Os08g0389500
| Gene Name |
Os08g0389500 |
|---|---|
| Description |
Reverse transcriptase, RNA-dependent DNA polymerase family protein |
| Version |
NM_001068253.1 GI:115476243 GeneID:4345470 |
| Length |
4829 bp |
| Definition |
Oryza sativa Japonica Group Os08g0389500, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 8:18502775..18507603 |
| Sequence Coding Region |
18503089..18507450 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008401:18502775..18507603 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008401:18502775..18507603 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgcggcactccgagccgcacggcgggcgttcgcacacgccgccgcgtcgtcgacgcctatcgatctcgccggagcccactcgtgggcgcggcgggccgaagatcatcgtcaggcgcacgatcaaggaggccaacgcgacgatccagtacccgacgctcacccgcaccaactacgacgaatgggcaatgttgatgcaggtgaacatggaggcagcaggcatctggtacgcggtcgagccgtaccccgacgaggaggtagagtaccgcgacgaccgtctcgctctggcggccattctccgctccgtcccatcggagatgctccccacgctccgtggcaagcgctcggcgcgagctgcgtgggacgcgatcaagacgatccgcgtcggcgtcgagcgcgtgcgcgagagcaaggcgcagcagctccggcgtgagttcgcggcgctgacctggaaggagggggagaccgccgaggacttctccgtgcgcatcaccggcctcgccaacaacctccgcacgcttggcgacaacatctccgacgccgacgtcgtccgcaagatgcttgacgtcgtccccgagcacctggaacagatcgccgtcgcggtcgagacactccttgacctgaacaccgtttcggtcgaggaggtgaccgggcggcttcgcgccgttgagcaacggcgtcacaggtcggcgcccgtcgtcaacaaccaggggcggctcctcctaacgcaggaggagtggatggcgaagctcaagaaccccggagcgtccggagagaaggggacccccagcgggtccggcggaggcggcaacaagcgtaccgggggatcgcgcaggcacgaccgcggcaaaggcggctctcgccaggctgccgggcctggagacggctcgaaccagcccaagaagacggacaagtgccgctactgcggcaagaagggccattgggctaaggaatgccggtcacggttgcgggacgaggcccatctggcccaaggcgaagaagaggaggagcccatgctgatggttgccacggcgcaagtcaacgccatctcgtcttcttccccgccgcgcttcacatcactgccggcgcttgaacagatccacctcgacgagagtaagctcttcgttcagctgggcggcgagcacggaggagaagccaccagatggatcctcgacacgggcgccaccaaccacatgacggggacgcgatctgccttctccgagctgaacaccggcatccgcggcacggtcaagttcggggacggctccgtcgtcggcattgaagggcgtggcaccgtcctcttcaagtgcaaggacggggaacatcaggcgctggagggagtgtaccatattccgcgcctcaccaccaacatcgtcagcctggggcagctcgacgaggagaagttcaagtggagctgtgaagatggagtcctcaagatctggaacaagcagcgtcgactactcgccaaggtggtgcgctcgccgaaccgcctctacgtcgtcaagctcaacatcgggaggccggtctgcctcgcggcacaagggggcgacatcgcctggcgttggcacgcaagattcggccacctcaacttccgcgcgctcgagaagcttggtcgcgccgtcatggtgcgcgggcttcccctgatcaaccatgttgatcaagtctgcgacagctgcctggtcgggaagcagcggcgcctgcccttcccgtctaaggccaagtaccgcgcgaaagaaaaactcgagctggtgcatggggacatctgtgggccggtgacgccggcgacgccaagcgggaacaagctgttccttctcctcgtcgacgatctgagccgctatatgtggctcatcctcctcagcagcaaggaccaagcatcggtggcaatcaagcgcttcctggcgtgcgcggaggcggaagccgggcggaagctgcgcactctgcgcactgaccgcggcggcgagttcacggcgcacgcgttcgcggagtactgcgccgagcacgggatccagaggcacctcaccgcgccgtacacaccccagcagaatggcgtggtcgagaggaggaaccagacggtgatggggatggccagaagcatgatgaaggcgaagtcactgccgggctggttttggggggaggcggtgaacaccgccgtgttcctcctgaaccgggctccaacgcagtgcgtcgacggcaagactccttttgaggtatggcatggtgtcaagcccccagtccattttctccgcacgttcggttgtgttgcacatgtgaagaacggcggccagcgactcgccaagctcgacgacaggagcatgcccatggtgtttgtgggctacgaagctggaaccaaggcataccgcttctataacccggtgtcgcggcgcgttcacgtgtcgcgcgacgccgtgttcgaggaggagcgaagctgggagtggggagccgagaagggagctggacctgacgacgacatcgagccgttcgtggtggagcacctcgccacgggaccaacggggcagggaggccctgtcgccgcgactccgaccgcgacacagcgctctacatcagcaccagctcccatggcgccgcctgcgacaccaagtcaagccggaacgcccacacacggggcggggcctcgtacaccggcttcagcctcttcaccggcaatcgagttcgcctctccgccgcagggggacctcgatctggacaacgaccacgacgacgatgtacctctccgcttccgcaccgttgacaaccttctcggggcatcctcgcctccgggtcttgcagaacgggaagtgacagaggggctcatggtggcgatcgaggacgaaccagcaacggctgaggaagccaagcaagtcaaggagtggcgtgaagcgatgatcgaggagatggcatcgatcgagcacaacaagacctggtctctggtggagctgccggcggggcaacgtgccatcggcctcaagtgggtcttcaagatcaagaaggacgagcacgggaacatcaccaagcacaaggcccgactcgtcgcaaaaggctatgtacaacgccaaggcatcgactatgaagaagttttcgcgccggtcgcaaggattgagtccgtgcgcgtgctcctggccgtggccgctcacaggtcatggtcagtgcaccacatggatgtgaaatcggcgtttctcaacggcgatctggcggaagaagtctacgtgcagcagccgcccggctttgtcgccgccgggcacgagcgcaaggtgctgaagctgcacaaggcgctttacggcctcaagcaggcgccacgcgcctggaactcgaagctcgacagcagcctgctcatgctcggtttcgcccggagcgagtgcgaacacgggctgtacacgcgcagcgacggcgagaagcggctggtggtgggaatctacgtcgacgatctcatcatcacaggaggctccaccgaggtgatcaacacattcaagacggagatgaagactctgttccgcatgagtgatctcggtgtactgtcctactacctcggaatcgaggtccgacaggggcggcgcggcatcgagcttctgcaggccgcctacgccaagaagatactggaaaaggcgggcatgggaacctgcaatccgtgcgcgacgccgatggaggcaaggttgaagctgtccaagcagagcacctcgccggcagtcgacgcgacggagtaccgcagtctgatcgggagtctgcggtacttgatgaacacacggccggacatggcgttcgccgtaggttacctgagcaggttcatggagaaccccaggcaggagcacttggcagccatgaagcacctgctccggtatgtggccggaacgatcgactacggcttggtgtacaccagcggcgacaccgagttcaacctcgtcggctacagcgacagcgacatggccggcgacatcgacgaccggaagagcaccagcggcatcatctacttcctcggcggcaaccctgtggcgtggcagtcgcagaaacagcgcgtggtggcgctgtcgtcgtgtgaagcagagtacatcgctggcgcagcagcagcgtgccagggcgtctggctcagacggctgctgcaggatgtggtgggcgtcagcgggcctccaccacaactcaagatggacaaccagtctgcaatcgccctcagcaagaatccggtacttcacgatcgatctaagcatattgatacaaagtttcattttcttcgtgagtgcgtggatagtggggcggtgcgcctggcgttcgtgagcacccaagcgcagctcgcggacatcatgacgaaggcgctcgggaggtccaagtttcaggagcttcgcgagctgatcggcgtcaccaagctcaagtga</cdnaseq> |
| Protein Sequence |
<aaseq>MSRHSEPHGGRSHTPPRRRRLSISPEPTRGRGGPKIIVRRTIKE ANATIQYPTLTRTNYDEWAMLMQVNMEAAGIWYAVEPYPDEEVEYRDDRLALAAILRS VPSEMLPTLRGKRSARAAWDAIKTIRVGVERVRESKAQQLRREFAALTWKEGETAEDF SVRITGLANNLRTLGDNISDADVVRKMLDVVPEHLEQIAVAVETLLDLNTVSVEEVTG RLRAVEQRRHRSAPVVNNQGRLLLTQEEWMAKLKNPGASGEKGTPSGSGGGGNKRTGG SRRHDRGKGGSRQAAGPGDGSNQPKKTDKCRYCGKKGHWAKECRSRLRDEAHLAQGEE EEEPMLMVATAQVNAISSSSPPRFTSLPALEQIHLDESKLFVQLGGEHGGEATRWILD TGATNHMTGTRSAFSELNTGIRGTVKFGDGSVVGIEGRGTVLFKCKDGEHQALEGVYH IPRLTTNIVSLGQLDEEKFKWSCEDGVLKIWNKQRRLLAKVVRSPNRLYVVKLNIGRP VCLAAQGGDIAWRWHARFGHLNFRALEKLGRAVMVRGLPLINHVDQVCDSCLVGKQRR LPFPSKAKYRAKEKLELVHGDICGPVTPATPSGNKLFLLLVDDLSRYMWLILLSSKDQ ASVAIKRFLACAEAEAGRKLRTLRTDRGGEFTAHAFAEYCAEHGIQRHLTAPYTPQQN GVVERRNQTVMGMARSMMKAKSLPGWFWGEAVNTAVFLLNRAPTQCVDGKTPFEVWHG VKPPVHFLRTFGCVAHVKNGGQRLAKLDDRSMPMVFVGYEAGTKAYRFYNPVSRRVHV SRDAVFEEERSWEWGAEKGAGPDDDIEPFVVEHLATGPTGQGGPVAATPTATQRSTSA PAPMAPPATPSQAGTPTHGAGPRTPASASSPAIEFASPPQGDLDLDNDHDDDVPLRFR TVDNLLGASSPPGLAEREVTEGLMVAIEDEPATAEEAKQVKEWREAMIEEMASIEHNK TWSLVELPAGQRAIGLKWVFKIKKDEHGNITKHKARLVAKGYVQRQGIDYEEVFAPVA RIESVRVLLAVAAHRSWSVHHMDVKSAFLNGDLAEEVYVQQPPGFVAAGHERKVLKLH KALYGLKQAPRAWNSKLDSSLLMLGFARSECEHGLYTRSDGEKRLVVGIYVDDLIITG GSTEVINTFKTEMKTLFRMSDLGVLSYYLGIEVRQGRRGIELLQAAYAKKILEKAGMG TCNPCATPMEARLKLSKQSTSPAVDATEYRSLIGSLRYLMNTRPDMAFAVGYLSRFME NPRQEHLAAMKHLLRYVAGTIDYGLVYTSGDTEFNLVGYSDSDMAGDIDDRKSTSGII YFLGGNPVAWQSQKQRVVALSSCEAEYIAGAAAACQGVWLRRLLQDVVGVSGPPPQLK MDNQSAIALSKNPVLHDRSKHIDTKFHFLRECVDSGAVRLAFVSTQAQLADIMTKALG RSKFQELRELIGVTKLK</aaseq> |
| Gene Sequence |
