Os08g0472000

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Revision as of 13:04, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0472000| Description = TRAB1 (BZIP transcription factor)| Version = NM_001068553.1 GI:115476843 GeneID:4345807| Length = 6148 bp| Definiti...")
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Gene Name

Os08g0472000

Description

TRAB1 (BZIP transcription factor)

Version

NM_001068553.1 GI:115476843 GeneID:4345807

Length

6148 bp

Definition

Oryza sativa Japonica Group Os08g0472000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:23322483..23328630

Sequence Coding Region

23322496..23323251,23323491..23323562,23325035..23325088,23328357..23328431

Expression

GEO Profiles:Os08g0472000

Genome Context

<gbrowseImage1> name=NC_008401:23322483..23328630 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:23322483..23328630 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacatggacgagctgctgcggagcatctggacggcggaggagagccaagcgatggcgtcggcgtcggcggcggcggcggcggcggaggggggcctgcagaggcaggggtcgctcaccctgccgcgcactctcagcgtcaagacggtggacgaggtgtggcgggacttagagcgagaggcgtcgccgggggcggctgctgctgacggcggcggcggcggcggggagcagcagcagcccaggcggcagccgacgctcggggagatgacgctggaggagttcctggtcagggccggggtcgtcagagagaataccgctgcggcggctgctatggtagctgcggccgccgctccgccggtggctccgcggtcgattccggctgtcaacaacagctccatcttcttcgggaactacggaggcgtcaatgatgctgctgctgccgctgctggtgcgatgggtttctcaccggtggggattggggatccgaccatggggaataggctgatgtccggagtggcagggattgggggtggtgcgatcactgttgctccggtggatacatcagttggacaaatggattcagcgggcaagggggatggggacctgtcatcaccgatggcgccggtgccgtacccctttgagggggtgataagggggaggaggagcggtggtaacgtggagaaggtggtggagcggcggcagaggaggatgatcaagaacagggagtcagcagctagatctcgtgcccggaagcaggcttacacaatggagttggaagctgaagttcagaaactcaaggaacagaacatggaattgcagaagaaacaggaggaaattatggaaatgcagaaaaatttcttcccagaaatgcagaaaaatcaggtattagaggcggtcaacaatccttacggacaaaagaagcgttgcctaagaagaacattgacaggtccctggtaa</cdnaseq>

Protein Sequence

<aaseq>MNMDELLRSIWTAEESQAMASASAAAAAAEGGLQRQGSLTLPRT LSVKTVDEVWRDLEREASPGAAAADGGGGGGEQQQPRRQPTLGEMTLEEFLVRAGVVR ENTAAAAAMVAAAAAPPVAPRSIPAVNNSSIFFGNYGGVNDAAAAAAGAMGFSPVGIG DPTMGNRLMSGVAGIGGGAITVAPVDTSVGQMDSAGKGDGDLSSPMAPVPYPFEGVIR GRRSGGNVEKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQ EEIMEMQKNFFPEMQKNQVLEAVNNPYGQKKRCLRRTLTGPW</aaseq>

