Os08g0412200

From RiceWiki
Revision as of 13:00, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0412200| Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein| Version = NM_001068328.1 GI:115476393 Gen...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0412200

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001068328.1 GI:115476393 GeneID:4345558

Length

4727 bp

Definition

Oryza sativa Japonica Group Os08g0412200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:19809272..19813998

Sequence Coding Region

19809595..19809642,19810566..19810676,19810750..19810819,19811328..19811425,19811519..19811566
,19811638..19811693,19813438..19813561,19813664..19813753

Expression

GEO Profiles:Os08g0412200

Genome Context

<gbrowseImage1> name=NC_008401:19809272..19813998 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:19809272..19813998 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggccgctccccgctccggggagggcaaggacttcctgccgctggaagaaaggcctgggaagaagagggcccgggaggagcagcccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttctatgaggaacagatgcaaggtttctttcagcaatttggaactgttaaaaggttgaggattgcccgaaaccgcaagacaggaaagtccaagcattatgggttcattgagtttgagaaccctgaggtagcaaagattgtggcagatgagatgaacaactacctgctgtttgagcacactttgcaaattgcgattgttccacctgagaaaattcatccaaaattgtggaaaggtgtgcgacgggggtttataccaattgatcgggtagcaattgaacggaggaggctgaacaaggataaaacaatagaagagcacaaaaagttggttgacaaaatcgtaaaacgggatgagaagcgtcgcaaaagaatcaaagctgctgggattgattacgagtgtccaccccttatcggcagcgttcagccttcagctaagaagatcaagtttgaggattag</cdnaseq>

Protein Sequence

<aaseq>MGLREKKRNQRRVLARRSAAPRSGEGKDFLPLEERPGKKRAREE QPEEPENTSTVLYIGHIPHGFYEEQMQGFFQQFGTVKRLRIARNRKTGKSKHYGFIEF ENPEVAKIVADEMNNYLLFEHTLQIAIVPPEKIHPKLWKGVRRGFIPIDRVAIERRRL NKDKTIEEHKKLVDKIVKRDEKRRKRIKAAGIDYECPPLIGSVQPSAKKIKFED</aaseq>