<dnaseqindica>154..4515#ttttttggccgcaccaattccctgtccacgttcgtgtgtgttctgtgttgtgttgcagctcccggcgttgtcttcctcaactccggcgagcgctccgactccggcgagggtcggaacacttggtatcagagccgaagatcatcgggaggcgggatgtcgcggcactccgagccgcacggcgggcgttcgcacacgccgccgcgtcgtcgacgcctatcgatctcgccggagcccactcgtgggcgcggcgggccgaagatcatcgtcaggcgcacgatcaaggaggccaacgcgacgatccagtacccgacgctcacccgcaccaactacgacgaatgggcaatgttgatgcaggtgaacatggaggcagcaggcatctggtacgcggtcgagccgtaccccgacgaggaggtagagtaccgcgacgaccgtctcgctctggcggccattctccgctccgtcccatcggagatgctccccacgctccgtggcaagcgctcggcgcgagctgcgtgggacgcgatcaagacgatccgcgtcggcgtcgagcgcgtgcgcgagagcaaggcgcagcagctccggcgtgagttcgcggcgctgacctggaaggagggggagaccgccgaggacttctccgtgcgcatcaccggcctcgccaacaacctccgcacgcttggcgacaacatctccgacgccgacgtcgtccgcaagatgcttgacgtcgtccccgagcacctggaacagatcgccgtcgcggtcgagacactccttgacctgaacaccgtttcggtcgaggaggtgaccgggcggcttcgcgccgttgagcaacggcgtcacaggtcggcgcccgtcgtcaacaaccaggggcggctcctcctaacgcaggaggagtggatggcgaagctcaagaaccccggagcgtccggagagaaggggacccccagcgggtccggcggaggcggcaacaagcgtaccgggggatcgcgcaggcacgaccgcggcaaaggcggctctcgccaggctgccgggcctggagacggctcgaaccagcccaagaagacggacaagtgccgctactgcggcaagaagggccattgggctaaggaatgccggtcacggttgcgggacgaggcccatctggcccaaggcgaagaagaggaggagcccatgctgatggttgccacggcgcaagtcaacgccatctcgtcttcttccccgccgcgcttcacatcactgccggcgcttgaacagatccacctcgacgagagtaagctcttcgttcagctgggcggcgagcacggaggagaagccaccagatggatcctcgacacgggcgccaccaaccacatgacggggacgcgatctgccttctccgagctgaacaccggcatccgcggcacggtcaagttcggggacggctccgtcgtcggcattgaagggcgtggcaccgtcctcttcaagtgcaaggacggggaacatcaggcgctggagggagtgtaccatattccgcgcctcaccaccaacatcgtcagcctggggcagctcgacgaggagaagttcaagtggagctgtgaagatggagtcctcaagatctggaacaagcagcgtcgactactcgccaaggtggtgcgctcgccgaaccgcctctacgtcgtcaagctcaacatcgggaggccggtctgcctcgcggcacaagggggcgacatcgcctggcgttggcacgcaagattcggccacctcaacttccgcgcgctcgagaagcttggtcgcgccgtcatggtgcgcgggcttcccctgatcaaccatgttgatcaagtctgcgacagctgcctggtcgggaagcagcggcgcctgcccttcccgtctaaggccaagtaccgcgcgaaagaaaaactcgagctggtgcatggggacatctgtgggccggtgacgccggcgacgccaagcgggaacaagctgttccttctcctcgtcgacgatctgagccgctatatgtggctcatcctcctcagcagcaaggaccaagcatcggtggcaatcaagcgcttcctggcgtgcgcggaggcggaagccgggcggaagctgcgcactctgcgcactgaccgcggcggcgagttcacggcgcacgcgttcgcggagtactgcgccgagcacgggatccagaggcacctcaccgcgccgtacacaccccagcagaatggcgtggtcgagaggaggaaccagacggtgatggggatggccagaagcatgatgaaggcgaagtcactgccgggctggttttggggggaggcggtgaacaccgccgtgttcctcctgaaccgggctccaacgcagtgcgtcgacggcaagactccttttgaggtatggcatggtgtcaagcccccagtccattttctccgcacgttcggttgtgttgcacatgtgaagaacggcggccagcgactcgccaagctcgacgacaggagcatgcccatggtgtttgtgggctacgaagctggaaccaaggcataccgcttctataacccggtgtcgcggcgcgttcacgtgtcgcgcgacgccgtgttcgaggaggagcgaagctgggagtggggagccgagaagggagctggacctgacgacgacatcgagccgttcgtggtggagcacctcgccacgggaccaacggggcagggaggccctgtcgccgcgactccgaccgcgacacagcgctctacatcagcaccagctcccatggcgccgcctgcgacaccaagtcaagccggaacgcccacacacggggcggggcctcgtacaccggcttcagcctcttcaccggcaatcgagttcgcctctccgccgcagggggacctcgatctggacaacgaccacgacgacgatgtacctctccgcttccgcaccgttgacaaccttctcggggcatcctcgcctccgggtcttgcagaacgggaagtgacagaggggctcatggtggcgatcgaggacgaaccagcaacggctgaggaagccaagcaagtcaaggagtggcgtgaagcgatgatcgaggagatggcatcgatcgagcacaacaagacctggtctctggtggagctgccggcggggcaacgtgccatcggcctcaagtgggtcttcaagatcaagaaggacgagcacgggaacatcaccaagcacaaggcccgactcgtcgcaaaaggctatgtacaacgccaaggcatcgactatgaagaagttttcgcgccggtcgcaaggattgagtccgtgcgcgtgctcctggccgtggccgctcacaggtcatggtcagtgcaccacatggatgtgaaatcggcgtttctcaacggcgatctggcggaagaagtctacgtgcagcagccgcccggctttgtcgccgccgggcacgagcgcaaggtgctgaagctgcacaaggcgctttacggcctcaagcaggcgccacgcgcctggaactcgaagctcgacagcagcctgctcatgctcggtttcgcccggagcgagtgcgaacacgggctgtacacgcgcagcgacggcgagaagcggctggtggtgggaatctacgtcgacgatctcatcatcacaggaggctccaccgaggtgatcaacacattcaagacggagatgaagactctgttccgcatgagtgatctcggtgtactgtcctactacctcggaatcgaggtccgacaggggcggcgcggcatcgagcttctgcaggccgcctacgccaagaagatactggaaaaggcgggcatgggaacctgcaatccgtgcgcgacgccgatggaggcaaggttgaagctgtccaagcagagcacctcgccggcagtcgacgcgacggagtaccgcagtctgatcgggagtctgcggtacttgatgaacacacggccggacatggcgttcgccgtaggttacctgagcaggttcatggagaaccccaggcaggagcacttggcagccatgaagcacctgctccggtatgtggccggaacgatcgactacggcttggtgtacaccagcggcgacaccgagttcaacctcgtcggctacagcgacagcgacatggccggcgacatcgacgaccggaagagcaccagcggcatcatctacttcctcggcggcaaccctgtggcgtggcagtcgcagaaacagcgcgtggtggcgctgtcgtcgtgtgaagcagagtacatcgctggcgcagcagcagcgtgccagggcgtctggctcagacggctgctgcaggatgtggtgggcgtcagcgggcctccaccacaactcaagatggacaaccagtctgcaatcgccctcagcaagaatccggtacttcacgatcgatctaagcatattgatacaaagtttcattttcttcgtgagtgcgtggatagtggggcggtgcgcctggcgttcgtgagcacccaagcgcagctcgcggacatcatgacgaaggcgctcgggaggtccaagtttcaggagcttcgcgagctgatcggcgtcaccaagctcaagtgaacgacgccggtgcttaaggggagattgttgaataaaccccggcgcgttctagttaggatagttagttgagtttccttgttttcagctgagcccgagttttgggcgcgtcttgtacagaggctcgacgtgtgcacgttcacgcgggagtctggtagtcgtgagcgagtctcgcggcacgctcgagctgtgggatggcgcagttcgtgaagagcgtggcgtgcggtgcgcgcgtcatggccggcatggccatatgttttttttctcctataaatagcaagagctacagaaaacgcggtgatttttttggccgcacc</dnaseqindica> |
| External Link(s) |
