Os08g0372900

From RiceWiki
Revision as of 12:58, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0372900| Description = Similar to Rhodopsin (Fragment)| Version = NM_001068196.1 GI:115476129 GeneID:4345408| Length = 4088 bp| Definition...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0372900

Description

Similar to Rhodopsin (Fragment)

Version

NM_001068196.1 GI:115476129 GeneID:4345408

Length

4088 bp

Definition

Oryza sativa Japonica Group Os08g0372900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:17527600..17531687

Sequence Coding Region

17527740..17528125,17529574..17529858,17531158..17531653

Expression

GEO Profiles:Os08g0372900

Genome Context

<gbrowseImage1> name=NC_008401:17527600..17531687 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:17527600..17531687 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcaacaacaagctcgtcaaaaaccgccacgtgccctctctgccacgccgacgtgctgctgccacggcggcggtcagccggctcctcgacgcacagaagccacgacctcgacgacggccccgctccgccgtcgccggagtccagctgccgcagcaacgccgcggtgtgcgggtgcgcccgctgccggcgccctgatctgatcagtcccggaaccggcatgcggatgaggaacagattcggcgatggccccaacaggatatcagcccagagtggagcatggctgtgccgagagcgcacggcggagacttgccggagcacaagtagccggtccggccgctaccggcgcctgcagcctgcagcggtcgccggaacacgacgcgccgaactcataaagcggctgcaagagctctgccacccagcaaataaccttccaaattgttctgcttcttggcaaccacagcgacagcggcagaaaacaattgatcgaattccagatagcctagattgtggggtgacaatggaaaggggcaagaacaagcgtgatggaagtgacaatgggctcatcttctctaacctaatgcacggtgttgctgccggcatctatgggtatcctcctcaccagggatacactcaggctcagagctacctactgctgccggaagcatatccacctcctccgtggacataccctctttctagtgcttaccctcctcaacctgttggttacccttcaggtggctaccctcctgcagtctactctgactcgtatctgcaccaaggtagcagagttgcgcgggagcaatgccctctatcatattccaataatgctgtcacttgcagggaggatgggcaaatgaactgtgaaaatggaacagtaaatatggagaaaagtgcaatgtcctcaaataagatggctactagtctactaaagagttgcggcaatgtgatgccatgcagaaatatggagagaagtggcccagccatgtataaggtggacatgcgcggcagtacgaagcaattctctatgggcagcaagatgatgatgtgtctgattgtgtttggatgtctgatagctgccttggatatgtttagaaatgttgcacaaaaacagatgttttctgtcgttagtttactttcttttgtagtcgcgacctatgtctgctag</cdnaseq>

Protein Sequence

<aaseq>MSTTSSSKTATCPLCHADVLLPRRRSAGSSTHRSHDLDDGPAPP SPESSCRSNAAVCGCARCRRPDLISPGTGMRMRNRFGDGPNRISAQSGAWLCRERTAE TCRSTSSRSGRYRRLQPAAVAGTRRAELIKRLQELCHPANNLPNCSASWQPQRQRQKT IDRIPDSLDCGVTMERGKNKRDGSDNGLIFSNLMHGVAAGIYGYPPHQGYTQAQSYLL LPEAYPPPPWTYPLSSAYPPQPVGYPSGGYPPAVYSDSYLHQGSRVAREQCPLSYSNN AVTCREDGQMNCENGTVNMEKSAMSSNKMATSLLKSCGNVMPCRNMERSGPAMYKVDM RGSTKQFSMGSKMMMCLIVFGCLIAALDMFRNVAQKQMFSVVSLLSFVVATYVC</aaseq>

