Os08g0459400

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Revision as of 13:03, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0459400| Description = Transposase, IS4 domain containing protein| Version = NM_001068509.2 GI:297608687 GeneID:4345761| Length = 3424 bp| ...")
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Gene Name

Os08g0459400

Description

Transposase, IS4 domain containing protein

Version

NM_001068509.2 GI:297608687 GeneID:4345761

Length

3424 bp

Definition

Oryza sativa Japonica Group Os08g0459400, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:22625896..22629319

Sequence Coding Region

22625896..22625947,22626471..22626514,22626675..22627193,22627279..22627504,22627583..22627909
,22628162..22628412,22628621..22629319

Expression

GEO Profiles:Os08g0459400

Genome Context

<gbrowseImage1> name=NC_008401:22625896..22629319 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:22625896..22629319 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgcaggcgaccagggccatgtccatctccggcggttcaattcttcgaattgccaagcccccacaatctttgccacgattttctgcagcaagatggatctagattctactcatcagtatattgtccatcaacgaactagaactttgggtgttttagctgttgtgttggcaattattcactggcgatgtcgtataagaaatagacgacatccaaggaagtatggtccattggtggatagagatttggtcaggaaaacaagattagatgatttgtacaatgggagtgatacaacttgcatcagtcagcttcggatgaggaaagaagtgttctggaaacttgcctccaaattacgtgataatggcctactatgtgacacaatccatgtctcagtggaagaacaattagctatgttcctgcacacagttggccacaatttaagaaatcgtgtgattggattctatgtcataagatccagtgagacagtgagccggtacttcaatgaggtgttgaaagctttatgttgtcttgctaaagatatgatacaaattaggtcaatagagacccattcaaagatagttagtaatcctggtagattctacccatattttgaggattgcatcggggcattggatggcacacacatccctgcatttgtcccagagaatatagttaacaggtttagaggtcgcaagtcctatccaactcagaatgttcttgctgcggttgactttgatttgaggtttacctatgttcttgttggatgggagggttccgcacatgactcagtggttctcaaggctgctcttagaagatcaagtggaattcaaatacctgaaggcaaatactatttagctgatgcagggtatgcagcaagacctggtatactaccaccatttaggggtgttcgataccacctgaaagagtacgaaggcgggaaatcaccagaaacacctcaagaattattcaatcttcgacattcctcccttcgcacatctgttgagagagcatttggaaccttaaaaaaccgtttcaaagttcttgctagcaagcctttctttccatataaagtccaagtgaagatagtaatagcgtgttgtgtactgcataattggatccttgataatggtcctgataacatcatatatgatgaagctcgttggtatattcataacatggatataggaggaagcaacaaacatggcaagggaaaaagtaaggcacgcaaaggagttgggggatcaggtgtgaggtcaaaacccataaattggccaccagcattctctgaatttcttcttgactgttacattgaaaagaagttagagttgccaccaaagggagtgatcaagaagatgcatcacactgcttgcacatcagctattaatgcaaagtatggcagtacttacaatgttgatcagattaatgaccgtggaattctttcaaagcctattcagttcttcgataagctgcaagagttgtttagtggttcctcggctgatggagcgtttatggaagatccttcaagtgttgctgattttgatgatgaagctgatgaacttgatactttcaatgatatgtcaacctatgctgaaacaaaatatccacaaggggaagactcggacaaattagaggcagacagtgatgattgcaaggaggtggcagcccttaatgcagcaactgcagcccttaatgcagcaactagtcaagtttcatcttctcataccagtggtctgaagccaaacaagaagagtttcaaaaagtgtgggaagccaaagaccttgcctcaatcacataatgataagggtaagcttaaggcaaagtcatcatctggattgcatgatgatgatgatattgatgtgctgatcactagtaccttggttggaatcaaagataaccttgccaaaccaatacagactgcagcccctcaagatccaaatgcccctctatgggacatgctcaagaagattgccttagaacctgaagataagatgagagttggactacacctttgcaagccagaatttcaagctcatcgcagttttcttattagcatgggtcaagaatatcttgaacgttgggtttacaagttcttatctggtgatgatacaggcctctag</cdnaseq>

Protein Sequence

<aaseq>MAAGDQGHVHLRRFNSSNCQAPTIFATIFCSKMDLDSTHQYIVH QRTRTLGVLAVVLAIIHWRCRIRNRRHPRKYGPLVDRDLVRKTRLDDLYNGSDTTCIS QLRMRKEVFWKLASKLRDNGLLCDTIHVSVEEQLAMFLHTVGHNLRNRVIGFYVIRSS ETVSRYFNEVLKALCCLAKDMIQIRSIETHSKIVSNPGRFYPYFEDCIGALDGTHIPA FVPENIVNRFRGRKSYPTQNVLAAVDFDLRFTYVLVGWEGSAHDSVVLKAALRRSSGI QIPEGKYYLADAGYAARPGILPPFRGVRYHLKEYEGGKSPETPQELFNLRHSSLRTSV ERAFGTLKNRFKVLASKPFFPYKVQVKIVIACCVLHNWILDNGPDNIIYDEARWYIHN MDIGGSNKHGKGKSKARKGVGGSGVRSKPINWPPAFSEFLLDCYIEKKLELPPKGVIK KMHHTACTSAINAKYGSTYNVDQINDRGILSKPIQFFDKLQELFSGSSADGAFMEDPS SVADFDDEADELDTFNDMSTYAETKYPQGEDSDKLEADSDDCKEVAALNAATAALNAA TSQVSSSHTSGLKPNKKSFKKCGKPKTLPQSHNDKGKLKAKSSSGLHDDDDIDVLITS TLVGIKDNLAKPIQTAAPQDPNAPLWDMLKKIALEPEDKMRVGLHLCKPEFQAHRSFL ISMGQEYLERWVYKFLSGDDTGL</aaseq>

