Os08g0478500

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Revision as of 13:05, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0478500| Description = Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein| Version = NM_001068586.1 GI:115476909 GeneID:4...")
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Gene Name

Os08g0478500

Description

Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein

Version

NM_001068586.1 GI:115476909 GeneID:4345840

Length

7431 bp

Definition

Oryza sativa Japonica Group Os08g0478500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:23681707..23689137

Sequence Coding Region

23681799..23682471,23682649..23682710,23682982..23683197,23683372..23683456,23684479..23684636
,23684752..23684872,23685328..23685490,23685577..23685662,23685907..23685989
,23686063..23686924,23688513..23688940

Expression

GEO Profiles:Os08g0478500

Genome Context

<gbrowseImage1> name=NC_008401:23681707..23689137 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:23681707..23689137 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggaggcggcgggttcgtcgtcgtcgtcgtcggcgtcggcggtggtggtggctgtggtgattgcggtggtggtggtggtgtgggttgtggtgcggcggaaggtgaggcgcgccgcggcgcggagggaggaggtgctgcggctcacgcggctggcgcaggaggagtcggagatggcggaggtggagtgcgcgcgcgcctactactcggagctgttcccgagcgtcgtgcacgcgacggagatggtggatgaggcggcgtggggggcgccgccggccgtggttccggctcaggcggaggcagaggcggagatggaggcccgggcccagccgcagccgcagccgccggtgggtgccaagggggtctgcgcggtgtgcttccggccgacgacgttcaggtgcaagcagtgcaaggctgtcaagtactgttccttcaaatgccagatagcccactggagacagggtcataaaaatgaatgccgcccaccaagcactgatgctaatcatgatgatgtggctgaactttctgttgcaaaggaaaggaaaattgagcagacaagtgcttctgaagaaaacatagctgaaaccaacacggcagccaccgtgaagaatttaaatgataaaacaaaagatatgccctcagaagtacttgcttcggtggaggttcctgatgatgaccattctgtcagtgcggtcaaactccctcaaagttcttcacaagtagcttctcttggcagtagaaagacagaatcaaatatgaaacctacaactcctgttgaaaatggttcttacacaaaggacttagatgaggcgttggtgtgtagatttcaaccttctccaccaaagattagtggctctggaagtcttatcaacaaagagtccttaattgattccaagaagcaccaggattgctctcaaactagtaacagcaaaaaatatgcagataacaacaatgctcaagctgctctacctgttgcagtagaacctaaaacttccaggactgctcttcatgtggaagttggacactccaagacaaaagctgctggctcagacaacattggtgtgtcaaaaatggtgccatctgttttgactgttgataaagtttctcctgttcccggtggacgttctgttacacctaattcatcaaaaagggctgataatattgctgaaaggaattctaaaccatcagagaaatcaatttcaacagcaaatagcctggcaacatctctgaaaaaaattgtcaggcagcaaacagcaccaaaagttgtgaggcattatccatcagagccaacacattttccatatgagcttttcattaagctctatgaaaaggttgaattgcaaccgtttggtcttcataaccttggcaatagttgctatgcaaatgctgttcttcagtgcttaatgtttacccgaccacttacatcatatcttttgggagggcttcattcaaaaaattgttccaaaaaggaatggtgcttcatgtgtgaatttgaaaaactcgttggggagggcagacaaggcaagattgctttgtcaccaactgggatactctctcatttgcctgacattggaagtagctttggtcctggtaaacaagaagatgctcatgaattccttaggtacgccattgatgctatgcaatctgtatgcatgaaggaagccaggaaaagcggcactcatcggttacacgaagaaacaacacttatgcaattaatatttgggggctatctgcgatctaagataagatgcacaagatgtgatgctacttccgagcaacatgagcgtattttggatcttactgttgaaatagatggcgacatcagttcactggaaggagcacttgagcgatttacatctacagaagtcttggatggagataataaatataaatgcagcagatgcaaatcgcatgagcgcgctaaaaagaagctgacaatatcggaagcaccaaatgtcctgactattgcgctgaaaagatatcagtctggaaagtttggaaagatcaacaaagccatcagatttccagagaccttgaacttgcagcgctatatgagcccaaaagctgatgacacttcccctgtttacagcctgtatgcagtggttgtccatcatgatattatgaatgccgccttttctggtcattatgtatgctatgtgaaggacacgcatgggaagtggtacaaaacagatgacagtcaggtcaaacctgtatctctggaaaatgtcatgtcgaagtgcgcatacatgctgctctatgcaaggtgttcaccaagagctccaagctctgtaaggccagcgctgatggctcaagatccagcacgtgtaaagaaggacaaggcaagggtaaattcaggacggtggcatggaggaggtcccatacaccaaggtggtcagatgtacgcagatcacatgacagatgatttgccccatacatatgacgagtttggacatggaccatattcgccagcagaatctcctagtccaagtgagagttcatcaattttcaccagttccgacacagggtcacatagcaccgacagcagtgaaagcactagaaactctaccagtgaggatatggaacgcctcatatttggtgatcaagtttcatactttgatggctctatgttcggacatggggaaaacggccgtatgacttattcccgatcaaagtctagcttgggtaccagttcatcgggtcaagaggtggatcagtataggcctgacgagcacaggcttcagggtgccagggagggttggaatcagggcgatgaaagttcttccttgtatactaaccaaagtaaacatcaatttagtagtaagttaacagaacaatataggaggaggttagatgggactgagcatgatcctggagaagccaatagtgttttattgaggagatcggctagggaaaggacggcccaaacattttattga</cdnaseq>

