Os09g0421800

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Revision as of 07:25, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0421800| Description = Zinc finger, U1-type domain containing protein| Version = NM_001188913.1 GI:297726956 GeneID:9267827| Length = 2343 ...")
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Gene Name

Os09g0421800

Description

Zinc finger, U1-type domain containing protein

Version

NM_001188913.1 GI:297726956 GeneID:9267827

Length

2343 bp

Definition

Oryza sativa Japonica Group Os09g0421800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:15898864..15901206

Sequence Coding Region

15898864..15899265,15899874..15900859,15901110..15901206

Expression

GEO Profiles:Os09g0421800

Genome Context

<gbrowseImage1> name=NC_008402:15898864..15901206 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:15898864..15901206 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagttcccccgccgcggccaatcctcccatcccgccgacgccgacgacgacgaccgccgccgcctccgcttccctgactccaccccgccgagcggacgcgaagctaggccggctccggcgcagggggacgcggtgacggcggcgctggggcggcggagggaggagctgctgtgggagctccacaagacgaagatccaccgggagatgctcctgtgccagctggtcgagacggagcgcgccatggcggcgcgcctcgccgcggcccgcggccaccccgccacgccaccgctcccgtggccgcagggcgacctgctcccggcgcgggagtacgcgtggcggagcacgccgtgggaggagcaggcgaacgcgaacgcgaacgcgcacgcgcacggtgccctctcggcgccgcgctctggtgacgaggagatcaccccgtggtggcgccggagcccgtcggcagtgacacccccggtgtacccgcacgtggagcgctctccgtcgccgccgattgcgcggggatggccggccgacgatgacgagcggcaggaacgtggggagccatccgggtcgccggcgatggctcctccggtgcggcatgcacctcatgtcgaacagtccacaccagtgccgatcaagtcgcctgcggcggaggccgtttgtatgccatctgggtcaccggcgatggctcctccagtgcagcctgctcctcatgtcgagcagtccacaccattgccggccaaggagcctgcggcggtggcgaaggtggaggcagatgccattgtccagactgcggccaatgctgatgccgaccaggcgttgctcggcaagggggcgacaccaggagggcaaggttgcactggtcagaagggtgaggaaggtgatttcgccatcgacggccatggcaggcagctgttgggtgagatgaatgtaagcaagagcaccgagcagccaaaacctacagaatccatctctggaggccacaccgatgaacttgtccagaagcgttatcaagataataagccggcagatcaggagattgcaacattggacaagcagaagcgagtaggttccaatgatgagcttacaccagaaaggagatcctctggtgtgaagaggcagctggcttcaggaacctcactggcaaagaagccgaggtcccaggggagctccatcacttgctccctctgcaaggtcaccatgacttctcccagggcgctggttgagcaccgggcatccctcctgcaccggtctaacctcgcgccattgcgatcggggaacaaggccaccactgaagctgcgcagcccgcggagaagaagaccgagaagccagaggcatctgaatggaacagcagtgcacaccaccaccagaatcggatgtactactgcgatatatgcgaagtgaggtgcagcagcgagaagatgatggcgtcgcatctcgccgggaagaggcacagggagcggcacaactccattttcatgtaa</cdnaseq>

Protein Sequence

<aaseq>MEFPRRGQSSHPADADDDDRRRLRFPDSTPPSGREARPAPAQGD AVTAALGRRREELLWELHKTKIHREMLLCQLVETERAMAARLAAARGHPATPPLPWPQ GDLLPAREYAWRSTPWEEQANANANAHAHGALSAPRSGDEEITPWWRRSPSAVTPPVY PHVERSPSPPIARGWPADDDERQERGEPSGSPAMAPPVRHAPHVEQSTPVPIKSPAAE AVCMPSGSPAMAPPVQPAPHVEQSTPLPAKEPAAVAKVEADAIVQTAANADADQALLG KGATPGGQGCTGQKGEEGDFAIDGHGRQLLGEMNVSKSTEQPKPTESISGGHTDELVQ KRYQDNKPADQEIATLDKQKRVGSNDELTPERRSSGVKRQLASGTSLAKKPRSQGSSI TCSLCKVTMTSPRALVEHRASLLHRSNLAPLRSGNKATTEAAQPAEKKTEKPEASEWN SSAHHHQNRMYYCDICEVRCSSEKMMASHLAGKRHRERHNSIFM</aaseq>

