Os08g0282400

From RiceWiki
Revision as of 12:54, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0282400| Description = Similar to Alpha-SNAP (Fragment)| Version = NM_001067981.1 GI:115475699 GeneID:4345167| Length = 5499 bp| Definitio...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0282400

Description

Similar to Alpha-SNAP (Fragment)

Version

NM_001067981.1 GI:115475699 GeneID:4345167

Length

5499 bp

Definition

Oryza sativa Japonica Group Os08g0282400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:11101731..11107229

Sequence Coding Region

11101867..11102011,11102890..11102939,11103029..11103101,11104469..11104548,11104701..11104852
,11106000..11106159,11106233..11106280,11106465..11106545,11106864..11106944

Expression

GEO Profiles:Os08g0282400

Genome Context

<gbrowseImage1> name=NC_008401:11101731..11107229 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:11101731..11107229 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctctccgggtgggggatcttcggctccaagtacgaggacgccgccgacctcttcgacaagggggccaactccttcaagctcgccaagaactggagcagagctgcacaagtgtacatcaagattgctaactgccatttgaagggtgacagtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctctcctcaagaggctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatggctgcaagatattgtaaggacattggtgagatatatcatcaagaacaagatttagagaaggcttcagattacctggaaaaatcggctgatctttttgacagtgaggggcaatcatctcaatcaaacagtatcaagcagaaagttgcagaaattgctgctcagttggaacaataccagaaggcaaatgagatatttgaagcaattgctcgccaacaaatcaacaataatcttcttaagtacagtgtcagaggtattctcctcaacgcaggcatttgtcagctatgcagaggtgatgttgttgctatcacaaattcaatggagcgatatcaggatattgacccaacattctcggggacacgagaatacaagcttttatctgatcttgctgcagctatggaggaaggagatgttgccaagttcactgatgccattaaggaatttgacagcatgacacgtctggacccctggaaaacaaccctcctcctcagggcaaagaatgagctgaagaaaaaggaggatgacgaggatgatctaacctaa</cdnaseq>

Protein Sequence

<aaseq>MGDHEARGDDFEKKAEKKLSGWGIFGSKYEDAADLFDKGANSFK LAKNWSRAAQVYIKIANCHLKGDSKHEAASAYVEAANCYKKFSPQEAAQALNQAVDLF LEIGRLNMAARYCKDIGEIYHQEQDLEKASDYLEKSADLFDSEGQSSQSNSIKQKVAE IAAQLEQYQKANEIFEAIARQQINNNLLKYSVRGILLNAGICQLCRGDVVAITNSMER YQDIDPTFSGTREYKLLSDLAAAMEEGDVAKFTDAIKEFDSMTRLDPWKTTLLLRAKN ELKKKEDDEDDLT</aaseq>