Gene Sequence

<dnaseqindica>1..52#576..619#780..1298#1384..1609#1688..2014#2267..2517#2726..3424#atggccgcaggcgaccagggccatgtccatctccggcggttcaattcttcgagtactaaccatctccttcgggcacggcgactaagggcctgtttggttgctaccctgagcaaataagcctggcctaaggtcatgcctgtaactcgcctggcatctgtttggttgctaccctgaggattctagcctgataaatcttgcctgagtgtactcgcctgagtcaggcgtacaaaatgggtggcctgagcatttcgctccacctgcctgagtaaaatcaccgctcttctatacagtagtgaaaacgagaccacttcttcctcctcctcactgctagcctagggttcttgcggagaccagttcccatcgattcttccatggctccagcagcggtgaccaaggaacttgcagatctggtggccagttgtttctttttccagtaaaagtcctgcatttggtgatctgttagagcatagctctgaccgtgagagctagcaggtaagtagaaaaagaagagtactttgtccagatctgaagggaatcaaaatttctaactctctcctttcctctgtgcgcgtcagattgccaagcccccacaatctttgccacgattttctgcagcaaggtgagaacacaatcgcagttttttttttacttttcccctctcttgctgctttgttattcaaggatccgtagagagtatgcctattagaagtaaaactatgtcaaaatgtgtgctttttttcactagtttctttttttttcctttgtcgtgtgatgctcagatggatctagattctactcatcagtatattgtccatcaacgaactagaactttgggtgttttagctgttgtgttggcaattattcactggcgatgtcgtataagaaatagacgacatccaaggaagtatggtccattggtggatagagatttggtcaggaaaacaagattagatgatttgtacaatgggagtgatacaacttgcatcagtcagcttcggatgaggaaagaagtgttctggaaacttgcctccaaattacgtgataatggcctactatgtgacacaatccatgtctcagtggaagaacaattagctatgttcctgcacacagttggccacaatttaagaaatcgtgtgattggattctatgtcataagatccagtgagacagtgagccggtacttcaatgaggtgttgaaagctttatgttgtcttgctaaagatatgatacaaattaggtcaatagagacccattcaaagatagttagtaatcctggtagattctacccatattttgaggtatctcacgtgaaatatacttattcaacattctaattaatgtaaccactttatgtttgtatagtaataatttcttctaacttaggattgcatcggggcattggatggcacacacatccctgcatttgtcccagagaatatagttaacaggtttagaggtcgcaagtcctatccaactcagaatgttcttgctgcggttgactttgatttgaggtttacctatgttcttgttggatgggagggttccgcacatgactcagtggttctcaaggctgctcttagaagatcaagtggaattcaaatacctgaaggtgtgcatgaagctttagtattttcaggtgcacaatattttgtgacaaggcaataaaaccattcatcttctgttgtaggcaaatactatttagctgatgcagggtatgcagcaagacctggtatactaccaccatttaggggtgttcgataccacctgaaagagtacgaaggcgggaaatcaccagaaacacctcaagaattattcaatcttcgacattcctcccttcgcacatctgttgagagagcatttggaaccttaaaaaaccgtttcaaagttcttgctagcaagcctttctttccatataaagtccaagtgaagatagtaatagcgtgttgtgtactgcataattggatccttgataatggtcctgataacatcatatatgatgaagctcgttggtatagtaagctacctagatcagctagagtagcgacagattatggcgaggagcaccaacagtggatagaatttcgagaaaatctagctaatattatgtgggaggaacattaacagtggtgttgtatggcatggatattgttctatgactgttagctatttctaatgaattcttctttcagctcttcatattatagcattttctactttatgtttttttgttggatgccattattacctactgtgcattgctttgtagttcataacatggatataggaggaagcaacaaacatggcaagggaaaaagtaaggcacgcaaaggagttgggggatcaggtgtgaggtcaaaacccataaattggccaccagcattctctgaatttcttcttgactgttacattgaaaagaagttagagttgccaccaaagggagtgatcaagaagatgcatcacactgcttgcacatcagctattaatgcaaagtatggcagtacttacaatgttgatcaggttcaacgacactataggcaccataaagagacttgggcacttgtagctcgccatctaaatgagagtagtggtggctgggatgagacaaacaaaatgttgtctctctcccaatctaccttggatagcctatcggtaatctcttgttgttttgaatacatgatatatttgttaaatagattttctattattgatgactttttcttggcagattaatgaccgtggaattctttcaaagcctattcagttcttcgataagctgcaagagttgtttagtggttcctcggctgatggagcgtttatggaagatccttcaagtgttgctgattttgatgatgaagctgatgaacttgatactttcaatgatatgtcaacctatgctgaaacaaaatatccacaaggggaagactcggacaaattagaggcagacagtgatgattgcaaggaggtggcagcccttaatgcagcaactgcagcccttaatgcagcaactagtcaagtttcatcttctcataccagtggtctgaagccaaacaagaagagtttcaaaaagtgtgggaagccaaagaccttgcctcaatcacataatgataagggtaagcttaaggcaaagtcatcatctggattgcatgatgatgatgatattgatgtgctgatcactagtaccttggttggaatcaaagataaccttgccaaaccaatacagactgcagcccctcaagatccaaatgcccctctatgggacatgctcaagaagattgccttagaacctgaagataagatgagagttggactacacctttgcaagccagaatttcaagctcatcgcagttttcttattagcatgggtcaagaatatcttgaacgttgggtttacaagttcttatctggtgatgatacaggcctctag</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0459400, RefSeq:Os08g0459400

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