Gene Sequence

<dnaseqindica>1942..2343#348..1333#1..97#atggagttcccccgccgcggccaatcctcccatcccgccgacgccgacgacgacgaccgccgccgcctccgcttccctgactccaccccgccgagcggtaaccaatcccaactcccaaaccctcggtattcccccaaattcgttgtgcgatttttttatttttatttttggctacgaatcgcattatctctgttgcaaatgatgatctggtggtagattggtagtgaatgatgctaagatttgttttcatgatgcagtagttgtaagcggggttagtgattttattttttattttttattttttattttttattttgattttgatggtgttgtgttcatgggcaaaggacgcgaagctaggccggctccggcgcagggggacgcggtgacggcggcgctggggcggcggagggaggagctgctgtgggagctccacaagacgaagatccaccgggagatgctcctgtgccagctggtcgagacggagcgcgccatggcggcgcgcctcgccgcggcccgcggccaccccgccacgccaccgctcccgtggccgcagggcgacctgctcccggcgcgggagtacgcgtggcggagcacgccgtgggaggagcaggcgaacgcgaacgcgaacgcgcacgcgcacggtgccctctcggcgccgcgctctggtgacgaggagatcaccccgtggtggcgccggagcccgtcggcagtgacacccccggtgtacccgcacgtggagcgctctccgtcgccgccgattgcgcggggatggccggccgacgatgacgagcggcaggaacgtggggagccatccgggtcgccggcgatggctcctccggtgcggcatgcacctcatgtcgaacagtccacaccagtgccgatcaagtcgcctgcggcggaggccgtttgtatgccatctgggtcaccggcgatggctcctccagtgcagcctgctcctcatgtcgagcagtccacaccattgccggccaaggagcctgcggcggtggcgaaggtggaggcagatgccattgtccagactgcggccaatgctgatgccgaccaggcgttgctcggcaagggggcgacaccaggagggcaaggttgcactggtcagaagggtgaggaaggtgatttcgccatcgacggccatggcaggcagctgttgggtgagatgaatgtaagcaagagcaccgagcagccaaaacctacagaatccatctctggaggccacaccgatgaacttgtccagaagcgttatcaagataataagccggcagatcaggagattgcaacattggacaagcagaagcgagtaggttccaatgatgaggtgattcgcttccgttactgttgttccccagtttttgctgccttttcatgtttacctatcaagaatgctgttcagattatgtttgcatgtgcccatactccatattgccatactgtgccacacttgtacagtgtacacttgcgctatatatttctttgtatcgacctttcaccagcatcttagcttgtttacaaatccataggcacttataggaatcaaggcccatttatgtgggattttagcttacaatatcaagttcaagaatgatctactagcattttacttgcagatcaggaattgtgtgtggagagctagaaaaactatatcagttttcgttgtgtttacttgtacgggcagattgaggtaagcaaccgaacaggtggaaatttaaaggtgtaggataaaatgtctattcaaaatcagcaagtttcatctttaatgttgcagtgtacaatttatagtagtattagtatatatttagttagttaaactgtaggattaccatcgttcacacatctggccttatttatcactttacctatctgagataagatatttgagatgatactgttgtgttgatgctctataacaaacttgctctggaacagcttacaccagaaaggagatcctctggtgtgaagaggcagctggcttcaggaacctcactggcaaagaagccgaggtcccaggggagctccatcacttgctccctctgcaaggtcaccatgacttctcccagggcgctggttgagcaccgggcatccctcctgcaccggtctaacctcgcgccattgcgatcggggaacaaggccaccactgaagctgcgcagcccgcggagaagaagaccgagaagccagaggcatctgaatggaacagcagtgcacaccaccaccagaatcggatgtactactgcgatatatgcgaagtgaggtgcagcagcgagaagatgatggcgtcgcatctcgccgggaagaggcacagggagcggcacaactccattttcatgtaa</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0421800, RefSeq:Os09g0421800