Os08g0332700

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Revision as of 12:56, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0332700| Description = Pentatricopeptide repeat containing protein| Version = NM_001068104.1 GI:115475945 GeneID:4345298| Length = 7076 bp|...")
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Gene Name

Os08g0332700

Description

Pentatricopeptide repeat containing protein

Version

NM_001068104.1 GI:115475945 GeneID:4345298

Length

7076 bp

Definition

Oryza sativa Japonica Group Os08g0332700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:14812943..14820018

Sequence Coding Region

14814176..14814265,14814349..14814402,14814485..14814556,14814640..14814727,14814887..14814954
,14815048..14815155,14815906..14816325,14817324..14817408,14818315..14818394
,14818583..14818660,14819321..14819460,14819571..14819985

Expression

GEO Profiles:Os08g0332700

Genome Context

<gbrowseImage1> name=NC_008401:14812943..14820018 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:14812943..14820018 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgctcgccctcctctccccctcatcagcgagtgcccaccgtctgccgcgccccatcagctccccgccgctcgggcgcgccgcctcggccaccagcatcggttcctccttcttccccctctgctcctcccctccgtcctccggctcttgctccttgcggagggccagctccgcgggcggcgcaagcgagccagaagcgtcgggggccacctccctcgacgccgacttgctcaggcgtgtcgccggcgccgcggacgccggcgaggcgctggacatcgtcgcggagtcggcgggaggcacgggcggtctggacgcgtccgactgtaacgcgatcgtcgcggcggcgcttgaccggggcaacgtggagctagcgctctcggtgttcgaggcgatgcgatccggctttgcacgagctggggcctggaggtgggcgaggccagacgtgcggacgtacgcattgcttgtccagcgattggcagctgctctgcgtgtttctgatgctcttaggataatcgattatgtatctcgcgcaggcatttcttcggcagaggaggtcccatttgggatgattattcgctgtccaagctgcatggtagcagtcgcagttgcacagccccagcatggaactcagactgtttcttgttcaaaatgccgatatcagtacgaactattttctggagatatcatgagcatcgagtctgaagaagttagcatggacatttcagctttggacaaggcattgcgatttataaatgtgataaaagacggtcttccagctgctgtgcactctattgtgattcgcacaccttcaggaacagcccgtacccatagatttgctacgcagactgtagaactgcctgctcaagaaggagaaagagtgaccatttccttggctgccccatcaaatgtttatcgtgaaatgggtccccttaagatttctgcacgctcacaagggtttagaccaggagaacccatgtctctcaccaatcacatcaacagacaagtctcaagattgctaagagctccatcaaagaacgagggaccattcgtctttaatccatatttgttggtcggtgctcttgctcttcttgcctctggagatgctgcttctgcattcatcgacccaagcctccctagatttattacagcaactgcttttgcatcagctgctgttggaacagcactaaatcaagtgatcctgccagagattcgaaagcttccacaaaagacagtagatataattgctgttcggcagcaacttttatctcagtacgacatgcttcagactcgtctaaaggatctgaaacaactttccgaaaaggaggtgtggatgctggcaagaatgtctcaactagagaacaagatattagcagtaggtgaaccatcatatcgtgctcgtcgaggtagagtgaagagggtacttgaaagcttggaaagtacactcctggcaaagattgagctgatggaaagttatgcaaaattgtgttctatgattgaaattgaagttgagatggactcagatgttattgttgctgaagcagcaagtagtgcagaaaggatatcagaacaaatacagcaactaatggagattgatagtcttgaagagcaatggcgtatacaagctgaggctaatgacgaagcagaaaggctgcttaattcagattcttcagaaacattttccgctgagcatgtataa</cdnaseq>