Gene Sequence

<dnaseqindica>14..769#1009..1080#2553..2606#5875..5949#ggatttcgggtcgatgaacatggacgagctgctgcggagcatctggacggcggaggagagccaagcgatggcgtcggcgtcggcggcggcggcggcggcggaggggggcctgcagaggcaggggtcgctcaccctgccgcgcactctcagcgtcaagacggtggacgaggtgtggcgggacttagagcgagaggcgtcgccgggggcggctgctgctgacggcggcggcggcggcggggagcagcagcagcccaggcggcagccgacgctcggggagatgacgctggaggagttcctggtcagggccggggtcgtcagagagaataccgctgcggcggctgctatggtagctgcggccgccgctccgccggtggctccgcggtcgattccggctgtcaacaacagctccatcttcttcgggaactacggaggcgtcaatgatgctgctgctgccgctgctggtgcgatgggtttctcaccggtggggattggggatccgaccatggggaataggctgatgtccggagtggcagggattgggggtggtgcgatcactgttgctccggtggatacatcagttggacaaatggattcagcgggcaagggggatggggacctgtcatcaccgatggcgccggtgccgtacccctttgagggggtgataagggggaggaggagcggtggtaacgtggagaaggtggtggagcggcggcagaggaggatgatcaagaacagggagtcagcagctagatctcgtgcccggaagcaggtcatacctctgccctaaattcttgcatgtgttgcatatgcagctgtttgctattgcaaatggttgtgatagaaggggaaaatagtatcacaaatctggtaaaaccggcttgtcgagattgggtccttgctgtgttgaacacaacggataatcccaaaatatttatcggtaaagggaatcttgattcgcatgtttatatgttgctttgacactgaaatttgctccattgtgattactaggcttacacaatggagttggaagctgaagttcagaaactcaaggaacagaacatggaattgcagaagaaacaggtactaattcaatgtatctttcatcaaaagacttcctaacaatgatgcatcacattttatttgttccatctgtacatcatcttcactatgctacagtattccaccagttttttaacaagtaaattttcaccagtgtcagtgtagcaaatgtttgctaaaatattcagtgtgcgctttctaaaagtaggcctgtagtaaatttcaaaattgagtgagacactaaggcataactgaaccatttgtgaaagaggtggggccatagcttgaaatatgtatgatgaaacttgaatctctgttacctttcaaacctagcagccataattttgacttgaattccatttgtgacagctttgtaacttttgcattagcatgctgtgatgcaacttcagacgggatacttcaaaattgtcttattgcttgaactagtaatattttggtggacttgcttcagtacaggtctttcttttaaggaactagtaatatctcatagaaaagtttacaaatccagtaacttattaaatgattcaaataagatatttgctcccacatgtttttcagaacgatagctgtatgtaacatctaatctcttttgttcatgctgatacagatttgccgttgtctaatattaactacttcgcctttaagattcatatttttttttctgaaaaaatagcactgaaacaaggtgtcacatgcaacataggtgtgtatgtttgtgtgctccaaaggcaaatactaacacagttatcccttttgtactatctactctaaaactaaattgttaatttgccattaagttgtagctgtatactcaattttgtccacttgaattgaaccaaagggaaacaaatcaaacccattttggaagacgtgtaaatttgtactaaatttgtatttctgccctagattttgatcaggtattcaccttacaaatatcagggcaggggcctaaatgccatgaccatacaacctagtttcatctaccttattattgtttaatatcataactagttcgtggagcagtctaatgactgatcattgtctctttgtcatgttttttttttcaagaaggaaacattaaggccttctttggatgcaagtggattatgtccattcccttcagaatgagagggaagctgtactaaattcccttctcatctgaagtccttgtgcaataaagtcctaagtggttctgttcgttttcggtgttattgattattctatcttatcaagactgaacttatgactatttcaaaaccaatattaatcttttataccatcttgtaaaatttaaagaccggttcataccaccatatacattttttttttgggataaccttcaccggtattcataatttggagggaattgcatccttgaagagcataacaataccttaagcatctttgggtggatgccaatggtaaacgattgtttgtagctttcttacattgtttctttcttaattatgcaggaggaaattatggaaatgcagaaaaatttcttcccagaaatgcagaaaaatcaggtaaatgttttggtcaaacttatgtttgtgttttgtaatattctaatgagtaaactgtgtctacaatacataaatttggtaggtgtgtgcgatctagtgcaagaacttaaaaaatgagcatataagtgcaataacttggctagtgcatgcattttggttaaaagatcgatattctacatgatatatactccctctatttcaggttataagacgttttgactttggtcaaagtcaaactgctttaagtttggccaagtttgtagaaaaaagtagtacactagatcgcacccacctatcaagttcttgtaccgggggtgcaatttactctattctatttcatctgtctgatacataaaaactccatgttagctatctctagcagtggaacacagttctgttgctgttagttgttactacatttttgttagagaagttgacatggtactctctacataagtacatgttatattgcatttgaacgacttgacttctccattgaacgacttacatgtttttattctcttttttgtgatagctggaaaacttggaactgcattgttggtgcttgcctatattccattagctctgctaaaatattttcccttacattttcaagttgtttttattttccatattgaacatttaatgatacatttacaacatataataaatattcatcaaattaaaaaaaatggacttgaatagcctcatcatgctgcagctgaacttttgagcttcagtcactggcattatagttgtggcatacactttaaaggaaaatagatcaccttaaaccatttcactagagcatttaaaatctctgggctatttcgcttagtgcaactgcaaagatcacaaagttggaaaaaagaaaataccatctcatgtgttgtttacatttgggctttggtcccacatgtaatggcaatatctaagtagcacatcgatgggattgtgcttagcattttctcaacttctttttgtctcacttagccccccaaactactaaaccaagtcacctttctcttttataacattgcacttttagtttctccttactcaagccatgttttaagtttaagttgtgcacaatgatagatggaatcataacctatttcactgaattttttgctactattttcatgcatttccatatcttgaagttgaacatccattatgtgttgctaacatatacaaacaatctttcaaaattactcccgtaaaaaaatattgtaatgtatgtcgtatcattccacaaagtgaaatgcatggttcaagtaggtcctaggcgctatagttcagcatggctggcgcctatgctctgccttggtgggggcgtggggcctagcgggcgcctaggtgagaccagctagtcaaatccaagaaattagcaagcatattacataaaaacttagacaatataacactacagtagtaagacaagagcacccaaggtagattagctgcctaatgcaccatccatgcctaactatgacggcaacactggtgaaatgcccttagggaagtaaagtggactttctaatttaaatcttcttctgcaattacataaaatcaatactttatcaggaaaatggtgaaaagacagtttttgatggatggccagtaggcagtagaactaactcgattgctttgtttaattaacactcccaattttgatctgttttgtcaatgatattcacgaatgtaagaaattagaacagcagcttcaaatcagaaaggtgtagactgcacaagacagtactttcaccattatagcctttttttatagcctcttaaaacaatctatgaagttcagtttatttgatgctgttcatctagatggctaaaatgactgcagtggaatagtaacaacagagaaggaaaattatgcttaaaatagatttgtaagcttctcctacagaaattattctctgttggtagggatggggtgcactatagtgcaactaaatgtactaaatacacaatatcaactgaaaaggtacatttcggttgattagtccatggatacccataatggcccatgcccatccctatttgttgtgttgcgttcacaccctggagctcgtgacaccaaacatcaggaaactgccaaatgtgtggacacaaagtagagtatgggtgtgtatagttcacgctaaaattggaagtttggttgaaattggaacgatgtgacggaaaagttggaagtttgtgtgtaggaaagttttgatgtgatggaaaagtttaaagtttgaagaaaaagtttggaactaaactcggcctatatacatattagtgacttactgagaaccgaccgtggagatctatttctgcttgtttatcagaaaagtatggagcagtaaagagtgatctttgtagtattatgaacttattatggctttttggtgcctgtatacttgttttctgttttaaataattataaggttgtgcaaccaaagaagacatttctatttcactgtattatagtttagattcagtcacttgtcaatggcaaaatgtagaattgctcattagtttattgtattatagtcatggaaaaaaacctgccagccggttatcagtggtttgtcatagtaaaattgaaaaccaatcgtagctagaactagcttgtccaggtattaaaggcccaccactttggaaggcttggttgtgtacgtgcgtccgaaaaacagcacacctttatttttacttttgctttttacataaatttattgtagccttattcaaaaattgagatggaaatttcttgactttctttaaaccaagagatatttctttgataatattgactggtggcccaattgttggcaaactgggccttgacttgctgcaaaattctgctctggtttgtgggctttatggcatttgttgcttttgttccttttttcgttacgtggagcttttcttgctaggccttatgtagtcactgcaacagtatgtttttgtttggtactctctccgtttcacaatgtaagttattctacaatttcccacattcatattgatgttaatgaatctagacatatatatctatctagattcattaacatcaatatgaatgtggaaaatactagaatgacttacattgtgaaacggaggaagtactaaatttctgttataatccattcattaactgttcagttttgtttacatccacactcttccttttcaggtcttactattgtatctacatgcaattcaattttatcttgtttaggtaatgattactctgattcatggcaagcaggtattagaggcggtcaacaatccttacggacaaaagaagcgttgcctaagaagaacattgacaggtccctggtaaaatttgagttattgataaccggagcttgacaagacacaccatattttaaccttaaggttcttgtacatattgtcaggatttcaaaactcatctctctgttgtaaattgatgatcaacagagtcgagtgtactagtgcttaacttgccctgtcaccttcaacttacagttctgcaagtcttctatcgtgctcttatgtcc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0472000, RefSeq:Os08g0472000