Gene Sequence

<dnaseqindica>3563..3948#1830..2114#35..530#ggtcttttccggccgctcccggcgcccgccggccatgtcaacaacaagctcgtcaaaaaccgccacgtgccctctctgccacgccgacgtgctgctgccacggcggcggtcagccggctcctcgacgcacagaagccacgacctcgacgacggccccgctccgccgtcgccggagtccagctgccgcagcaacgccgcggtgtgcgggtgcgcccgctgccggcgccctgatctgatcagtcccggaaccggcatgcggatgaggaacagattcggcgatggccccaacaggatatcagcccagagtggagcatggctgtgccgagagcgcacggcggagacttgccggagcacaagtagccggtccggccgctaccggcgcctgcagcctgcagcggtcgccggaacacgacgcgccgaactcataaagcggctgcaagagctctgccacccagcaaataaccttccaaattgttctgcttcttggcaaccacagcgacagcggcagaaaacaattgatcgaattccaggtaattgcgcgctttaaatttttcttgtttttgttttcagttttgatatttatcagatgctcgaggattattaggataagattgatttgtttagagtctttccttatatgtatatccccttcctcatcttttctactctctatatatatatccctcatgagactgaattcaatgcttaatatttatagtattcctctcttcttatactgttaaacatggtatcagagtgggacgatctagcgccgctcgaaagcttccgccccgctgcccgggggagcagcgatctcccaggggcagccaccgtttttctgattttgttaaactgttcggtttccactttaggtatagaatagtatttgtgggacgactgtacatggctgaaaaaaatagacaaattttgttgtgcaaattttatatgaactgcaaaataggaaactacagagggataaaattctataggtactgcaaaataggaagggaactagaaccacagttccaaaatttttagagctagtgacaactcttaggctatggctctgaaaattgcacgcagcatgaaagtttcagattgattgctagtataaatgctgttatcttgtatgtttacgccattggatccatcatatatagataatcatagtaaccttgtaagacaagtattcacatagatattgaatttgtggctattgctaatcatcatttgcattgtgaggtggttgaaaagagtgctgataatgttagaagttagcatcttatatggtctaaatgtcctgtttgatgcaaaagtaacagaaaattggttgagttactagagtatatttgaatgctgcatgctacctcctctatttaatttctcacacaataagattagatgttttggtgttttgaatagattcagcatggatgcattcatgcggttatccaaattcatatgaattaatactagtgaatctagactacgagatggagaggctaaaacatcttataatgtgtgaaatagaggaaatagatgtttagaactgtgtgcatttagatgaaatcattttcagtgcaaaacagaagatgcagtaacttaataaacaacccatcatataaagatatattttcttttagtttccttaagatattaaagcaataaattaattatcttctcaatcaagcttaagtgcaaaatatactccctacagccaaaaatctttgacgtacatcaaataaatctaaagtactactaaatcttgcttagcacaaaaaaccatggtctaaacaacagtgatggaccaacattttttttttgtgcagatagcctagattgtggggtgacaatggaaaggggcaagaacaagcgtgatggaagtgacaatgggctcatcttctctaacctaatgcacggtgttgctgccggcatctatgggtatcctcctcaccagggatacactcaggctcagagctacctactgctgccggaagcatatccacctcctccgtggacataccctctttctagtgcttaccctcctcaacctgttggttacccttcaggtggctaccctcctgcagtctactctgactcgtatctgcaccaaggtattaaactagattcttttatatactattaagatattgtactttgtataaacattgctgaaattcgctgataaaactaattaacctctattcactggagaaggtgctatcattttgcaaacaaaactaaagagtacaaaatcaaaaccaaagttcatgctattatagttgaaaacaaaaccaaaccgtacaaaagtacatactattagtaatgttagtagctaaccaaacaaacaaattcttaatttctaattaagaaaattaatattcctggatttcaagacaaaaaaatgaaacaaaatcctctagtgtgtcacaaaggttaaactaaagaatgtattacaaacataactgtgacacggctaggtagctgcccgtggttttgggaaatcgcttcatatatggtgcgctagttttcagaactgatctgtatttgtgcactgtttagctaacaaaactttgtattcttagtaccaaataaactaggtattactccctccgttaaaaataattatcatttcaaacgagtaaacggtctccaaaaagaactttgatcactatttttttattacagtatcatatctatagaaatgccaacaactatatatgattttcttgaagcacttcaattcgtgactatgagttggatgttattattttgatttcatctctctagaacttgtaaaaatatctatgcgggttggagcatgatttaaacttcattaattagtagtgcagccacaccatatatatatatatatatataatgtgcttgattatgtcgacgagttatatatgaaaggtatatatactagttaaagggttaattattggttttgtggattatcagttggcgttagtagtgacaattaagcttcagttcagtcgacatcaataattaatctcactcaggctctttcctcactcctagacatatggtcgattgtttttttttctgtacacccttaaatttgaaatgaactatgaaaagaattgattgatgttgtttagctaataaatcaataactgtatgggcagtacgcttaaggttgagtttgaatctacctcttcccatcttcgactccctagcttactcttcacgaactgttaagtgttgtttttttaaaaaaatctatatgaaagtagctataaaaatcatattaatttattttcaagttttttaagttaatacttaattaatcttgcacatattatacttaatgcaatgatcaactctctatacatattaatactaatgcaatgatcaactctctatacatattatagggaaaaaaattcaagcggtagcacctgtcttaaaccaacatgataaaaactgcagattgtctagcaccatgtagcaccatatatgtaaatcgatgaagcatggaaagaactgatcaactctcgcggcagaatctaaccgctgaaaattcgataatgtccaggtagcagagttgcgcgggagcaatgccctctatcatattccaataatgctgtcacttgcagggaggatgggcaaatgaactgtgaaaatggaacagtaaatatggagaaaagtgcaatgtcctcaaataagatggctactagtctactaaagagttgcggcaatgtgatgccatgcagaaatatggagagaagtggcccagccatgtataaggtggacatgcgcggcagtacgaagcaattctctatgggcagcaagatgatgatgtgtctgattgtgtttggatgtctgatagctgccttggatatgtttagaaatgttgcacaaaaacagatgttttctgtcgttagtttactttcttttgtagtcgcgacctatgtctgctaggagtctctacatgtaccgtaaaattgctctttgtgtaatgtgtacttcttcatcctgtaaaaatagaatcccaatcaaactatatatggtttgtctgtcgggctttcaatacaatctgagtgtcctctctttacctttgt</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0372900, RefSeq:Os08g0372900