Os08g0483200

From RiceWiki
Revision as of 13:05, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0483200| Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein| Version = NM_001068608.1 GI:115476953 Gen...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0483200

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001068608.1 GI:115476953 GeneID:4345863

Length

4998 bp

Definition

Oryza sativa Japonica Group Os08g0483200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:23959200..23964197

Sequence Coding Region

23961990..23962109,23962232..23962513,23963115..23963213,23963842..23964150

Expression

GEO Profiles:Os08g0483200

Genome Context

<gbrowseImage1> name=NC_008401:23959200..23964197 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:23959200..23964197 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctctccccctcgtccgcctccccccgctccccgccgcgcgccacccaccgctgctccgcctccccaagcactccgttccgcctcacggcggccgcgtctccttcgcctgttcgtccggtagccgcgccgccttcgctgcctgctgtgctagcgcctcggtggccccggcggcggaggcggaggcggtggtggaagagcccgaggggccgaggacgcggctcatcgcgcagaacatcccctgggactgcacggcggacgacatgcgcgcgctcttcgggaagcacggctctgtcgtcgatgtcgagctctcgatgtacaattcgaccagaaacagaggattggcgtttgtaaccatgggttcagaagaggaggctctttcagcactcaaccatctaaattcgactactctaaatgatagaacaattaaggtagactttactagatcgagaaagaagcagtatgttgtgccatcagctcccatgccgaagcacagcgtttttgtgggtaatctgacgtggagagtgagatctcgccatcttcgtgaattatttgcatcaaccccaggtgttcaatcagttgaagttgtcttccataccacaagtccgaggcgatctgctggttatggatttgtttccttttcctcaaaagaggcagcagaggctgccatatctaccttcaatggcacgaaattgatgggaagatccattaacgtgatgttcaaagatgacaatgccaaaaagaataaatctgctgcaccaacggaagaggatctgaaggcagaatcatctgagcagattgttagctaa</cdnaseq>

Protein Sequence

<aaseq>MALPLVRLPPLPAARHPPLLRLPKHSVPPHGGRVSFACSSGSRA AFAACCASASVAPAAEAEAVVEEPEGPRTRLIAQNIPWDCTADDMRALFGKHGSVVDV ELSMYNSTRNRGLAFVTMGSEEEALSALNHLNSTTLNDRTIKVDFTRSRKKQYVVPSA PMPKHSVFVGNLTWRVRSRHLRELFASTPGVQSVEVVFHTTSPRRSAGYGFVSFSSKE AAEAAISTFNGTKLMGRSINVMFKDDNAKKNKSAAPTEEDLKAESSEQIVS</aaseq>

