Os08g0337300

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Revision as of 12:57, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0337300| Description = Zinc finger, FYVE/PHD-type domain containing protein| Version = NM_001068115.1 GI:115475967 GeneID:4345309| Length =...")
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Gene Name

Os08g0337300

Description

Zinc finger, FYVE/PHD-type domain containing protein

Version

NM_001068115.1 GI:115475967 GeneID:4345309

Length

5797 bp

Definition

Oryza sativa Japonica Group Os08g0337300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:15203017..15208813

Sequence Coding Region

15203425..15203834,15203925..15204021,15204692..15204739,15204830..15205053,15206614..15206710
,15206803..15206898,15207544..15207791,15207879..15207962,15208034..15208487

Expression

GEO Profiles:Os08g0337300

Genome Context

<gbrowseImage1> name=NC_008401:15203017..15208813 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:15203017..15208813 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgtcatcggacgacgaccttgagccgcagctcaaggcggtggagaattactacttcgttgacgacaacgatgtgccggtatccttcgatgtcctgccgttccagttcgatgcggccgagggggtcgcgtcgttcaagaaggatgtgtacctgcgggggttcaccgacggcggcctccagaaagtctacaagcaggtggttgcctggaagctagtcctagatggagactcgcctgagatcgcggtgctttcgacggagggcagttggattgccctgctgaagccgaggcctagctacgaggagaccatccggtctgtactgatcactgtcgaaatgcttcacttcgtccgaaggaggccaacggattccgagaaagacatgtgggatcacctctatggggtttttgagagatttgtggttaggcccttagaagatgactttgctaatcatcagaatttaataaaactctttgctcagagggacccagatttagcaaattcacaggttttgcaagtcttcatcaaagacaagattatggaaaagaccaatgaggttggttcaaataatctggataataaacgagagccagacattaaacaagagccagacattaaacaagagccggttgctgctggtgatgaaatggaggagatagttgaagaaggcattccagatgcaccaagcaatgatgatgatgatgatgaagaggatgaggaggatggagatttgtttgattcagtttgtgctatctgtgataatggaggggagctgttatgctgtgaaggtccgtgtatgaggtccttccatgcaaaaataagagatggtgaagattcttactgtgcaaccctagggtacacaaaggcagaagtcaaggcactaaaaaattttgtgtgcaagaattgtgaccataagcagcaccaatgctttgtctgtggagagttggagccttcggatgggccaaatgccaaggtatttctctgtaataatgcaacctgtgggcatttctaccacccaagatgtgttgcgcaattgcttcatcctaacagcagaaatgaggcttccgaaatggagaaaaagattatggctgggttttcatttacatgccctgtacattggtgctttcattgtaaaggtctagaagacaggactcaagaaccactgcaatttgctgtttgcagacgctgcccaagatcgtatcatagaaaatgcttgccaagggaaatttcctttgaagatattaacacgcagggcatcataacccgtgcatgggagctttcaaaaagaattctgatctactgcttggaccatgaaatagaccttgatattggaacaccacccagagaccatataaagtttcctcatgttgaaaaatcagcttattctgcaaagaagaaagtcaaagaattagctgagaagaaaagacggatttgtgatgattcatatgtttctgaacctttacagaagcgcgcaaagttaaatgagaagtttaatgcaaaaggtgacaaatctaaaaaagctggtgtgaaaagtgaatttgaggaagttcttgaatctgaaaagaaaaaaacaaggagcctgaaaaagagaacacagcctgaagaacctttggttgagtgtgctgctgctgctgctgcaaacaatgcaaatcgacctgtgaaagaacgagaaaaagaattagggacttcatcgttggatatggggaagatacctcttagctctttccctattgtggatagtgaaacggagaagaggtga</cdnaseq>

Protein Sequence

<aaseq>MMSSDDDLEPQLKAVENYYFVDDNDVPVSFDVLPFQFDAAEGVA SFKKDVYLRGFTDGGLQKVYKQVVAWKLVLDGDSPEIAVLSTEGSWIALLKPRPSYEE TIRSVLITVEMLHFVRRRPTDSEKDMWDHLYGVFERFVVRPLEDDFANHQNLIKLFAQ RDPDLANSQVLQVFIKDKIMEKTNEVGSNNLDNKREPDIKQEPDIKQEPVAAGDEMEE IVEEGIPDAPSNDDDDDEEDEEDGDLFDSVCAICDNGGELLCCEGPCMRSFHAKIRDG EDSYCATLGYTKAEVKALKNFVCKNCDHKQHQCFVCGELEPSDGPNAKVFLCNNATCG HFYHPRCVAQLLHPNSRNEASEMEKKIMAGFSFTCPVHWCFHCKGLEDRTQEPLQFAV CRRCPRSYHRKCLPREISFEDINTQGIITRAWELSKRILIYCLDHEIDLDIGTPPRDH IKFPHVEKSAYSAKKKVKELAEKKRRICDDSYVSEPLQKRAKLNEKFNAKGDKSKKAG VKSEFEEVLESEKKKTRSLKKRTQPEEPLVECAAAAAANNANRPVKEREKELGTSSLD MGKIPLSSFPIVDSETEKR</aaseq>

