BGIOSGA000111

From RiceWiki
Revision as of 17:51, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA000111

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000111, complete gene.

LocusTag

OsI_05193

Ensembl Transcript ID

BGIOSGA000111-TA

Ensembl Protein ID

BGIOSGA000111-PA

Length

4652

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:45808608..45813259

Sequence Coding Region

45812892..45813259,45812068..45812206,45811311..45811464,45811083..45811160,45809718..45809815
,45809469..45809631,45809339..45809395,45808835..45808896,45808608..45808754

Genome Context

<gbrowseImage1> name=IndicaChromosome01:45808608..45813259 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:45808608..45813259 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCGCCACCTCGCCCGCCTCCTCAACAACCGCATCCTCCTCCCCGCCTCCTCCTCACCCGCGGCCGCCTTCTCCAAGCGTACCTACGCCCGCCGCACCAAGCCGGCTCCGCCGACCGCCGATGCGGCCGCCCCCGCCGCGGTGGAGGGGGAGGGGGAGGAGGAGAGGGGGCCGGGCTGGCAGAGGGAGAAGCTCCCCGCCGAGATCCCCCGGCCGTCCACCATCGCGTTCCAGCCGCGCGTCGCCAACGCCGTGCGCCTCGTCGGCACCGTCGGCGCGCCCGTGCAGCTGCAGCGGTTGCCCGACGGCCGGTTCTCCGCCGTCTCGGTGCTCGTGCAGGACCGCCACGCTGATTACCCCAAGTTCTGGATTCCCATAATATTCCAAGATGACTTGGCACAAGTTGCCGCGTCTCACTTGCAAGAGAAGGACCATATATATGTGTCTGGGCAACTAACTGGAGATATCCCACCGACCAAACTTATGGATGGCCAAGCAAACATTCAGGTTTTAGCCCAAATGCTATCATTTGTTGGTGGTAAAGCAGTTCAAGCAGATAGCATGGTGGATGAAGAGGAGGGATTTATGCAGATTGTTGAGGCTGAAAAGAAAGTTGAAACTAAAAAATTCATCCCTAAATATCCACCACGCACAGTTTCAGGGGCAATGGGCATGACTAACAAAGCAATTTCTTTCAGCCATGCACCTTTATTCACCTGTCCACCAGTTTCACAATATTGTTACAGAAACAAGGATAAGCTAAACAAACTCTGGAATGATGTTGTGGCTAATCCTCAAGACTGGACTGATAACCGACCTCAGAAGAAAAATGGATCTATAAATGCGAAGTATCCTGACTTCAAAAACAATGTATCAAAAGAGGCACTTTGGCTTGACACTGCACCAAAAGCAGTGCTGGAAAAGTTGGATGATTTAGTATTCAGTAGTGATTTCAGTGCTGCAAAAAAATACAGGCCTTTTGGTGGTGACAAGGGCAATGGTACAAACTGGGCAAAGAAGAGTCAAGATTCTTCTTCTATCTCAAAACAAAAACAAGGGGAGTTGTGGCAAGATCTGGTGGACAATCCTGGAAAATGGTGGGATAACCGATCAGATAAGCCTTCAATAAAATATCCTGATTTCAAGCACAAGGAAAATGGCACGCCTCTGTGGATTGGATCCCAGACACCTAAATGGGCTATAGATGCGCTTCCACCGGCAAAACCATCCAAGGCACCTTTTAAGCAAGAGACCTTCCTCTCATGA</cdnaseq>

Protein Sequence

<aaseq>MRHLARLLNNRILLPASSSPAAAFSKRTYARRTKPAPPTADAAAPAAVEGEGEEERGPGWQREKLPAEIPRPSTIAFQPRVANAVRLVGTVGAPVQLQRLPDGRFSAVSVLVQDRHADYPKFWIPIIFQDDLAQVAASHLQEKDHIYVSGQLTGDIPPTKLMDGQANIQVLAQMLSFVGGKAVQADSMVDEEEGFMQIVEAEKKVETKKFIPKYPPRTVSGAMGMTNKAISFSHAPLFTCPPVSQYCYRNKDKLNKLWNDVVANPQDWTDNRPQKKNGSINAKYPDFKNNVSKEALWLDTAPKAVLEKLDDLVFSSDFSAAKKYRPFGGDKGNGTNWAKKSQDSSSISKQKQGELWQDLVDNPGKWWDNRSDKPSIKYPDFKHKENGTPLWIGSQTPKWAIDALPPAKPSKAPFKQETFLS</aaseq>

