Os09g0123100

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Revision as of 07:17, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0123100| Description = Tetratricopeptide-like helical domain containing protein| Version = NM_001069135.1 GI:115478009 GeneID:4346428| Leng...")
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Gene Name

Os09g0123100

Description

Tetratricopeptide-like helical domain containing protein

Version

NM_001069135.1 GI:115478009 GeneID:4346428

Length

5998 bp

Definition

Oryza sativa Japonica Group Os09g0123100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:1726812..1732809

Sequence Coding Region

1727021..1727206,1727897..1727983,1729290..1729466,1729639..1729725,1729799..1729870
,1730622..1732496

Expression

GEO Profiles:Os09g0123100

Genome Context

<gbrowseImage1> name=NC_008402:1726812..1732809 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:1726812..1732809 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagcccaaggaggcgcccccgccgccgccgccccagtctccgtcctccaccgaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttccagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggagggcgaccccaaggtccttcacaatatggctattgcagaatctttcttggatggttgtcctgacccaaagaaattgcttgaaattctaggcaatgttaagagaagaagtgaagagcttgcctgtgcatctagacaacaaactgattctgccaatgggacaggaaacagtgtttcttctggatcaagagggagtggcattatacctctgatttctgctgcaaataatgcgacaacctatggggatgagtttgacacaaccataataacattcaacactgctgttatcctttaccatcttcacgattatgaatctgcactatctattttggatccactctaccgaaatattgaaccaattgatgagacaactgctcttcatgtatgctttctgttgttggatattacattagctttgcaagatgcatcgaatgccgcggatataattcagtacttggaaaggtcatttggagtagttagcgcaacaaaccagaatgaaaatgctaatacagctcagcagcagtcagctcaaccaaagccttctgcaaagattagcacacctccagattctgattcaaatacttgtgctggtggatctgaaaacctttcagcaggaaatttttctgatgatacacttgagtttgaatctttttactctaccttggatggtggtaatcagaacttgggcagaccaattttaaatgatttctcaagggcttcagctgatcttgctgccactgctgctgatttgaaagttagactgcaaatatacaaggtccggcttctgcttcttactaggaaccttaaggttgcaaagcgagaactgaaagttctgatgaacatggcacgtggtagggattcatcaacagagcttctcctgaaatctcagttggaatatgccagaggaaactatcgcaaggctgtgaagctgctgagcacacccaataatcggagtgaacaagcaatgctggccatgttctacaataatcttggttgcatactccaccaacagagatctattcaaacctcagtatggtgcttcagcaaagcattgaaatatagcttatcacttcgttcagagaaaccatgcaagctgaccgcaatatcgcaagacaaatcttgtcttatttcatacaactgcggcatccaacatttgatgtgcgggaaacctttgttagcagctcgctgttttcgtgaagccatgccgctcttgtgcaacaggtccctcttttggctccgttttgctgagtgtagcctgctagctctggaaaagggtatcctgacttcaagtggtgctacttcgtgcaatgatgagattgaagttgatgttatggggtcaggaaaatggcggcacttagttataaacccagtgaagccaagtcattcttcagaatctggggaggaggtaagtttggacaaatatggaaatctgatatcccttagatttgctagacagtgtctactcaatgcccaaattttattggatccctctacgaaggaaaatctggtgattgcatcaggcacagaggaatcgaatcaaacatcactgcaaggccagaaaggctcaggtcagaagaacaccactaatacagattccaaaccgcctggtccagcactaactaatgcaaatggagaacagaagggaatttcaaacttgaatgtcaccttgcagagctctcttgctttgtatgatgacatatgtagaaaagagaacctcaaaattaaacaagccatcttgggggaccttgcatttattgagttgtgtcttcagaatcacttgaaagctttgtctattgccaagttgctacagcagctgccagaatgttccaggatgtatgttttcctcagccatgtatacgcagctgaagcactttgtgcactgaatagaccaaaggaggctgctgagcaattaactgtttatttgagagatggcgatgatattgagttgccttacagcattgagaactgcgagaaagcccttgttgagaaagacagcgatggtgaagattcagttgctccggtagtcacaaaattgtcctcaggagaatctcagtattcagaaagcctcaagcctgaggaagctcagggtgttctttatattgacctaggcatgacagctgcagtgcagggagagcttgagcaggctaactatatggtaagccgtggcgttgccttgttgcccaacaaccccagggcagtgctagcatcagtttatgtggaccttcttcaagggaaggcacaagaagcaatcgccaagttgagacgatgtagaactgtgagatttaggaggcatagtgtagcagtcagcagttaa</cdnaseq>