Protein Sequence

<aaseq>MALALLSPSSASAHRLPRPISSPPLGRAASATSIGSSFFPLCSS PPSSGSCSLRRASSAGGASEPEASGATSLDADLLRRVAGAADAGEALDIVAESAGGTG GLDASDCNAIVAAALDRGNVELALSVFEAMRSGFARAGAWRWARPDVRTYALLVQRLA AALRVSDALRIIDYVSRAGISSAEEVPFGMIIRCPSCMVAVAVAQPQHGTQTVSCSKC RYQYELFSGDIMSIESEEVSMDISALDKALRFINVIKDGLPAAVHSIVIRTPSGTART HRFATQTVELPAQEGERVTISLAAPSNVYREMGPLKISARSQGFRPGEPMSLTNHINR QVSRLLRAPSKNEGPFVFNPYLLVGALALLASGDAASAFIDPSLPRFITATAFASAAV GTALNQVILPEIRKLPQKTVDIIAVRQQLLSQYDMLQTRLKDLKQLSEKEVWMLARMS QLENKILAVGEPSYRARRGRVKRVLESLESTLLAKIELMESYAKLCSMIEIEVEMDSD VIVAEAASSAERISEQIQQLMEIDSLEEQWRIQAEANDEAERLLNSDSSETFSAEHV</aaseq>