Gene Sequence

<dnaseqindica>4357..4404#3323..3433#3180..3249#2574..2671#2433..2480#2306..2361#438..561#246..335#ctctcgccgtcgtcgcgcctcgacggcttttgctcccctctcccccaccgcctcctccggccgccgccgccgccgctgccgccgcccgacgacgtagtcaggtaagcacggctcaccgtgtcctcctccccctccgattctccaccgtctcctcccttctcggggggacctccgctcgcgcgccgtggttgtgagaatcccggcggcttctctcgcaggggggctcgtcaggagtaaggagggagatggggctgagggagaagaagcggaaccagaggcgcgtgctcgcccggcgctcggccgctccccgctccggggagggcaaggacttcctggtgcgcgcctccatccccagctcgtggtgttcttctgccacggtagcttttggttctgatttctgatgtctgtgtgatgtgttttgtgcgtgctcggcgcagccgctggaagaaaggcctgggaagaagagggcccgggaggagcagcccgaggagccggagaacacgtccaccgtcctctacatcgggcacatcccccatgggttctatgaggaacagatgcaaggtgtgttcgttgtttatggcacatagccacatcaatgataaacaaaaaaactagctgtaccgtccacgcgttgctgcgaatctaataggaaaattgtttgctattaaaaaattaatcccacaaatatataattttcattgttctaatggctcaagcatatgttcttgccacttcactctaagaaaaggacagattggcataagaaattaatcaatatagtaagaactaagaacaaactcgacagcttaaatttcccttttccagattgtgcatagatagaatgtttgtggctagtcatcagatagtaatatgaagatagtcaaatagattcgaacaatatgtggctcgtaaatggcatgctcagctccttatgtaccataaagtgttaaaaacaaattttgaaatcaatgcattgagagatgcaccatttcattaagtaggtattggtttgacagaaatgctttaattatgtgtgacattcagtagcattttcttccactgtgtcctctttctttaccttctgaaatttgtcctcttgtttaatgaattcaacaagctcttccgctatttagtggagcttaaaattgcaagtgaattgaatcttggagcttaaaattgcaattgaattgaatctttttgcttgatgaaacaatattaagacaaggaaaatgaggcaatcaagcaggttagtaattaccaatcaggaactacaaatgtatgatttcatgaaaactcagttgaaaggaatggaaacatgtgatcattgatgattctaagcattgaagactatgatttcatagaatagaactaagtaatagtgtccatagttgaatagcgtgatgaaatagtcagtaagacgaatatgcatgcattaattttgatccaaggcacaacgagtgtaaaatgagtttgtcgttagcttttcccaagcattagacatgattccattgatcagtggagcataaaccagaatattgggagaagagcgaaccaaaagaagtgtagaattgcaaaattgcaaatttcagtataaacatatattctcaatcccattttcagccttaatcaaattctttcattgatcaggcaaagcaaacaacacaattccaaaatgccttggcttatctcacttaagtgagtatggggcatgaaattgtagtagcaataccagggcatttatttgcattttctaatcaaaatgaatggattaccctccgtcagaaaaagaaattctattaatgacaccttgtagctgcttatcatccatgcatgcacagaaatcgaattaatcatatatataggaggtattaacttgagcatgaacaacgaaggggaatgcacataaggaatccacagagtcgcagaagtttgatgacatgatgattagaaaggatgtgctcctctgtactgcttttacaaccatgtcttacaaagtagttctgttaacgaccaattgggaagggctagagacgtgttgggggtgacaactgccaaataaatcataaaatgactggacatatgcggcaaatgcatcttttctaactattcacaacaaaaatgataaaatcttatccaaggacagaaatttattgcactgccaatctaatggcttgtattttgtggacgatgctcagtgggaagccttggtttagtcaataatgtaggagagataggtatgataacctgatggtgtaagggatgcaaagggatgtgatgctaatgctctgtctttttgtctttgcaggtttctttcagcaatttggaactgttaaaaggttgaggattgcccgaaaccgcaaggtattgtacactgaattacatggtttttgtgttatctttgtgatctaacttgcattttcgtcaatgtttagacaggaaagtccaagcattatgggttcattgagtttgagaaccctgaggtaagtctgtgcttggggctgcatttggtgtcaaaactctttatgctgatggaatacaaacttatatttttatttatgtgtttgtcctgtcaggtagcaaagattgtggcagatgagatgaacaactacctgctgtttgagcacactttgcaaattgcgattgttccacctgagaaaattcatccaaaattgtatgcctccgcaaaacgtggtttctattaaatcgaagtaccttttattacctttttgtgaagaaagaaaaaatagtcatcgtcctctgttatgagtattctgtttatttattgtgaaatggtttccttagagcctatggacactctagaaattaatcaggttgcctgtttccacaacattgtgctgcttggtacagtgtcaacaattgctaaaattcgggcttttaacagaactcaaaagataatgtctatcgttatataatcattgtcatgtcatggataagtttgccaatcaaatatgggtagttatcttgcaatataagtactgtattcttgtatccttcttgtatgttcttactcaacatgcaccttacaataatccataaagccctctagttgagagtttttatttagctgtgcttaaagcctgttttcttgtttgattaaaatgggagcaacattcctgtaattttacaatttgcacatcttttacctcttttgtatataggtggaaaggtgtgcgacgggggtttataccaattgatcgggtagcaattgaacggaggaggctgaacaaggtaatgcattgtgaattgaaagtatgatgtgacatgtgggcatttgatctaattagtatttgtcctgtaacaggataaaacaatagaagagcacaaaaagttggttgacaaaatcgtaaaacgggatgagaagcgtcgcaaaagaatcaaagctgctgggattgattacgagtgtccaccccttgtaagtaacactgcacttcttgctttttggttgatcaaattgcttgctcttgcttgttctgaatctaaagttagcttggtgtatgaatctaacatcgcagtgctcctgatcatttatgtaggtttatttgatgattattgcactgcctgttttatattatacttttgttgcttactaggaccattttgcaacacctttcatagaattcatgccatgtctggtcacatgctttttttaattctcttttagaacactttgatgctactatagctgcctttttgaattttatgctaaataaacgtaacttgtggacacttgagttcttggcctggacataccttgcaagggtgaagagaaagttcataattggctcagacgatctggaaagcacaaaatttcatgtgtgtgacagtatggttgtattcattcatccaacatttaattagaaagaaagtaaaattttttatattttttgcagccaaataacttaatttattgtgaagctgttgtcactttgttttttggtgaagggttaatatgaatttaacaagaagatttgctcagatgaatcatactataattttgatgagatctttcgcctggtctcattagtttgacatatccattgatggactgggaactattttatgtttgattatttacatgttgatcactttgtactgtttctaatttaggtaatggataaactgactgctgcatgtaagatgcacaaagctatatatattggatatattaattcctagtcctagattatgtggaagcaatccttgtgaacatttaaagtgcaacacacaacctgcccgcagctatctcatttgagctaaaccaagccacttttagctactatgtactatgagatgacaaaagctttgtcaggttctaatattttcttggttctacagatcggcagcgttcagccttcagctaagaagatcaagtttgaggattagtgccttttgaccagtagtgacaggacagtcgagtaaaatgactggtttgtttttagtgacgaagacgtgtcaacatcattttgttgcgtgtttaatcggtgttgtatcagtgtgaccaaaattgcacaacgaagcaggaaatttctgagattacgactggtatatctttgagaaaatagaaatcatactgtgttttcccgccgctcaagcccaggtatcctctcccaagcgtatgtgggaattatacaaagttgaatctgcatccagtttgttggattttgtctctagtttgccaattttttttttgaaggaaatagtttgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0412200, RefSeq:Os08g0412200