Protein Sequence

<aaseq>MEPKEAPPPPPPQSPSSTEEEGMLSVTAAMARDAAVLFQSRRYA DCAEVLAQLLLKKEGDPKVLHNMAIAESFLDGCPDPKKLLEILGNVKRRSEELACASR QQTDSANGTGNSVSSGSRGSGIIPLISAANNATTYGDEFDTTIITFNTAVILYHLHDY ESALSILDPLYRNIEPIDETTALHVCFLLLDITLALQDASNAADIIQYLERSFGVVSA TNQNENANTAQQQSAQPKPSAKISTPPDSDSNTCAGGSENLSAGNFSDDTLEFESFYS TLDGGNQNLGRPILNDFSRASADLAATAADLKVRLQIYKVRLLLLTRNLKVAKRELKV LMNMARGRDSSTELLLKSQLEYARGNYRKAVKLLSTPNNRSEQAMLAMFYNNLGCILH QQRSIQTSVWCFSKALKYSLSLRSEKPCKLTAISQDKSCLISYNCGIQHLMCGKPLLA ARCFREAMPLLCNRSLFWLRFAECSLLALEKGILTSSGATSCNDEIEVDVMGSGKWRH LVINPVKPSHSSESGEEVSLDKYGNLISLRFARQCLLNAQILLDPSTKENLVIASGTE ESNQTSLQGQKGSGQKNTTNTDSKPPGPALTNANGEQKGISNLNVTLQSSLALYDDIC RKENLKIKQAILGDLAFIELCLQNHLKALSIAKLLQQLPECSRMYVFLSHVYAAEALC ALNRPKEAAEQLTVYLRDGDDIELPYSIENCEKALVEKDSDGEDSVAPVVTKLSSGES QYSESLKPEEAQGVLYIDLGMTAAVQGELEQANYMVSRGVALLPNNPRAVLASVYVDL LQGKAQEAIAKLRRCRTVRFRRHSVAVSS</aaseq>