Gene Sequence

<dnaseqindica>137..281#1160..1209#1299..1371#2739..2818#2971..3122#4270..4429#4503..4550#4735..4815#5134..5214#aacctcctctcctcttctcgccttctccgcttctcccttcccatctgctgctcgcgaatctcctcgtcgtcgtcgtcgtcgtcgtcgtctcctcgccgccgggagaagcgcagggcggagcgcggaggcggaggcgatgggggaccacgaggcccgcggggatgacttcgagaagaaggcggagaagaagctctccgggtgggggatcttcggctccaagtacgaggacgccgccgacctcttcgacaagggggccaactccttcaagctcgccaagaactgtgagtccccccactcccagacgggttccttcctccccaatccaaccccccctcgcgcgctgctccgatcgatcggcgtaggggcgatttgtggttcgttttcctgtgagatctgcggctcgatcgggcgatggggtcgccgggtttggcatcatcctgcttggtgtggggttaggactggatctttggctgcggatctagcaacctgccgcgtaatttggcgcgatcctttgatgcgcgaggcgtggttggattagtgaggcgcggttttaggggatcttttgtaatcgcaaaggaggagtaggttgattgttgttttgttagcggatgttatcggatttgatcccaaaatatacgcagatggtggcgtcttatcggttactgttaagacactatttggcaatgatgcaagatgaactgaaaattatatgctgaacttaattccatgaatcaatcgacatatgcaactgttgtttaatccattgtttcaaactaacaatagggtgtgttcattagacttaaggttcttgcatgggatgcaactcaaactaacaataaactcttaactggtatctaatccaaatacaagtctctatgtcttaatgtgcattgttggacgttagaaacgatgtagcggtctggtctaacatgatggatatatagtgttgttatagtacatcatgactcttttgcttacattcgacctgcatctttccagtttgttcttttagcatttgcatgtctgataattttttgtcgtgataaactcaagcatttatttcactatattgtagtaagatggtttagttactacttttgtctttgagagaacacacccttattcttgcaataattataaccttttttttttgttgcagggagcagagctgcacaagtgtacatcaagattgctaactgccatttgaaggttgccttttatttggtctatcagtttgtcaacttcattgcacggcaatcgaatatgatacttattctgcttgttccttttctgaacagggtgacagtaagcatgaagctgcctcagcttatgtcgaggcggcaaattgctataaaaagttctctcctcaaggtactttctacaacttcaagcatgagcgcatctttaatttctgtgattttttatccttctctctacaatcaccattcagttgcacattgctaaattaaaatctgttagattaaagttgtatttgacatagaattcttgcttctgtttcatatacaactttagcggttaattggcgctgttataataatctagacacctatgacatagatctatcatttttcctccaattaacatgtaatttatagttcctgagagtgaacgaagttgctccttttagcattctcttagtaagatagttagatagacgtgaaacagtatgttgcactgtttctcttctcatttgagtacggaacatgtggttcacttatgttgtacttacaagatgggtaccccgtgtgttactgcgggagaattgtgtgataatataatatatatgaattctaaaattttctttcttatctactatataattttttttcatgtttttatatatttttgtacctttatcaaatatccgaaagttataaatgattgggttgtaaggtgtgccttctgggggaaagagatgtaatttgcaccttgatgaatcatccaaatgctaaaacaaattgaggtgatgtgaatagaagcaatttacacctttgatgaatcatccaaaggctaaaaacaagtgaggtgatgtggtttcatgagagaagagagaattagcatattaactacatttagtggggatgaactttatagatatataggattctgatctgataagaactgttccctttcaacctgtgttagcaatagaattttttaattctgtattcataatgacaagtaaaatttttgttgaatttaaatctatggaatggagatttatttgttgcattctaatctgactaactcaaaacatgtagtctacttttcatggttctaaaatttcactgggcatttgtgatgatatagcaaaaactagactttttgctatcacttgctattgaaaacttgctatgccccataaaacagggagattaaaggactaataaggtgattaagcataaataccagcatatcttgtttgaatctaaaatttaatgtagtgacagtgtgtttgttttgaaggactacagtttgggagattcaaattgattatttttaatgagcctatattgcttctctaacattaagtcatttaaacaattaaaaatagtgaaatttaatagtacaatttcatttcagttacatatccttgaccacctatgcttcttagtctttctgtgatttgatttgtgtttgatttctccctgtaaaaatatatttacgtcagaatggtagatagctgcctttattaacatcgagtccattctatgcagaggctgcacaagcgctaaaccaggctgttgatcttttcttggaaattggtagattgaacatggctgcaagatattgtaaggtgaagtatcatttcatttttctatgcaaaaagattattatttcaataatgattggtatgcctggatgatgacttgtttcaaaatgaagcaccatttttttccatttggaatctgtcatgctgatggtggtgacaactttatgcatcttcaggacattggtgagatatatcatcaagaacaagatttagagaaggcttcagattacctggaaaaatcggctgatctttttgacagtgaggggcaatcatctcaatcaaacagtatcaagcagaaagttgcagaaattgctgctcagttggaacagtaagatccaacttaattaggttcatagcaattttctaatttttaatctattctacgaggatttgtttcaaacatggtatgttaattaagctgccaaagttgatatgaatgctttatctcaatgaagcctgcaaccctgcaccatgccccttcctttttcattactttaacaacaaataaacagctagtttgacttgtacattagtcttgcgtattgcgtggtctatatttcctgtgggtgatgtgatagcattttctcgtttatcgacctcttcagtgttttgttgtatctcttgacttttttatttttttattgctgtattcatacggtggtagttgctgaatattttattaacatctgagtcatcccagttagattgagggtgaaatactgcagaatagctggtcaaaagaaagaccacattggtacttcaggaactataggaattggtttattctgcattgcaggcagaagaaactcttacctcacccattaaatctaatctccttaagtatagtgttttgccactaacgaacttgataatactgcatgtagtctggactaagtgatcttatgcatgaatagtgaactacttgatgctgaataaaacaactaatcttatccctaggcgagcctgtaggtgttggccagcttctggtggtgttgttatgcacaaagtttaaatgtgacagggttcaatacatggttggaacagattagcacagtataggagacatggtttctgggatgtgttctgagaggaaataaagcgctcttcaaattactattttattgtctcatctaaccccactaccactcaagttgcaattcatatgacaccaacttgcattccatttatggtgcaaaattaggcagaaattctgtactccatggaaaactacacatcctaaagcttgatttccttgttttctaacggattgatgcagatgtgggctttgattctactgacggattggtgcagatcttcccattctctgttgtagttctttttccttgttttggtttctgttagtaacttctgttcttaatatgtgtttgttaggcaaattaacatcatgaaataattaacatgaaacaagtaaatctttgtttttgagatggtaactcgttcatattttatttcagataccagaaggcaaatgagatatttgaagcaattgctcgccaacaaatcaacaataatcttcttaagtacagtgtcagaggtattctcctcaacgcaggcatttgtcagctatgcagaggtgatgttgttgctatcacaaattcaatggagcgatatcaggtgtgtactattttgttaaatcttagtggtattatcattgtcatctttctaatgatgtttaactatgttgcaggatattgacccaacattctcggggacacgagaatacaagcttttatctgtatgatacagtgcttattccttctctttgcacacttttttcactccttgtattcattgcatgccaggctttataagcaatatttttgcactagtgaacatgaagtgttaggtcattactctatatagtaaacgtaactatattctttgaaggagcttctgggtctgaatatttttttctgcaggatcttgctgcagctatggaggaaggagatgttgccaagttcactgatgccattaaggaatttgacagcatgacacgtctggtatgttcagttggtggatgacttgtctatgatattgcaatccagtaagcccgtgctacataaaagtataaaaataagcaacctaaaccacattcgctaggctcaagctgcaccaactgatgtatggatattcagccatgttgataacattttctatgatgagtcatgtattgcttctgctgtacaagtttgcatacatcttttcactggttgctgttggcattgttatttcaaatagtgcttcagaagtgatattgtgcacgagatctgcttatgtgttatctagtttctcatttatatacctgatacttatttcaggacccctggaaaacaaccctcctcctcagggcaaagaatgagctgaagaaaaaggaggatgacgaggatgatctaacctaagttttgttgtaaagctcgtttcatgcttaatatggttgcctcctttgcattctggaggctccatgttccatatgatgagcatgagagctgtcgtttgccctgttgtatagaactccttccagctatcatattggatgtttggttgccctggttcttttctggccaccacctgatttgccgtcagtgtttaaactagtaccctacgtgtgttgctgataccttatattataacatgtttgtttcacctgctttcgtcatgatatttattcatgcactttacacacc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0282400, RefSeq:Os08g0282400