Gene Sequence

<dnaseqindica>2089..2208#1685..1966#985..1083#48..356#gctctctgtgtcagatatccacacgtgccccgtacgccgccatcgccatggctctccccctcgtccgcctccccccgctccccgccgcgcgccacccaccgctgctccgcctccccaagcactccgttccgcctcacggcggccgcgtctccttcgcctgttcgtccggtagccgcgccgccttcgctgcctgctgtgctagcgcctcggtggccccggcggcggaggcggaggcggtggtggaagagcccgaggggccgaggacgcggctcatcgcgcagaacatcccctgggactgcacggcggacgacatgcgcgcgctcttcgggaagcacggctctgtcgtcgatgtcgaggtaaattgttttccgtcgccttatccttgtccgcttcagagagaaggaatgtgcggcgaatttggagtggcagtaattcgctgtgaccgcgccgcagtacgaagcaggcagcagcggcaccccacggttgctgagagcctgagatcctagtgccaagaggatggcgtgaatttgcacaagaacacaaatgcgtttagcgcgtcgatctgaacaccaatacaccatggtccatttgcctgcaagaatgtccaatttagactttaaactattgttcatttcaaagttggttctgctcaagtaggagccaggtatttgaaagactccaatggttctactaacgtggatgatgtgttcccttgccagcctcttctcgaagggtgaactgaagaatctgagtcatttttgtacttaacaatctagcagaaattttgggcaaaagaatcgggactcagtagtccaatgcaaactgcactatttgcagcttcatttccatgttttaagccttacatgttaatatcaggaggttaaccagctgacctggctatgatgcattcaaaaatggatctttctccattatttactgataaatggcatcattagtgattagttttattgcttgatttgctagctctcgatgtacaattcgaccagaaacagaggattggcgtttgtaaccatgggttcagaagaggaggctctttcagcactcaaccatctaaattcgactgtaagatctagattgttctggaaggaatgtctatttgtatcagacatactcttatttattttttgagtaaaatgcaccagcggtccttaaacttgtcagcaggtttcacttaggtccacgaatttgcaaagcgcacatcgaggtccctaaacttggtttattgtatcatcccggtccaaagccgcgtttgaccgtggtcttgcctatgtggcacgccacgtggacgatgacatggatttttattttattttttctccctttttccttctttttttctctttcttccttgtcgaaaagatgaaaatgcctcatacacgttatcgtccatgccatcgtattttcattaaagagaaaagagaaagaagaagggagaaaaaaaaatccatgtcatcgtccacatggcgtgccacgtaggcaagaccacggtcaaacgcgactttggactgggatgatacaataaaccaagtttagggacctcgatgtgcgctttacaagttcgtggatctaagtgaaacctgctgacaagtttaaggaccgctggtgcattttactctttatttttttgtcatctaactgtctttctactcattttctcttgtagactctaaatgatagaacaattaaggtagactttactagatcgagaaagaagcagtatgttgtgccatcagctcccatgccgaagcacagcgtttttgtgggtaatctgacgtggagagtgagatctcgccatcttcgtgaattatttgcatcaaccccaggtgttcaatcagttgaagttgtcttccataccacaagtccgaggcgatctgctggttatggatttgtttccttttcctcaaaagaggcagcagaggctgccatatctaccttcaatggcacggtaagtattctgaaatgtagcttagaaataaaatatagtacaagttttggtttgtgtacggcccaaattctaatacatgattgtgttttgatgctatttctgacctatgaaatatatcacagaaattgatgggaagatccattaacgtgatgttcaaagatgacaatgccaaaaagaataaatctgctgcaccaacggaagaggatctgaaggcagaatcatctgagcagattgttagctaagcatcaattgtcatgggaacacaccgagaacttaaatgattgaggattgcttaactgacattttcccagtaattactctaactcagtccttaatcttattttttttctaagtacattttcagccatcataacaaaagaaaagggcatcttccgaaaaaaataataatgatgaagcaacattttttctggttgtcatttctgatgacatgtctgtttatttatttgaatgctgaaaattatgtgtttttgccaagttgcattgctcactggttaggttttgtaaacataaaaactactatcatttcatattttcattacattatctctcctgaattattagtttagattttagcaagtgcttgtgccaatttgagcattttaaggtaccagttagttatacattactgtcactttgattgttgatatgatggaatgttgagttatagtttgggcgtcgttgacttaactatggttgtgtgttcctcctgaagatactgaattattggccaccactctctgctaatggtgaaagattctttttctcacaaggtctcccagctgctggtcagttttgctcattcaacgcctcgtgagttctatattacagcgttgtttatgctgtccacttgatatggatgacatatgacatttggaggtcagctttatgccatgagcacaaaatatatgtaagcttttcttgacacccaggttaattaattgtagatagagataagtctcaaggatctcagccgtaacccgatggatttagcgataatttgtttattgtgaaatatttggctgaaatgtataaatcaccgggataactttaaaggctaaaagctactactggtattgttttcagtctgtacttgtcttcgtttttatgtgaccggaagattgtagaggccgggtttaatctaatccattatctaaaataaatgtgaccggaagaactgtgacaactgtcaaattaatatatagccttcacatcagttccaaattgcacgcttggtgtgctatccttaaaggttgccgtgcagtacagacccaaggttcttcagtaaccaaacgggctagtacatctgcgtcacgagcggtccgacgaaacatctgtgagcaatactgaactgtgctgaatcaattattgtccagtcttccgtccccatctgtctattcttagctcagaaagtatcctctttaataatctgataatcttgtagtactaagcttgttgattgtgaatgtgctgcagatatttaggtccattctttttttagtggatttatgttggttctaaagatacgctgaacctccctcttaacctggacctagtcctaagagcaaagttaatagtatagccaactactagctacaattcatctataactaatctaatagttaattcatacaatagttgcttactatactattagtatatagtcccactgtcatatacacattatgtcttggagtccgtgctgcagcgggctacagaagctgttcttctctctcatcttttatcttattaaaatatgtttgtagctggctaatagtatgctattgtacctgctctaagagcacccgcaatggtaaagtaaggtgctctctataaaacatgtatatctcagtaatagattagattaatagtaaaccacctcaatagtatttctacatgggtatctatagctctctcatccattgtcttgtttttctctatagactctccaggttagtagatagctttactctctctctccatttaatctcttacaagtaggaaaatacgattatcttttatagagagcatatagataaccattgcgggtgctctaataacactagctaagcgcaaactccgagttatccatttcgcagcatttaccttgacggagtggacctgaaacgctaaacgcatgagcaaacgtgtacggaactcctttggtcaatcgttggattatccatctgaaactccttttgttttcgccgggatacccgtatgaaactcctgcatccgtcgccttcattcgcaccggtgataccgtactcatttggccggcagaccaaacatagtggattagtggacacttatgtgttgagaataccgtgccggtcctttgcgaaagcacatgtaacgcctaggaaagcaaggagcagaagcaatctgcttgtcttgtgtgcgacaacgaggccagtgcgttgtcctcgcaccaagcgaccgcctcgccgccgattgttccgtgcgacgccacaccgaaaccgaaccgggacaacctatttaatctttcaacaaatttaaaccttcaaatcttgaaaagttttcaaccaatggatgcaattcattttaaataaaataattaaaaagcatatcaaaaataataaatctagatataaaaagagttgtataatctaattccactatacttacgtagataaaacactgttttacgtaaaacgatatggcattaatgtataattaatagagttttaattatcataaccttaaaaatttatttatagcaactttcatataaaaagttttttaatgaaatataccgtttagcagtttgaaaaacacgtgattatctaaatttttatccaatttttattacataaaaaagacctaaatttacaagaatattctctctctccgtcccataatataagttattttggagagatatttattttggagagatatgacacaatctaatactaccaatctagagtaccagattattatgatacattcctttaaaattaattatattttgatataaaatcctacgaacg</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0483200, RefSeq:Os08g0483200