Gene Sequence

<dnaseqindica>1..368#1054..1192#1796..1949#2100..2177#3445..3542#3629..3791#3865..3921#4364..4425#4506..4652#ATGCGCCACCTCGCCCGCCTCCTCAACAACCGCATCCTCCTCCCCGCCTCCTCCTCACCCGCGGCCGCCTTCTCCAAGCGTACCTACGCCCGCCGCACCAAGCCGGCTCCGCCGACCGCCGATGCGGCCGCCCCCGCCGCGGTGGAGGGGGAGGGGGAGGAGGAGAGGGGGCCGGGCTGGCAGAGGGAGAAGCTCCCCGCCGAGATCCCCCGGCCGTCCACCATCGCGTTCCAGCCGCGCGTCGCCAACGCCGTGCGCCTCGTCGGCACCGTCGGCGCGCCCGTGCAGCTGCAGCGGTTGCCCGACGGCCGGTTCTCCGCCGTCTCGGTGCTCGTGCAGGACCGCCACGCTGATTACCCCAAGTTCTGGTACGGCCATCGCTTCCCCTCCCTATATCTATCTATCTACGCACTGCGTCACTGTGATCGGTCGGTACTTGGCGGTGTTTGGGACTGAAGGAGGCTGAAAATGCTGTAGCACAAACCGCCTATGCCTTTTTGTTGCATGGTTTTGTGCCATTTGTTTCCCAGACGAAGTAAACTATGTGTAGAATTGGGGGTGAAATATGTAGAATGGGTAAAGTATTTTATTTCAGGACTGTTTGGTTTGTGTTTTGGTACCGTCAAACAGTTTGGTTTGGTATGATTGGCAAAGTTGCTGACATCAACTTTGGATGGAACGGAAAATATCAATATCTTCTAGTACCTCTTTGTTTTTTCCCTGCAAAATGCATTGATAGTGCATTTGCAGGGATTTATCGTAATAACAATTTCCTGGAAGACATTATCGGGCTAAATGTTTGGCAATGGAACATGGTCAACCTTTGTTGCTATTATATCAAGTCTAAAAATGCGCGCAAATTTTATCATCAGTGATGGCTAAACTTGATCACGCAGGTCCAGAAAGTTCCAGCGATCAGCACACAGTAGCCTTGCCTTGTTCCTAGTGTGTATTTGACTTGACATGTTCGATTCTATGGAAGGAAACACAATCGTTTGCAAGTTCAGTGTTCACTTTTCTTGGATACCTCCCTGACCGACTTTCCATTTTCAGGATTCCCATAATATTCCAAGATGACTTGGCACAAGTTGCCGCGTCTCACTTGCAAGAGAAGGACCATATATATGTGTCTGGGCAACTAACTGGAGATATCCCACCGACCAAACTTATGGATGGCCAAGCAAACATTCAGGTATGTAGCTACTGGACATTCTTTGTTGAATAATATTAGTGCCAGGAAATATAATGCTGTTCTTCTTCCGTATAACACATGATAGAAACTTCCTATTTGTCTCTTGTACTTGGCCATACTGAAACCTTTTCAGTTCATTCAATATTAGAAATGACATGTAATCAGATCAGACGATGTCTACTCTCTTTTATTCTTGTGTTCACAAGTTTACCTTTAACCAGCTACTACTTTGCTTTTGCATCTTGTGGTAACGAAAATACTACCAATTATATTATAAGTTGATAGAATAGACAATCTAATGCGAGATATGCTGCTCAGAAAGTCGAGTGGGTCTGTGGGCTATGTTGTGTATCATCTCTTCACAATATTCTTTTTGCTAACGTTGTTATTTTTTTTCTCTATTTAGTACTTTCATGAAGTCTTTCCTCAAACAGAAGAATAAATCTTGCAGCTCTTTTTTTTTTCCTCAATAGTGGATGGATTGTTTTAAAGTGAACAATTCTTATTTCCCCGCTTCTTTCTCTTGCATGATATAATTATGTTTCTTATTTTTTTTGTTTATATGATTGGCATAAAATATTTGTACTGATTAATATATTCCAGGTTTTAGCCCAAATGCTATCATTTGTTGGTGGTAAAGCAGTTCAAGCAGATAGCATGGTGGATGAAGAGGAGGGATTTATGCAGATTGTTGAGGCTGAAAAGAAAGTTGAAACTAAAAAATTCATCCCTAAATATCCACCACGCACAGTTTCAGGTGCTGTATTCACTCCCAACTAAATTCATCCCCCCTGCTTCATTATGTCTTAGTTTATCTTCGTCGCGTTGTACCACTGAGAAAATTGTAATAGTGCTTCATTATTGTTCACTATACTCTTGTTAGTTTATTTCTTTGGTTGTGAATTAGGGGCAATGGGCATGACTAACAAAGCAATTTCTTTCAGCCATGCACCTTTATTCACCTGTCCACCAGTTTCACAATATTGTGAGTCTAGTCAATGAATTTGGGCACCCTGACTAGTAAATTTGTTAGAGAACTGCACAATCGGTCATCCTTTTTTTTAATACCAAATTTTGACCCAAAACAGTAGGGGATCTTCCTTTTTCTACCATGCAGCTCGGATCAGGGATAAGCCACTCTTTTCACTTTGGACCAGATGTGTTTACAAAATGTTCCCCTTCGGACCAGTTCTTCCTCTGGCTCTCCTCTTTTCTGTCACCCGCAACCTTGCTGCTCCAGTGAGCTGGCCCCCATACTCAAGCATGAGCTTGTGACTATCAAGAAGCAGAGGAAAAAATGGGGATGGCAAAGAAGTGAACCTATTGTAATAGCGTGTGGTGTCGGCGCTGCTGGAGCTCACTGCACATTAGTGTGAGGGCAGGGGAGAGCGTACTTACCAACATGGAAATCTCAATATAGAAGGGAAGAGAGTGGAGGTCGGACAGCTAGAGGAAGAACAGGTCGAATATTTTTCAAAGATCTCTGGTCCAAAGTGATGTGCTGCTTACCCTGGTCCAAGCTGCAAGATTGGTAAAAAAGGGTGCTCCAATGTGCATTTACTCAATTTTTAATCTGTATCTGTTATTTTCTGAATGAAACTTGCAAACATTAGTAGTTTTAACTATTTTTTGTAGGGTAAATTGTTTAGGTCTATCTTGACACTTAAACTCAAACTGAAGGAAACCTTTTTAGACAACTTTTGTGATGCAAAAGTTGGTGTGCTTGAAATTTTGAGCAGTTGCTCATCAGTACTGAATACTGATTCACACACAGAGTTTAACTAGTGTTACAAAGAATGCAAGACTTTAGGGTTTATTCGGTTTGGAGGAAATTTCAAATCATAGGAATAGGAGAAGTGGAGGAATAGGAATGCATGAACACACCAATACATAGGAGTTTTTCCAAGAGTTTTGAGTGGATGGAAAATTTCGTATGTTTTCTCTCTACAACTTGTAGGAAAGGAAAAATTTCCTTTGGTTTTCCTATACTTACATTCCTACAAACCGAATGACACTCATAGGAATTAATACTTAGGATCCAATACTTTTGTTTTCCTCCAAACGAGCAAGTCCTTACAACTCACACCAACAATGTATGAACCCCAGTATATACAGACAACATATTGATTGCACTTTTATAGTACACAAGAGGGACATATAGTAAAGATTTCTTATATTCAATTTTTTTCAGCTATGCTTTCCATTGTAAATGAAACTTTTTGCTGTTTTTTATGTTTAATTATATTTCGCAGGTTACAGAAACAAGGATAAGCTAAACAAACTCTGGAATGATGTTGTGGCTAATCCTCAAGACTGGACTGATAACCGACCTCAGAAGAAAAATGGATCTGTGAGCATATTATTCATAAAGTTTGCTTTTGGTGAAATACGGCCTGTCAGCTACTACAACTCTCACCACTTCTCCTTTAAACACAGATAAATGCGAAGTATCCTGACTTCAAAAACAATGTATCAAAAGAGGCACTTTGGCTTGACACTGCACCAAAAGCAGTGCTGGAAAAGTTGGATGATTTAGTATTCAGTAGTGATTTCAGTGCTGCAAAAAAATACAGGCCTTTTGGTGGTGACAAGGGCAATGGTAAAAATTTAACCGTTTGACTTTCACGTCATCTATTTTTATTTCTGGATAGTACTACAAATAGCCTGTACAGGTACAAACTGGGCAAAGAAGAGTCAAGATTCTTCTTCTATCTCAAAACAAAAACAAGGTTTGTATAAGAATTGTTCGTTGTTCACTGGAAGTATTTTACCATATGATGAACACAATAATTGTTTCTGGTCAATCCTTTACATAAGTACCCACTTTCATAATTTGTCCTCGTAAATAAACTGCTCAGTGTCATCTGTTTATATTGCTATTCTGCTTGAGCTCTCATTGAGTCTCCAAGGCATTAACACTTCTCTGCAAACTATTCTGTTCAAGTGCCTGAAATATGTACGAAGATTAATGTATTTTTGCTGTTTTTTATACTCGATAGCTGTATATTTGGTTATCTGTTATACTGCATAATGTAGGATAATATCATGTTTGTCTGCTTCAATTAGTGTTTATGATGTTTTTCTTATCAATATAAACCTTTTTCCCTACAGCAGAAGTTGATTATTTGCATGCAACCTACCTTTTGTGATGGTGTATTGTTTTGTTTCCAGGGGAGTTGTGGCAAGATCTGGTGGACAATCCTGGAAAATGGTGGGATAACCGATCAGATAAGGTGAGTCTCAAAAAACTCGTTTTATGTTTATTATTCCCAGATTGGTGCTAAACATTGCAGATATCTGGTTTGACATGCAGCCTTCAATAAAATATCCTGATTTCAAGCACAAGGAAAATGGCACGCCTCTGTGGATTGGATCCCAGACACCTAAATGGGCTATAGATGCGCTTCCACCGGCAAAACCATCCAAGGCACCTTTTAAGCAAGAGACCTTCCTCTCATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000111