Gene Sequence

<dnaseqindica>5754..5843#5617..5670#5463..5534#5292..5379#5065..5132#4864..4971#3694..4113#2611..2695#1625..1704#1359..1436#559..698#34..448#gacggtttgcccgtgagacgacgcgcgtcggccatggcgctcgccctcctctccccctcatcagcgagtgcccaccgtctgccgcgccccatcagctccccgccgctcgggcgcgccgcctcggccaccagcatcggttcctccttcttccccctctgctcctcccctccgtcctccggctcttgctccttgcggagggccagctccgcgggcggcgcaagcgagccagaagcgtcgggggccacctccctcgacgccgacttgctcaggcgtgtcgccggcgccgcggacgccggcgaggcgctggacatcgtcgcggagtcggcgggaggcacgggcggtctggacgcgtccgactgtaacgcgatcgtcgcggcggcgcttgaccggggcaacgtggagctagcgctctcggtgttcgaggcgatgcgatccggctttgcacgaggtgagggcatcgtatcactccttacgttttttcttttatcacgaaatgtagtgaattatgttttggattgagcgtactgagtccctgtggtgtggagtgccggcttgcagctggggcctggaggtgggcgaggccagacgtgcggacgtacgcattgcttgtccagcgattggcagctgctctgcgtgtttctgatgctcttaggataatcgattatgtatctcgcgcaggcatttcttcggcagaggaggtgagctttggcgtcgcagactagcatgtctgacgatgtgtatggtgctttgctgtttggtttgcatgcatgatgtttggatgttttagtggcatttgacaaatgatggaagctttttattcttgctttaaaaccttgatctgcaaacatgatttgtcacctaccggtacctcatcatttgtccaattactggtttcatttgtccaaggcaattcaagcttaattctaactagaaccgaatttgcagaggaatagtactaaacgtagatttctggagataggtaagtacaatcagttcatctacggaaatcctatttattatcaaaacaattagtgcaaaaggtcccaacaaggatagtcttgccatagcaatatcagtgcccctccaacgaaactcccttttggtttgatgtaacatataactttgaataatctagtcccattaatatccacaagcctggcaacaatccttatggttctgatcctgtctcaaagtattgataattctggtgcatcatactttaattttaaaaatttacataagagtgtcttgttgaatggaagtatatttgatgtagagaaaacttgagacacttctaaaggaaaacacagtgaatgaatgtcactacacttctaaatgatagattttacttgttacaggtcccatttgggatgattattcgctgtccaagctgcatggtagcagtcgcagttgcacagccccagcatggaactcaggtttgatgctgtacaagtatcttgtacctctaatctaattgtttaagctactcacttagctcgcatgatgcgatttatgaaacaaaattttacagtttgagcaaatttttagagatgacatcttaggaaaatatagattatttttaatgctgtaatggaaatcttagcattattttattactttacagactgtttcttgttcaaaatgccgatatcagtacgaactattttctggagatatcatgagcatcgagtctgaagaagttaggttagttcttggagcagttgcttggagttgtaaactgtcaatgctatgccatgatcttattcttttttcggttatatttgtagctatggattatggtgttgtttctagtaacttttggagcaatgttcttctaaaacaggtgtcctgccattaactgtggagggactccagtactaacttattttgttagaacttagaagatactccctccgttccattttaagtgcagttgtgagtttccgtgtccaacatttgacagcccgtcttataaaaaaaataaaaataagtcacgcataaagtactattcatattttatcatctaataacaacaaaaatactaatcataaaaaaaatttcagataagacaaacaatcaaacgttggacatggaaatccataactgcacttaaaatgggatggagggagtgacatctaaaaagtaaacattagaacaattaaaataattgatatatcagttagctttgactaattagccatgtctgtgatctcatcgttcgacttatactttctaatgtttcctttagatccagtggtacgattggctattatataggtctatgaactgcttatcctgagtgcttaggtattactctgcagattattgggtttctgtgatgtcaaaaagatttatacataatttattttagtgtttgataggtacacattgtccttctgtataactctctcacagaaatggtttattacattccaatgattatgcaactttgtactattttgtagtttatctgaagtaacttgattgatattgttttcatctgttatatcagaagatatttttgcacacctctattactttctcaatggttccatatatgacactgcttctaatattacttctctaaggatctcctcctgccgaacgcagcatggacatttcagctttggacaaggcattgcgatttataaatgtgataaaagacggtcttccagctgctgtgcactctattgtggtagtttccctttcaaaaaccgcacaatagatcttaactgtgccatcatttatttcaaagatctttacttttcaaatttttgaataaatcatcgttgctcttgatggatatcaagatatgaagatgcctcacattaaactagatgtactccatataatagaactgaaaggtaaaactctccctgttttctgttcaacaattgaggtaaaaaaatgttcctctttatgacaagtaggataactgcttgttcatcaatggtagaagggaattacacacatggacatgtttatcatcttagaggttattcttgcactaccagatgccatcacgccaagcagtgtatccatatgtgattacagctgccttccttaaaaaaatcttttgttgtactttttccaaatttcccagagtttaagagtatgatgcttcaggtcttggcaaccaagaagatgcttccccatgcaccatgtgaggcagaagtgttttttcatagaagttttttgaaagtaaacatgatatattttcacaaaatctgtggaaaactccaaaaatgaccaagcgttatcacatgtttggtttgaaccttggccccacattagcagcatgtatagtattttgccaaaattctgggaacaagtcgaacacttgctaactgaggtcaacacattcacattttagtttgaatatttggcaactgttgacttaggaccaaacagtcatcgagaattcttcatgtgtttctttccaaatatcgttcaatccattaatgctaaatttgatcaccaacatttctctgtcatttctcactccccccttaagatagttgggccagggattggctatccaaattttcctctagagtgctccaacaaaacattccacgacgaaattcagctgaatctattttttgtgatatcacacagttcttataatctgttgacaatgttgttcagaacatgagccatattcatgtaaattgtaagttatttattttgcagattcgcacaccttcaggaacagcccgtacccatagatttgctacgcagactgtagaactgcctgctcaagaaggagaaagagtgaccatttccttggctgccccatcaaatgtttatcgtgaaatgggtccccttaagatttctgcacgctcacaagggtttagaccaggagaacccatgtctctcaccaatcacatcaacagacaagtctcaagattgctaagagctccatcaaagaacgagggaccattcgtctttaatccatatttgttggtcggtgctcttgctcttcttgcctctggagatgctgcttctgcattcatcgacccaagcctccctagatttattacagcaactgcttttgcatcagctgctgttggaacagcactaaatcaagtgatcctgccagagattcgaaaggtaagtaaactcaaggattagcattcttcactaggaggaaacttgaaaactatgggcaggtagtcggaatgctaatagggtcatgtaataccaacgtatggtgctggagtcttgtaccaacaatagatcatgcaagcaactgtctatagcctgctctgttttgcttccttgttcgatcaagcttaccctatggcatgccattacatagctagagtatctaatttactttgtttctcttcaatcatactcccaatggaaagacttggctgtgtatatccaattgtggatatagaggctggatttctatccattatctacaaaaaatattgatgagagtactagcatttatatagcaatggcaaatcaggaagaaaagagacaaaggttcctaaaaaatatttttggtaagagttgagaaatctaaaatgtcttatatattggataagagggactataatttcaaaaatatttttttatcagtacttttttagagaaacctagtgccttatacttccatagttaaaaggacatgctattttcaaatttgcaaagccaacaagatgcactttgaccacaaaattttatcattgtgcattttataaaagtatttttttcacatgtttactcaattttttatatatccaaatattcatattttagacaatatcttattatcttattagtagtttttggttagaagctacgttgtccattatattctctctgacctaaattcgatgttattttcagcttccacaaaagacagtagatataattgctgttcggcagcaacttttatctcagtacgacatgcttcagactcgtctaaaggatctgaaacaactttccgaaaaggaggttaaaatctgtaatctctaattagtttattttctgctaaaagtaaagtcctgaaaatcatgaactcctaaactcctaaatttattttcaaaggtgtggatgctggcaagaatgtctcaactagagaacaagatattagcagtaggtgaaccatcatatcggtaatttcatacagttccaacagtttattttattgttctagtttaactttatctattcacaaatatacttatataacatggttgtttgttagaacttgttctactacagagtttttttctttttgaaaataatgaagttttgatcaaacttatttccagtgctcgtcgaggtagagtgaagagggtacttgaaagcttggaaagtacactcctggcaaagattgagctgatggaaagttatgcaaaagtaatagagcaaattttatatatggtatgtataactcacgtttattatagctaaatagtgaaatgttggatatgccactgcagttgtgttctatgattgaaattgaagttgagatggactcagatgttattgttgctgaagcagcaagtagtgcagtaagttcaagttatttagctatcctatttatgcatcatgtggatgaagtatgattactaataatcagtgtcctgattccaggaaaggatatcagaacaaatacagcaactaatggagattgatagtcttgaagaggcaagtatatcctatgttcatcagcttacattcaacagaaaatgtttcgtaaggactaacagttgcttctaatacttatttagcaatggcgtatacaagctgaggctaatgacgaagcagaaaggctgcttaattcagattcttcagaaacattttccgctgagcatgtataatgagttattttgggtaatatgcaagtacctctgttttcttatgccatgtttctttgtgtaaaatccttttcttcccttataaactagaacaaaatcgtaataacatgtgaagggagatagttttggttcagccatgtagatgatgaacagatcactgtgttacaatacaatatgacagaagtaaacaaaccctttttaaattcctgcaacgcatgcacatccattgcatgttgagtgcagattagaacaagcttacagttggacatgaaatccacacagtattgtacataaaggacataggaatgtggaattcctgaggtacttgtggtatatcagatattctgatcacgtgtttgctaattgcattgcgagttgcaacatatgttcttggagctaccaaaagtactgattcaggcatctaaaccagtccatataactacttcctacattaaaggccattgcgttgaatggtgggacagtttcatgtaatgtattttgcaaattgaattgcagcacattttcttgtgagctgaaagagtttaggaggatgtttgtgaagcaacaatggaaccatgacctataacaattcattgttaccttgctttgctggtttatacatattttagagaagtcttcctatacccgtatatccacactctaattacagtttgttttaatccaaatattgagaaggtattcatcagcatgccaatcttgttttccttactttgttcttggttcttttgagatgttttatggcactaaaacgattgtgtcggttcttttcatgtattgtggacttgtggcactaaaatgatagtgtttgttcttttcagatattttgtggcactaaaatgatcgatgtctccatcaacttgctcttgtcaacagtgtactagaaggaaagctggatggatagtcaggcaattgcacagagataccatcagagtgcaggtcaccaatgtaaactcgtttcgggaacaccatcgtagcaaatccaaacgctcaggttattgggcgaacctcccttagccaaattgcctaccttattaagaataaggtacccgattgcttccgattgctcgaatactatggtatccttgcgcccaatactggtttgtttgcttatgcattcattgccaagtatatattgtctagatactgtagaaagttttgcccattttggttctgaatgtcttacatttcaaagtcctgatcaaatttttatggacc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0332700, RefSeq:Os08g0332700