Gene Sequence

<dnaseqindica>409..818#909..1005#1676..1723#1814..2037#3598..3694#3787..3882#4528..4775#4863..4946#5018..5471#gagtcgaatcgaaaccgaagccagaatctctctagggttcgttcccttctcgcgatcctcccccacctctcacctcccgcgccccagtctccgtccgccggttaatctcgatccctcccccaccgcgggtgtgccctcctcgctctctttttttagggatttttttctagggttttggtagaattttgggtcttcagttgtttctagtccccttcaggcgatttagttgggtatccttttctccgtggaattccccatgtggtttcttcttcgatgggaatcctctgctttgcttggacgcataataagatgattcgtttatgaatcttgtgcaatgcgcctgatttttcatttctctttgtttttttttgcccccctcagatcgcggattgggatactgcggcgaccatgatgtcatcggacgacgaccttgagccgcagctcaaggcggtggagaattactacttcgttgacgacaacgatgtgccggtatccttcgatgtcctgccgttccagttcgatgcggccgagggggtcgcgtcgttcaagaaggatgtgtacctgcgggggttcaccgacggcggcctccagaaagtctacaagcaggtggttgcctggaagctagtcctagatggagactcgcctgagatcgcggtgctttcgacggagggcagttggattgccctgctgaagccgaggcctagctacgaggagaccatccggtctgtactgatcactgtcgaaatgcttcacttcgtccgaaggaggccaacggattccgagaaagacatgtgggatcacctctatggggtttttgagtatgtgctaaatacattatttactttatttgtttttgggtagtcataattaggtcctaatgaccttactagtgctttcttgcatcacaggagatttgtggttaggcccttagaagatgactttgctaatcatcagaatttaataaaactctttgctcagagggacccagatttagcaaattcacaggtatgcgattcttcaaattcttattgtgggctacttggagttcaggtgaatttttgtgttccataggatttagtccaaaatgtgtactggtaaattctgtcatattgcatacagacaaattgtgtcatgtcccctcataacttcttgaagtatttcccatacaatgggttccttgtcccaaattttccttttagcaatcctaacattagaagtagcacgtttcgtgattaaatcgcgaattacaaatagctgaaaaagctttattgctatctctagaggtaaaacccacattgatgtaataatgaaagtgaaggacccacaacaatgacaacgccccgagtaaagatgacctgatttatattgcaggatttacagcttttgctgtaccatcgtaataggtcagcgtcagtgtcaaagttatcttttactgtccatgccgccccccttgtacttatcagacatgctgttcgcttttagcactcccgcttgtttttgcattctgtatacttattattttattgcatgcctgcacccatagcacttgtttcttgtactgcttatttcatccttgcaccatttaccaattttacggttttagcaacgtacatctaacatctcttaaaattctttatttattgctcacaagattatctttcataatttctggcaggttttgcaagtcttcatcaaagacaagattatggaaaagaccaatgaggtagctcaggtttctccttcctaatactttagtggcctttaaagtatttatttagtctctctattcacttttcttttgattttcaactaggttggttcaaataatctggataataaacgagagccagacattaaacaagagccagacattaaacaagagccggttgctgctggtgatgaaatggaggagatagttgaagaaggcattccagatgcaccaagcaatgatgatgatgatgatgaagaggatgaggaggatggagatttgtttgattcagtttgtgctatctgtgataatggaggggagctgttatggtatgcgctcttctactttccttaagtgccatcaagtattttcatgacctacatgcatattacagaaacttaggaattagcaggacttctaaggatgatacgtatgaaactttttagtaactaaatctacttcgtgacaaaatataaattaatagttgtacatcatatcctttttatttcttgtttcataggtgcacttaacatcgctctacgtcgaggatacacaactttgatgcataacatttttacttgtggtagtatttgttgtgaatcactgtatagctaatttcaaaacaaaccccagctgggcaagcatttatagatgttcatgtaaagatctagttgtctatgctttttatcagtacctgattatctgcggaggagtttccagacattgcagggtgctagtatgtaaattctgtcatttattgaaacatgttcctttctacacttgggagataaatctgttaggttgattcagtatttccatgcgttaagtacaaaaaaaaaaagacctacagtttggttgttcttggaaactgacacaagtatcaattggccaaggatagattggcactagaaagtacaaatgcttgtgttatgagtaaagatcaggtaatctgtactttctgttcaggccgtgttatggttatcatggtttttgctttgaggccttatgggcttatgtgcggaccatgttgctgcagtttccacaaaagaaacagaaaaagaaataaaagaaggtggaagtggcaaataagagaagataaaaacaaaccagtggcaaacaagggaacattaattttctgatggaaaacaagggattgggttaatgttcaatactccctccgtcccataatataagggattttgggtggatgtgacatatcctagtacaatcaatctggacatacggtatgtccagatttattgtactatcatgtgtcacatccacccaaaatcccttatattatatgacggagggagtagtaaataaggaattttttccatgattggaggagcaagggtgctataccttacaaacattttgtagctttggtcaagatttggccttcacttggtaagtttccaactttggtaaggttgcactgaagagtgcttcctttccaaaacttggccagttcatggactaagcaagctttggtaattccaattttccataagatatcataatgggaattctatttatgtacatgcacaattgtaagcatcgaagtgttttgtaattttgttcgaggactttaaaacagattgaagatgtgttgttttgtttgaatttgaatctttataaatcttcaagcacatttgaaatttgatgatggcaatagagcatgaaactgcatgtatatctaaacagagttattaacccacatgatatggaaaaacaaaattcttagcaaatgattcctgtttttatttttccctagaacagatggtgtatttttgttggataccatgaacatggaatattactatgttcctacatttttcatcagttttctgatctcaataatgtattcttgtgctggtttgttgtagctgtgaaggtccgtgtatgaggtccttccatgcaaaaataagagatggtgaagattcttactgtgcaaccctagggtacacaaaggcagaagtcaaggtagttcggaactttacttttaaagagcactgatacttcattcttgctcttttttccagattgtaatgttatacttttctaatgttttctaggcactaaaaaattttgtgtgcaagaattgtgaccataagcagcaccaatgctttgtctgtggagagttggagccttcggatgggccaaatgccaaggtatttgacttcatgaaacaaaaccttgtggatgtatgacagacatccttcatacaaaaggacaacatcctttttcttaaaaaaaagaaagacagttccaacttacaatatgcatcactggagaataaaaatcgttcatataattcatagtttgtggtagactggtagttttgtgtcacccttagatttttagcaccaagaatcattacaggcattgattgatttgtatagatggattcattgtcgatacttgggaacaacagttagctgccttgtcttcaatcaaaacaggataggtatgaatgaaataagagtgggaaggttggtttgtagctataggtaaaatacactagttcaccaatttccaactggttgtacaaattcttatactgcttgtaaaagggaaaaaaagcatcttctagcctctgtattctcgtactgtcttcaataggaaatggtagtacgcattgtgacttgccatcttctagttgagctttttaaacttaatttaataaaactaaatgccattttaataaaactacaaaagcttttccatacaagctgtcaagttgttcattatgagtctatcttaatcctaagtcatttttttaattttaaaatgttgacgcttgcaaatttctttaggtatttctctgtaataatgcaacctgtgggcatttctaccacccaagatgtgttgcgcaattgcttcatcctaacagcagaaatgaggcttccgaaatggagaaaaagattatggctgggttttcatttacatgccctgtacattggtgctttcattgtaaaggtctagaagacaggactcaagaaccactgcaatttgctgtttgcagacgctgcccaagatcgtatcatagaaaatgcttgccaaggttttattttttacatttttagttccctgtctgagttcattgcatatgacattccttggtcttctcactcctgaaattattttacagggaaatttcctttgaagatattaacacgcagggcatcataacccgtgcatgggagctttcaaaaagaattctgatctactgcttgtatgtaaactttcttgtgatatttctgttctgattgcatggagaaactaacatctgattaactgttacagggaccatgaaatagaccttgatattggaacaccacccagagaccatataaagtttcctcatgttgaaaaatcagcttattctgcaaagaagaaagtcaaagaattagctgagaagaaaagacggatttgtgatgattcatatgtttctgaacctttacagaagcgcgcaaagttaaatgagaagtttaatgcaaaaggtgacaaatctaaaaaagctggtgtgaaaagtgaatttgaggaagttcttgaatctgaaaagaaaaaaacaaggagcctgaaaaagagaacacagcctgaagaacctttggttgagtgtgctgctgctgctgctgcaaacaatgcaaatcgacctgtgaaagaacgagaaaaagaattagggacttcatcgttggatatggggaagatacctcttagctctttccctattgtggatagtgaaacggagaagaggtgagtcagttggatatattgtttcatgtaaacagactataacagcgagggcaacagaatatttttcttctcctcaaggcaaatatgttagtggttggtgatggatgctatttcgtttagagtataattgaacatagctcatcaagccaatccttctttccttctatgtctaccttctacatcctactaaatccctgagcaaaacccaggccaagcagggctgatgtaaaataggcataaagttggatttgctaagttttgtctactttcgctagacagcctatcgtttacgcattctccattaaaaaaagtgaagtcacattctccatt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0337300, RefSeq:Os08g0337300