Protein Sequence

<aaseq>MAEAAGSSSSSSASAVVVAVVIAVVVVVWVVVRRKVRRAAARRE EVLRLTRLAQEESEMAEVECARAYYSELFPSVVHATEMVDEAAWGAPPAVVPAQAEAE AEMEARAQPQPQPPVGAKGVCAVCFRPTTFRCKQCKAVKYCSFKCQIAHWRQGHKNEC RPPSTDANHDDVAELSVAKERKIEQTSASEENIAETNTAATVKNLNDKTKDMPSEVLA SVEVPDDDHSVSAVKLPQSSSQVASLGSRKTESNMKPTTPVENGSYTKDLDEALVCRF QPSPPKISGSGSLINKESLIDSKKHQDCSQTSNSKKYADNNNAQAALPVAVEPKTSRT ALHVEVGHSKTKAAGSDNIGVSKMVPSVLTVDKVSPVPGGRSVTPNSSKRADNIAERN SKPSEKSISTANSLATSLKKIVRQQTAPKVVRHYPSEPTHFPYELFIKLYEKVELQPF GLHNLGNSCYANAVLQCLMFTRPLTSYLLGGLHSKNCSKKEWCFMCEFEKLVGEGRQG KIALSPTGILSHLPDIGSSFGPGKQEDAHEFLRYAIDAMQSVCMKEARKSGTHRLHEE TTLMQLIFGGYLRSKIRCTRCDATSEQHERILDLTVEIDGDISSLEGALERFTSTEVL DGDNKYKCSRCKSHERAKKKLTISEAPNVLTIALKRYQSGKFGKINKAIRFPETLNLQ RYMSPKADDTSPVYSLYAVVVHHDIMNAAFSGHYVCYVKDTHGKWYKTDDSQVKPVSL ENVMSKCAYMLLYARCSPRAPSSVRPALMAQDPARVKKDKARVNSGRWHGGGPIHQGG QMYADHMTDDLPHTYDEFGHGPYSPAESPSPSESSSIFTSSDTGSHSTDSSESTRNST SEDMERLIFGDQVSYFDGSMFGHGENGRMTYSRSKSSLGTSSSGQEVDQYRPDEHRLQ GAREGWNQGDESSSLYTNQSKHQFSSKLTEQYRRRLDGTEHDPGEANSVLLRRSARER TAQTFY</aaseq>

