Os08g0427900

From RiceWiki
Revision as of 13:01, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0427900| Description = Similar to Hin19 (Fragment)| Version = NM_001068380.1 GI:115476497 GeneID:4345621| Length = 4497 bp| Definition = O...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0427900

Description

Similar to Hin19 (Fragment)

Version

NM_001068380.1 GI:115476497 GeneID:4345621

Length

4497 bp

Definition

Oryza sativa Japonica Group Os08g0427900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:20667005..20671501

Sequence Coding Region

20667315..20667537,20668032..20668088,20668729..20668919,20669650..20669718,20669813..20669947
,20670933..20671118

Expression

GEO Profiles:Os08g0427900

Genome Context

<gbrowseImage1> name=NC_008401:20667005..20671501 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:20667005..20671501 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtattacgccaggaggggtggggatagggttagtggtggtggccgtgttcaaggtggtggaggtggtggaggtggtggtgggagaggtggatatgtgctgcgtggaagatcagggatgcctcctcgagggccccttggcctcggggttaactcgcggccatcagcgcgcactattgctaagtcttttagcagaaccaaagacatgacctggagacctgatctgtttagtgatagtatggcagctagtggaattgaaactggtacaaaattgtacatttcaaacttggactatggggtttccaatgaggatataaaggagctgttttcagaagttggtcacttgaagcgctttgctgttcactttgatggttatgggcgcccaaatggcacagcagaagtggtgtttactaggagaagtgatgcaattgctgcattgaaacgttacaataatgttctgcttgatggtaaagctatgaagatagaagttattggaagtgacttaggtttgcctatgacacctcgcataaatgtggttggggcttctaatggcagacctacaagaacagttgttatgacgcctgaaattggccagcgtggcagtggttccagcagtagaccaacaggtcctacagttaatagatataaccgtggtgccttccaagctggccggggccgaggccgtggcaggggtcgtgccccattccagtcccagttccagggccgtggcactggcagtgtcaggggccgtggtcaattccagggccgtggtcgcggaaggaggcaagctgggaagactgcagatgagctggacaaagacctggaaacttatcatgctgaggcaatgaagaccgactga</cdnaseq>

Protein Sequence

<aaseq>MAYYARRGGDRVSGGGRVQGGGGGGGGGGRGGYVLRGRSGMPPR GPLGLGVNSRPSARTIAKSFSRTKDMTWRPDLFSDSMAASGIETGTKLYISNLDYGVS NEDIKELFSEVGHLKRFAVHFDGYGRPNGTAEVVFTRRSDAIAALKRYNNVLLDGKAM KIEVIGSDLGLPMTPRINVVGASNGRPTRTVVMTPEIGQRGSGSSSRPTGPTVNRYNR GAFQAGRGRGRGRGRAPFQSQFQGRGTGSVRGRGQFQGRGRGRRQAGKTADELDKDLE TYHAEAMKTD</aaseq>

