatattcaaaatcgatgtcttcataaattctagcatcctccgtagctggaaagactctatcattgttctccagagcacaaaagcactattaccttggtccgaagagctgaaggtcatcggcagatgtatagatgctattgcttcaaagacatctgtggatccagctaatgtaacctggtcatacagtcacagcaggaaaggaatgagctgtactgaaatagttgaatcaacaggaagaacatcaatagctcctaaagactggtgggttgaggacttatgcgagctcgatgttgacctctacaagagagtgatggttgctgtcaaatccaaggggagaatgtcacctgaattgataggggaagcccttaaagcatatgctgtcagatggctgccagattcttatgatgctttggtcgcggaggattacatgagaaggaaccaatgtttggtcgagactataatatggttattgccgtcagataagacatcaggttgttcttgcaggtttctcttgaaactgttgaaagttgctatattggttggagctgggcaacatgtgaaggaagaacttatgagaaggattagtttccagttgcacaaagcttcggttaaggatctcttactacctgctgcttcacccagtgatggcgcacacgatgttaagttagtccataatcttgtgcagagatttgttgcaagaacagcgatgtcccacaatggtggttttgttgagaaatctgatgacaaaatgattgagcttaactttgaacaagaatccactttggctttaggagagctggttgatggctatctatctgaagtagcttcagatccagacctttcattgtctacatttgttgaactagcaacagcggttccagaagcagctaggcctgttcatgacagcttgtactcagctgttgatgcatatctcaaggagcatccaaacataagtaaagccgacaagaagaagatctgcggtctgatagatgtcaagaagctttcaacagatgcaagcatgcacgccacgcaaaacgaccgcctaccgctccggttggtggtgcaggtcctcttcttccaacagctgagggcgggttccagcaatgcgcttgctctaacggatggtggaggacacacgtgcgcaaagcctattatgaaggatcagagtgacatttgcgaaagacggataccaaggcatccaaactcgctgaacaagcaagcgaccagcctaagcgcgagagaggtcgagcaccggaagagcgagcacaggggaggaggcaggaacagcttcaaggaccagcttggcggcttccttctgcagtcaaggtccaggaggatctttgacaagatatggagcagcaaggggcagggagagaatggcaaaggttcagagacgtcaggtagctcacagagcccgccattgtcggctaagcctgcagatgtgaagccctctcccctcccacctcttaggaacaggagatattctgtttcatag</cdnaseq>

Protein Sequence

<aaseq>MKFMKLGSKPDAFQSDGADVRYVISDLATDVIVHVSEVKFYLHK FPLLSKSSKLQRLVIKATEEGTDEVHIDGFPGGVTAFEICAKFCYGMVVTLSPHNVVA ARCAAEYLEMTEDVDKGNLIFKIDVFINSSILRSWKDSIIVLQSTKALLPWSEELKVI GRCIDAIASKTSVDPANVTWSYSHSRKGMSCTEIVESTGRTSIAPKDWWVEDLCELDV DLYKRVMVAVKSKGRMSPELIGEALKAYAVRWLPDSYDALVAEDYMRRNQCLVETIIW LLPSDKTSGCSCRFLLKLLKVAILVGAGQHVKEELMRRISFQLHKASVKDLLLPAASP SDGAHDVKLVHNLVQRFVARTAMSHNGGFVEKSDDKMIELNFEQESTLALGELVDGYL SEVASDPDLSLSTFVELATAVPEAARPVHDSLYSAVDAYLKEHPNISKADKKKICGLI DVKKLSTDASMHATQNDRLPLRLVVQVLFFQQLRAGSSNALALTDGGGHTCAKPIMKD QSDICERRIPRHPNSLNKQATSLSAREVEHRKSEHRGGGRNSFKDQLGGFLLQSRSRR IFDKIWSSKGQGENGKGSETSGSSQSPPLSAKPADVKPSPLPPLRNRRYSVS</aaseq>

Gene Sequence

<dnaseqindica>4795..5352#3392..4558#2508..2577#340..401#agaggagagagaaagaggagtgagaggagttaataatatcccatcattcacactccacggcatcattggcaactcctctcttccattccattcaaccacatctgtttctttaattgctgcgtttaatcactctcctcctcaccaaccgcttcgttctccgttggtgtatagttgccgcagcagcagcagcactcgccactgttctttctttctctctttctcctcctgctgctgcgttgctttcttcaggcagctagctcagctgcttgtgcgtgcatgggaaggagtaggaggaggaggctctgagagggagggaggaggaggaagaagaagaagaagatgaagttcatgaagctgggctccaagcccgacgccttccagtccgacggcgccgacgtcaggtgaggcgccgccttcgtctcctctccaatctttagcttcggtttgggtgaagaaaagtgtgatcttcgcttgcgtttctttgggtgtctgactctgataacgttgttaggatgcaaaggtggtagtcaaaatctgttcttttttttttcctttgcttgtttatgggaggcgtcgattacgaacgtgtctggttgctgttcatcatgttggtttgctaattattggattggattctttcttgggtagtggtgtaaaagaacgatttttttgaagcttttttggggagatatcttgcaatagaaatcgttcgtttgatggcttctctgtgtttatgaagttttgcgagaatgaaggtggcagctaatagaatgggagtcgtttggaaagttctcttcttgcatcagttttctagcttctcttaattaatagaatgggagtagctatgttttcttttgtcatcttgtggcttgttcatggatttggacctcacattatgcttgagtattggttacaagtcccctgttcgattgctaataccaaatttgttcgtactttgtacttttgttttcttcccaaaaatggtctcccatttgaagttgctgggtgagttgactactgattcttgggaagtgctaagctgtttatcgtttctgctctttctttttttttcttttttctttttgcaaactgtgtcctttgtactaatgtatagcatgcgtgattctctacagttttgtgaactggatccatcacataccaaagtttttccttctgatctttcgagctggcattccttgtttctcttgggattaattttctttcgtgtctatctccttgtcgtgattctatatgctagctgttaaacgtcttagtttacagtgatgggcaatcatctgattaaataaattactctcgttgtgatgcggttaatcattgggcataagctgaagccaaattgccttcctggtatccgtagcttggtagcagttgtttcttggttgtgtttgaattagattgctcaaagtcatttgtcgactaaaaagaaaggctttgtttatgcctgctatatctgagcatgtacttgtttctttttcctcctctttgtggctagggcgctaggttagtgcagaatagatctgagggttaggagaattaagcttcactctgttactattatatggtaggcaccactatgttttgttgttttgggcaacttggtaaagttagatggtttaatttattattaaggaaagaagaaaacgatggtcatctcaccatcttcctaataattgataggagttcactttcccttcagttaaagaatccacactgcaagttgcttcgttacggccggcttttgaaacaatctggtagttctgtactactgatgaatgcaataacatagtgatgagaggcataaagcagaatgtgatgttgggatcttatggcaagatgctttcgtagcaagctaacctgatgaaaacaaggcaacctgagcttaagtcatccttttgtacagataatcctcaaaagagagaaagggatggtgctaatcttaagtgaacatgataggtttttggacattagtggctaacagatgcatgcgtgtcctgattaccaactctagtggcgcctttcgcatgcttttcttaagtgaactggaataaccggaaagcgaggtgtgcaaatgtgcagtctatttaacagccacctcatgttttcgtccattgtcgatagacagtgcatgtctttggcaagacctttataccttagaataataggaatgtgttttgttgttgtcatttgtttgagagagcgactgttcatgatttatgggcagccatatgctggttggatacgcatttgatttcagaatattgatctgagactgcctttaggctcatatactagtttttttttgcaccattctatggttatccaccattgatgtgtgtaatttgaaaaaaaataactccataagaaacgttaaaactaggtaaaagctattattagaattttttaggactattattatattatctagggaaaatatatgtttgtttttgcaatattatttgcttacggtttctattttatgcatgcagatatgtgatctcagacctcgcaacagatgtcattgtgcatgtcagcgaagtcaaattttacttacataaggttgggctcctaatatttctccacaactgcactgaagttaactcaaaagtattatatcttttctttagaatagtgacaaaggtagaaacaagcactgctgctagacatgtattacaacttacatatagtatatcctgaggcttagccgcataggtgctcaaacttaggatttcattttcatactctcagtaacagagcatattcactattcagcatttatgtttcacatctgattgttgctgcgctatcgctttccaataagctgcatactgtttcatgttaaatttttcattggcagtatctcaataaatgtttggtgtgattagtatttatttgtaaatattagaactatagtgaccttgtcatattttcgtttgcatggaaagtttctagcttaaagaaagtgatctatgctgcatgaaaagctgttgaatcaagtaaataataggctgcatggaccacttctgtacttgatcagttgatctctgtgctagcaacccttttgcaagtaattactgttgtgtgagatagctatttaagtcctgctgtgactatcagattgtttcaacaacaattatttgactgaaaatactacttaaagaaacagtaccttggaataagagggatacactgactagtgcaattctccaccttttaagaaaaaacaaactccgacattttgcattgtacaaacgttatttcttataaatgtttatgttttcttgctggtgaatggtgatgattggtattcagggaaatgtcttattgacaaacataactgaaaaaatatttttgattttgattgcttgtgcagtttccccttctgtccaagagcagcaagcttcagaggttagttattaaggccaccgaggaggggactgatgaggtccacatagatggctttcctggaggagtgacagcgttcgaaatatgcgctaagttctgctatgggatggttgttaccctcagtcctcacaatgttgttgcagcaagatgtgcagcagagtaccttgaaatgactgaagatgtggacaagggaaacttgatattcaaaatcgatgtcttcataaattctagcatcctccgtagctggaaagactctatcattgttctccagagcacaaaagcactattaccttggtccgaagagctgaaggtcatcggcagatgtatagatgctattgcttcaaagacatctgtggatccagctaatgtaacctggtcatacagtcacagcaggaaaggaatgagctgtactgaaatagttgaatcaacaggaagaacatcaatagctcctaaagactggtgggttgaggacttatgcgagctcgatgttgacctctacaagagagtgatggttgctgtcaaatccaaggggagaatgtcacctgaattgataggggaagcccttaaagcatatgctgtcagatggctgccagattcttatgatgctttggtcgcggaggattacatgagaaggaaccaatgtttggtcgagactataatatggttattgccgtcagataagacatcaggttgttcttgcaggtttctcttgaaactgttgaaagttgctatattggttggagctgggcaacatgtgaaggaagaacttatgagaaggattagtttccagttgcacaaagcttcggttaaggatctcttactacctgctgcttcacccagtgatggcgcacacgatgttaagttagtccataatcttgtgcagagatttgttgcaagaacagcgatgtcccacaatggtggttttgttgagaaatctgatgacaaaatgattgagcttaactttgaacaagaatccactttggctttaggagagctggttgatggctatctatctgaagtagcttcagatccagacctttcattgtctacatttgttgaactagcaacagcggttccagaagcagctaggcctgttcatgacagcttgtactcagctgttgatgcatatctcaaggtatgttcataacacttacaaatatgtgtatagtactaccctgtttgggattgtgactcatcaataagttactcggtgctgcactcttctaaaactcaagattaatgcatttttatttttcttttgctctggcatagaagcagacttgataaatcacttgtatccaactcaacccctgtaaatgttgtatgttataacttataacggcatctgatcatttgcttctttctaatcaggagcatccaaacataagtaaagccgacaagaagaagatctgcggtctgatagatgtcaagaagctttcaacagatgcaagcatgcacgccacgcaaaacgaccgcctaccgctccggttggtggtgcaggtcctcttcttccaacagctgagggcgggttccagcaatgcgcttgctctaacggatggtggaggacacacgtgcgcaaagcctattatgaaggatcagagtgacatttgcgaaagacggataccaaggcatccaaactcgctgaacaagcaagcgaccagcctaagcgcgagagaggtcgagcaccggaagagcgagcacaggggaggaggcaggaacagcttcaaggaccagcttggcggcttccttctgcagtcaaggtccaggaggatctttgacaagatatggagcagcaaggggcagggagagaatggcaaaggttcagagacgtcaggtagctcacagagcccgccattgtcggctaagcctgcagatgtgaagccctctcccctcccacctcttaggaacaggagatattctgtttcatagggttcttgtttacttcttttaatttagctctgggttaggttgtacagaaaagataagttgatcagctggctgcacatcatttttggtttgatccttgctcagatcagtgaagagaaaggtgtgggggtaagggtgtaagcactaagtactaagcacttgttctacctgctgctttctgtatgtttatcaagttgtagcttactatagtgtcatcttgacttgagagagatttgctagggccttttattggaaatgtctatgaacaagaagcgaaaaactaatgaaaagggttcatgaggttggtgttt</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0420900, RefSeq:Os09g0420900