Gene Sequence

<dnaseqindica>6667..7339#6428..6489#5941..6156#5682..5766#4502..4659#4266..4386#3648..3810#3476..3561#3149..3231#2214..3075#198..625#gaaggggaggggaaaaaattggaagccctagattttggcgggttggctacggcgaggtgcgggggaggggtcggggtcgggatcggcgggcggatccggtgggtggaggaggttgggcggcgagatctatgcggtggggaggggaggggaggaggaggaggaggggagcggggtgagaggggaggaggaggtggtggatggcggaggcggcgggttcgtcgtcgtcgtcgtcggcgtcggcggtggtggtggctgtggtgattgcggtggtggtggtggtgtgggttgtggtgcggcggaaggtgaggcgcgccgcggcgcggagggaggaggtgctgcggctcacgcggctggcgcaggaggagtcggagatggcggaggtggagtgcgcgcgcgcctactactcggagctgttcccgagcgtcgtgcacgcgacggagatggtggatgaggcggcgtggggggcgccgccggccgtggttccggctcaggcggaggcagaggcggagatggaggcccgggcccagccgcagccgcagccgccggtgggtgccaagggggtctgcgcggtgtgcttccggccgacgacgttcaggtgcaagcagtgcaaggctgtcaagtactggtgagttgtctgaattctgaaaccctcttctgagtccccctttgcatttcgtgaaatttcaccgggtgaaaggggaatcggaaagagagttctgcgattggtagtgcggatttctgtatttcgtagtaatttcggtgttcaaccttgaggagggctagtggttccagaaagcctggaatttgcgtctagttttggtttgcgcataacatgaccatcttgaataactgattggcaagtgagtttggtatggataaccctctatttagtcttttctttgtgcccatttgttgcatttgaagaatctaatgtggacatatggcattgctaacagaaacacagttttgaaagacattagcctgtgaatcgctcatctgtcatattcccaactaggatcctaatggctcaattctttctattacttttgttgatgatgatcttcttggaaactttactttttttagcctgacttaaagttgtccgtccattggctcggggcacatatattattgtcttttatttatgaatgaacttaggcacatgaccgggtttaagatgttaggatctcaatgtctaaaatgttctctagatgagaaaagtatcattttcacaaagcaatattatttgttgtgatggaatttactggtatcgttttcatacatgatgcttcctatgctcagatgctctacatcgaggcaacaaacatagatgatttatcaaaccatgttcaataaatagttgagactctgaaattcatagttattttttgcgggaaaagattcataccttttttttttgcggggagggaaaagattcatactgcttaacagtggtgattcttcacaatatttgtttcatgcgcataagcttatctctaatcatatcctttaaatttcactaaattgcaaatgtttggacaaaattatcacaaaacaacatatttacgccataataaactgtagatttagcatagaatatatcccgatactacagattgaagccattttgttgcaaaaatataagatttaaccccaattttatcacaaaactatatatttttaagatgtacacacatcaatcatgctaatctgaagggtattcagaaaattaaattccataatttcagaaaattaaattccataattttcattgacaaatttcatcacctgctacacattcatgagtatatttatgtgttaacccatgattatggattaaacgaatctgaagttttcgaggttgatagtcgtaataagaatttagcaaactacttatggaaccgttgattacttgagtttatcagtagattttttatggattagtttagttaatcatcctaacaaagatcattattggattacaacaactatttttattctgagttttatcctttgattctaaactcataatacttaacattgaggcttaatttactggatatgatatcaacattgataccttttcaaactcttaagttattatctttgttacattgtatacattgaaaattctgagctatagtgtaatgttgtgcatggcattagaatgtgctacttgttcaacttcaatgataccttcattttttttgcagttccttcaaatgccagatagcccactggagacagggtcataaaaatgaatgccgcccaccaagcactgatgctaatcatgatgatgtggctgaactttctgttgcaaaggaaaggaaaattgagcagacaagtgcttctgaagaaaacatagctgaaaccaacacggcagccaccgtgaagaatttaaatgataaaacaaaagatatgccctcagaagtacttgcttcggtggaggttcctgatgatgaccattctgtcagtgcggtcaaactccctcaaagttcttcacaagtagcttctcttggcagtagaaagacagaatcaaatatgaaacctacaactcctgttgaaaatggttcttacacaaaggacttagatgaggcgttggtgtgtagatttcaaccttctccaccaaagattagtggctctggaagtcttatcaacaaagagtccttaattgattccaagaagcaccaggattgctctcaaactagtaacagcaaaaaatatgcagataacaacaatgctcaagctgctctacctgttgcagtagaacctaaaacttccaggactgctcttcatgtggaagttggacactccaagacaaaagctgctggctcagacaacattggtgtgtcaaaaatggtgccatctgttttgactgttgataaagtttctcctgttcccggtggacgttctgttacacctaattcatcaaaaagggctgataatattgctgaaaggaattctaaaccatcagagaaatcaatttcaacagcaaatagcctggcaacatctctgaaaaaaattgtcaggcagcaaacagcaccaaaagttgtgaggcattatccatcagagccagtaagcaaaactgaactgctgtgtttatagttagtaggagttttctatctgctaatagttttatttttttcagacacattttccatatgagcttttcattaagctctatgaaaaggttgaattgcaaccgtttggtcttcataaccttggcaataggtaagttttggattatttctggatagttggaacacatatatgtgtttcttttttgcttatctcattattttagcatttctctaagatttataacttagctctccccatccttttgtggctatcaggctacatatcacagcttgcatcgaattttatgataatttgtggtgtttatgcaggaattagcttagtacagtgttctgtgttcaccctgtttcaccttgttttttcctctctcttgcagttgctatgcaaatgctgttcttcagtgcttaatgtttacccgaccacttacatcatatcttttgggagggcttcattcaaaaaattgtaatgttctattactgtgtttattacatcattgtttcccataaagcatttctttgagtaattatttaatatatcatactctctaggttccaaaaaggaatggtgcttcatgtgtgaatttgaaaaactcgttggggagggcagacaaggcaagattgctttgtcaccaactgggatactctctcatttgcctgacattggaagtagctttggtcctggtaaacaagaagatgctcatgaattccttaggtaagttattttttttaattgacagtttccagtttaagaagttaagaattagtttagcagaagttaggaacatttatgtgcctcaacgaggaatgcactgggggataagagcgggggtatcatatcacatattcatgcagaaaattaaagttaataggcctacttgaatatttgagtggtagccggagtgcttattaggttctgtggtctgtggtctgcatgaagaatctaatgagcaatgacaacctttttccctatcatctggattcggagttttggtggtggtttgcatcagtataatgttgtaatcctggtagaaacaacctaaacatattattttgggtatgaattggcattgccaatgtccttgttttgaattagcttagttaattgtgctcaaccagttcttttcaacaatagtgtctgatggaaccgcactacctgatctgttgtaggtacgccattgatgctatgcaatctgtatgcatgaaggaagccaggaaaagcggcactcatcggttacacgaagaaacaacacttatgcaattaatatttgggggctatctgcgatctaaggttttcttcacagttcacagaacaagtttaaatttctgttgtttgtactcaattacctgagatcagctgtgtaatgaagccccactcctattgactgcttttttccttcttctagataagatgcacaagatgtgatgctacttccgagcaacatgagcgtattttggatcttactgttgaaatagatggcgacatcagttcactggaaggagcacttgagcgatttacatctacagaagtcttggatggagataataaatataaatgcagcaggtttattacttagttgacctctatctttctctgccagctcttgctgttccttttgtgctcatatgcgttcatacagtgcacatcttttttgccactttccaaaatcctcaaaatgcttgtcactgagaccgtagtaagttaaggacctctattatagtgttgttgtaatttcaaaacgaattataggcacctcagacctgtagcctaagttcgtattcactttctgggatttagggatcgattttttttcccatgtcactaatcaggatttaagaggggaatgtgtaatccttagtgaaagggaaaaataaaaataaaaggataggcatgcattattgtttgtgaaagttggccaagagaggccttacaaaattaattcgtatcataacataatcaggtagcatgaggataccagtctaatgtgtagagtgtatcacgcaaagaccacgtaaatactgatgttatttgtgagcaccatgctggtgagctttctacttgttgtgaaactgaatgtgcattacatgggaactctgaattgcagagtgtttattaatttacggcgaagtatgagtgaccaactgtggtggttaaccgtcacgatagacttattgaaacgctatcacatgtttgatttttgaactaccgtatccaagctttctacaacaacatgagtagtgccttcagatctggcaaattgttgagatggaaaattgatttcccagaaattgtcatgtatatccatgcaaaagttgcatatattttagtcttgaaaacgagatatcttctcgagggacttttgaaaaagaattggtggaacgctctgttgcttgttaaaattgctttgcttctgtgaaataataggaaggtggatgtcataagacgtgtcctgttaatctagttctataataaatgtatcgtgttagagctgtaataactacatatttaatcacttctgtgtaacttgactgcttttgtgcctagtccctaatgctgatactcctaactctactatgtaatgtcagatgcaaatcgcatgagcgcgctaaaaagaagctgacaatatcggaagcaccaaatgtcctgactattgcgctgaaaagatatcaggtatcatctacaataagacctttttttttgcttttcttataatagcaacactgaaggaacttgtttacttattcaagagttcattgtttcatttatcctagttttgaataagtccaacaagcattgaaattgtatttagtgtttgactaatacttttcttctgtatctatacagtctggaaagtttggaaagatcaacaaagccatcagatttccagagaccttgaacttgcagcgctatatgagcccaaaagctgatgacacttcccctgtttacagcctgtatgcagtggttgtccatcatgatattatgaatgccgccttttctggtcattatgtatgctatgtgaaggacacgcatgggaagtggtacaaaacagatgacagtcaggtaaacaagctctttcaccatgtttttgcctatacctgcccaatgttttatcactggtaaaacactatttagtaaagccgattatgttcattcctggatcttccggagccttgttttcctattttaagtaatgaataatctttagctatgagagtactacttactgaggataatctatgtgttagtgaaagcatactgaacagaatacgcgacttcaaaaggcactgcaccattgttttgttctaactggagggtaaattgctttgttcaggtcaaacctgtatctctggaaaatgtcatgtcgaagtgcgcatacatgctgctctatgcaaggtagattctcttgtttcattagagagaagatcctttttgttatttttctttttgccacttgtttcaaggagcggaaaaaagagaagttctcatgaatagcagacactggcaattacttgtctgtgcttgcctggatctttatcaggacatatataaatcctttgtcaaccatttcaggtgttcaccaagagctccaagctctgtaaggccagcgctgatggctcaagatccagcacgtgtaaagaaggacaaggcaagggtaaattcaggacggtggcatggaggaggtcccatacaccaaggtggtcagatgtacgcagatcacatgacagatgatttgccccatacatatgacgagtttggacatggaccatattcgccagcagaatctcctagtccaagtgagagttcatcaattttcaccagttccgacacagggtcacatagcaccgacagcagtgaaagcactagaaactctaccagtgaggatatggaacgcctcatatttggtgatcaagtttcatactttgatggctctatgttcggacatggggaaaacggccgtatgacttattcccgatcaaagtctagcttgggtaccagttcatcgggtcaagaggtggatcagtataggcctgacgagcacaggcttcagggtgccagggagggttggaatcagggcgatgaaagttcttccttgtatactaaccaaagtaaacatcaatttagtagtaagttaacagaacaatataggaggaggttagatgggactgagcatgatcctggagaagccaatagtgttttattgaggagatcggctagggaaaggacggcccaaacattttattgacatgtggagggtttgggttgtagaggtataataatgtaggatgtattattaccccactgcaatgaaaaaggaaaaaatggctcagtttgtag</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0478500, RefSeq:Os08g0478500