Gene Sequence

<dnaseqindica>3965..4187#3414..3470#2583..2773#1784..1852#1555..1689#384..569#attgactccacctttgcttccttctctactacatctcctcctctcctcacgtttccgccgccgccgccgcctccgcctccgcacggccgagcagcggcgagcagccgccggcgtcctgctgcttcctactccgcatcctcgcaacgccggtgagtatcgcatcgcatcgcaccgcaccgcaccgcaccgcaccttctctctttgccctaatcctacccccctctcttcttctagatctggaagaggttcctctcttcgcctcgcgcctcgcgcctccccccctgatcgagccttgtaatgttgcaggtttttcatcgtttgattgttggagaagaaggagaagaaccgtgttaatctgatctgaccgaagcgagtttgggattatggcgtattacgccaggaggggtggggatagggttagtggtggtggccgtgttcaaggtggtggaggtggtggaggtggtggtgggagaggtggatatgtgctgcgtggaagatcagggatgcctcctcgagggccccttggcctcggggttaactcgcggccatcagcgcgcactattgctaaggcaaggccaccgaaactgacgctgtgtttttgttcatggtcagatttctcctgaatacgctaaaaaaaaataaattactgaatgaatgaagagagagcatctctaagattttgtacaatgtggaggggcagaagttatcactaatggagcgagcctttgtcgagttggatttggctagagcatctctctatcatgtggaggtggaggagaggaagaagtagctttgctattagtctttccttttttagaggagaaggcagtggttttgccgatcggttaacgaggaaatgagattacagggagctggcccaactagggtgacagcccaaagtttttacaatttgatgttcctagagaactcaaggggaaccaatgccacgctagtgaatgctctcctcctttgctgttaatctcttgtgaaaaactttgattgggtagatcatttctaaggtttcatttatggagtggcagaaataactggtggatacatctagtgggaactttgaaggacagcaactgctcttcgatcaaatggatcgaaataaatggaaaaggaggtttgtcacacatatggatcgaaccaaatgaaaagaaaaaaaaagaagtttgtggtattcttgcaattcaatatataatctgcatgtggtgccgaaggaaggatcttcattgatccttgtgcaatacctggaacttcaatgcagctctcatctgacagctttgggatctgctatggtgaagtgcttctaggatgtctccagagaaaatgctctagccatttatctactccacttgtgatatttgtggaactctcttcctctccattttaagttaatgcagcattttcatagtcaagctgcttatttctgctctaccataaagattgatattactaatgatagttgccatgatcatacagaacagtttgaggtgatatgcttctgtgatgacacattttctcacatgctggatgtttggccattttcagtcttttagcagaaccaaagacatgacctggagacctgatctgtttagtgatagtatggcagctagtggaattgaaactggtacaaaattgtacatttcaaacttggactatggggtttccaatgaggatataaaggtttgttagactaattaattttttgggatatttcttttcactattcttgttggatatagagttgacaggctaacattttcaattcgccttgtaggagctgttttcagaagttggtcacttgaagcgctttgctgttcactttgatggttatgggcgcccaaatgtttgtacttcttatcatatttacaaatagagcatattttgatttcaattaggtattatatgtaaactcaaagtgatgtttttcttcggtgaaccaatttgcattgtttcaagggaaaccatacacaccttgtcatcttcccactcagtactttcagtttgctctagatgatcacatatgaagtataattataccttgtcttatggatgaaaacttccagtgcacagatttatgccttgcattagatttaccaagaacaataaaacaacaataggataatatgtatcttagtgattatcttgcgtttgagataacagcaagaagacaaacataggaaatgtttgtttttagtaatatatatgtagggattatgtctttcttattctttcacacattgaactttgctgagcttttctggttgaaactccataaaatggtgatctgcttagagtacatttgcaaaatacatgtatttgttgtaataattatgtactatatatagcgtggggacctccctctctgttttctggtcaaaaaaatttatatatacacaatcttatgtactaattagctggcctagcaaattaacagcatgtaaacagtgtccatttgcggtgcttattctgcaaaaagaaaatgataaatgaacttttgtgatcactgaaacttttgctaactgcctcttgcctcgattattgtgctaatatctttttttgttaaatttctgcagggcacagcagaagtggtgtttactaggagaagtgatgcaattgctgcattgaaacgttacaataatgttctgcttgatggtaaagctatgaagatagaagttattggaagtgacttaggtttgcctatgacacctcgcataaatgtggttggggcttctaatggcagacctacaagaacagttgttatgacgtgagtaatccttccatttctatgtatctcaatttcttatttagcttccaaggacaaaaagaaaatgacatacctggaacctaagctggatcacacatcacaatgcagtctgtatgtcccaagttaaatattgaatactgggctatcagaactcctaattgcttgcagataaactcttctttcttttttctgctaacaatatggcatgtctacaagcttctgttcatgtgttactttagaggctgataatttgtttgatgagttgtaatatttttaagtaaacttcttgttgggccagtatatgtgctaatttaacttgtcactgccaatatgagctgtttacttagcagattctagtattgtgtgaaatattctaatgagctagccatatttaggaaggactatagtctgaaaacggataaaagttcaactgataaatatgtttcgtcacgttcgttagcagttgtgtgttgcaagtcaattgataacttgtgaaatttaactccagtttgaaaatgtgctatgttgggcttttgttgttttcatttttctctgagcctttaaagctatatacctatcaaccattcagtcaatctaccttatttttctataaatctcaacaaaaataaatatatttcaggcctgaaattggccagcgtggcagtggttccagcagtagaccaacaggtcctacagtgtaaggcttctcacagtatcattttcttagctgtgtaatttattctgttacttatctggtactagtagcgaatagtgaccacatcattttgcttggttattttaaaagcatcatgatctacagtaaagcaactgccatttggttattattgtaaccaatttcttcttgtttttaataagaagcatgtaatgtgcagagtttcaggtttacattttatactacatgtctagcataaattaatcatgtttccacctgttcctgctatactacaatttttcctagtttagtcatggatactgtatgcatttgtgacatacaaagaagaaaataaggttgttttctactagttattctcacttttggcggtggttggtgacaatttcatcttgcttgtgtttttccctagttgacacaaccaaactgaaaaacaccacaaatgtgttgaaactttattgatctttttgctgatctgtcacctgaacttgccattccagtaatagatataaccgtggtgccttccaagctggccggggccgaggccgtggcaggggtcgtgccccattccagtcccagttccagggccgtggcactggcagtgtcaggggccgtggtcaattccagggccgtggtcgcggaaggaggcaagctgggaagactgcagatgagctggacaaagacctggaaacttatcatgctgaggcaatgaagaccgactgatcgctgcagacctaacggtggtggcagccattttgtcacaactgctctataagcatctgttgcaagattatcgttatgataggttagcccgattgagctgtagtactcctggaagcagagaactttctgcttaggtttgcaaaaacaaactctgcctctagaagtttgaagaagacgcaactgtggtgtgtagtgattatctgggatttgcaaccctaggttttttttttcttttttttggtgctgcttgctcttgagattgtcgtgttaagcttcccaaacaaaagtaaatcctgggattttatgactc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0427900, RefSeq:Os08g0427900