Gene Sequence

<dnaseqindica>210..395#1086..1172#2479..2655#2828..2914#2988..3059#3811..5685#atcggccttcctcagttggcaactcgctccacatcccccgtcgagtctcgctctcgccgcgccgtcggttccaaaccctagctctccctcccggccccccaaatcctgccctccggagctccgattcaccgcctcgccgcgcgattccggccctaccctggcgccctgcgcccccgattagcccccatcctgctagatccacccgcacaatggagcccaaggaggcgcccccgccgccgccgccccagtctccgtcctccaccgaggaggaagggatgctctccgtcacggccgctatggccagagacgccgccgtgctgttccagagccgccgctacgccgactgcgccgaggtgctcgcgcagctcctgctcaagaaggagggcgaccccaaggtagccgattcgccatctctgcttcggggtgattagttgggttaggtccttcctcgctaaacgacaaaatcttttaccgaatccatctgcttctctaggttatatcttgcttgctaggtgttcgttagtggagctgcttccgcagcattatgggttgagctcgtggggtgagttgcgagtttgcgtatgttaatctaggcagttgggtgcatcttgcctccgtgtttgcgtagatgtctgcatatttcacctgtatgtgcgttatggtctgtgtgtgatatgcaggtgggtgcatcttgaattattgggtttgtgtttgcatgcttgttaatttgtatttcatcagtttcatgttgtgtttgatgcatgcgtagacatggatgtccacactggtatgtgtcacccagtatgtgcttctcctcgtgcatgattctaattacttatcttgtccatttcatgtatagggcatgatctgtttaataaggttataagtctgaaagaacaatatgcatacaaataggaaaaaaaacaattacccgatatctgtgtatactgcatattatgctcttagatgcttttctacggtggttatcttgaactggtagcttttccactatatcttgataaagagatgatactctgatcatgtattattttggcatctgatattgcatttttataatctttcaggtccttcacaatatggctattgcagaatctttcttggatggttgtcctgacccaaagaaattgcttgaaattctaggcaatgttaaggttagtgaatttgcattagtttgtttgacttttgatgttcatatttccattgaggctatgtactagaaatatccattcttttgtcagtagagaactctacagctaagttactgtttgtacaggagtttctgattttttttgggtgaaatttctgttttccaaatgtacctaaaattttcttggcaacaataattcaaacctaaaactatgtttactttttttttcttatataaattcattccaattgtaaatttggttatacaagaaatgatataattttgatgtttgtcactttagtccaatcatttagttagtgtcaattatatgttactaactatacttagttctcaaaaggacagtcttcttgttctgccctgttttccttcatccattcgccgtgggtcttatcattttgcacaactcatctatgtttcagttccaatttcaaatttgttcttttccttcttctgggttgatgaagatatttgtcacatgctacatgcacgaaaatttattttgttttgtgtatagtaaactttaacatctacattttatttgtgtttgttgtatgtgtatatgttgtatatggtaaaagcatccctcattagtcaggagttatgtgatgcattaatgcacaaaacagaaggcatataacatgctacatgttgagagtagtcataatatcttgacttgcgtgcattttgatcgacatctatcagtgaggggctcaaaacttatatttagtcatgagccatcatttcttcttttttgaatatatctggacctaacggtagtctttgtattccacaatttacgattcttcattgatgggaagtaagaaacaatattacaaatgctggttttgtcaaaggtttctaacttttatgtaaatgctgttaatgctgaccaaagaaaaccatatattcttttttgtagtggatgaacttataactatatttttttcagatgtgatatcatcactatatgtttggaactcacattaggttctcagactccatttttattcgtcattcaagttgcgcatataaatatctaatattatgcagcatgccagttattcagtcatttacacaactgcacacatatcactgtaacgtgttatggtcgtcccctaaccacttacatctacttatagcattggagccatctacttttgtgtggttttaagccttaatttatggtgcctgttttgatttctcattttctcttattatgtcattgttttattctcctgatttaataattatttacgaaaattctaatgttccaccttacatgcatccagagaagaagtgaagagcttgcctgtgcatctagacaacaaactgattctgccaatgggacaggaaacagtgtttcttctggatcaagagggagtggcattatacctctgatttctgctgcaaataatgcgacaacctatggggatgagtttgacacaaccataataacattcaacactgtatgttcttttcttttgcaaaagtaattatttgattgtttgatgtttctggtctatggcttgcattaattgtagtactgctttagccaatcaaccatggtaagcattgtaattggtgtgagctttaactgaagaggtgattgatttgtttatggcatttttgaatttgcaggctgttatcctttaccatcttcacgattatgaatctgcactatctattttggatccactctaccgaaatattgaaccaattgatgaggtattattagttataagatgcttaacttggaaaccaggttgttacattttctaatatttcttcaatactgcagacaactgctcttcatgtatgctttctgttgttggatattacattagctttgcaagatgcatcgaatgccgcggtaagttttaacatctcagtatatcgtgagttgatgctacaaatactacattagctttgtgggcttatgggtattttgtcaatagattctcctgaaaatgcaatacatgctgtgtctcgtctgtttgatgcataaaaattaaaaaaaatgtcttcctccttggcattggtgcatatgccaatatttaccacttatgatgttttacattcattgttatctacattttttcccaaaaatatgctccatggtgtcaaaatacccttccataactagttcccttttttgtcaaattttgactggaatgcatttcgtgcaatttttccctatatttatttaatattacaaaatagaactaccatatattgttttctgttttgtcctaaattgcagtattaacacaacaatccaagatgaccaaattctcatgttttcatatgttaattttagaagtaccatgcgtgaacactcattgtaacaaaaaagaagtgattcaatgcaaaaaattcacatttacctgttctgaacgattttagggcttccattattcacttttatccattccaaatgatgattatgcctttccacgtgagaattactgaactcaagtgcctaagattgtcagatatagttgtgatcttaacttgtatggcgaaccgtaccatttttgtttgtcctttttattcaaagttgcagcattagctcttgtataaagcatcttattcaactgcatgcatcacatatgtttgtacaggatataattcagtacttggaaaggtcatttggagtagttagcgcaacaaaccagaatgaaaatgctaatacagctcagcagcagtcagctcaaccaaagccttctgcaaagattagcacacctccagattctgattcaaatacttgtgctggtggatctgaaaacctttcagcaggaaatttttctgatgatacacttgagtttgaatctttttactctaccttggatggtggtaatcagaacttgggcagaccaattttaaatgatttctcaagggcttcagctgatcttgctgccactgctgctgatttgaaagttagactgcaaatatacaaggtccggcttctgcttcttactaggaaccttaaggttgcaaagcgagaactgaaagttctgatgaacatggcacgtggtagggattcatcaacagagcttctcctgaaatctcagttggaatatgccagaggaaactatcgcaaggctgtgaagctgctgagcacacccaataatcggagtgaacaagcaatgctggccatgttctacaataatcttggttgcatactccaccaacagagatctattcaaacctcagtatggtgcttcagcaaagcattgaaatatagcttatcacttcgttcagagaaaccatgcaagctgaccgcaatatcgcaagacaaatcttgtcttatttcatacaactgcggcatccaacatttgatgtgcgggaaacctttgttagcagctcgctgttttcgtgaagccatgccgctcttgtgcaacaggtccctcttttggctccgttttgctgagtgtagcctgctagctctggaaaagggtatcctgacttcaagtggtgctacttcgtgcaatgatgagattgaagttgatgttatggggtcaggaaaatggcggcacttagttataaacccagtgaagccaagtcattcttcagaatctggggaggaggtaagtttggacaaatatggaaatctgatatcccttagatttgctagacagtgtctactcaatgcccaaattttattggatccctctacgaaggaaaatctggtgattgcatcaggcacagaggaatcgaatcaaacatcactgcaaggccagaaaggctcaggtcagaagaacaccactaatacagattccaaaccgcctggtccagcactaactaatgcaaatggagaacagaagggaatttcaaacttgaatgtcaccttgcagagctctcttgctttgtatgatgacatatgtagaaaagagaacctcaaaattaaacaagccatcttgggggaccttgcatttattgagttgtgtcttcagaatcacttgaaagctttgtctattgccaagttgctacagcagctgccagaatgttccaggatgtatgttttcctcagccatgtatacgcagctgaagcactttgtgcactgaatagaccaaaggaggctgctgagcaattaactgtttatttgagagatggcgatgatattgagttgccttacagcattgagaactgcgagaaagcccttgttgagaaagacagcgatggtgaagattcagttgctccggtagtcacaaaattgtcctcaggagaatctcagtattcagaaagcctcaagcctgaggaagctcagggtgttctttatattgacctaggcatgacagctgcagtgcagggagagcttgagcaggctaactatatggtaagccgtggcgttgccttgttgcccaacaaccccagggcagtgctagcatcagtttatgtggaccttcttcaagggaaggcacaagaagcaatcgccaagttgagacgatgtagaactgtgagatttaggaggcatagtgtagcagtcagcagttaagataggaccggtcgcccttttgatgatttctgtagttgataattgccatttcatcttttggaccctgacccccaggtggatgatcgaagatcgtaatgttcttgtgtgtaccatacataagaagaagaaaaactgtagatctccccccctttccccactttaaaagctttccctgattcaggggtgtaatgtgtcggagttaatatcgttttagttttgccgctctttggacagaagagggatgaaatagtttacgatatatgtgcttattgttcgggaaagcaacgtgcaaaatcttttgaacccgatgacc</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0123100, RefSeq:Os09g0123100