BGIOSGA000359

From RiceWiki
Revision as of 18:03, 20 July 2012 by 124.16.129.48 (talk)
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Function

Please input function information here.

Expression

Please input expression information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this gene

Please input related labs here.

References

Please input cited references here.

Structured Information

Gene Name

BGIOSGA000359

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA000359, complete gene.

LocusTag

B1099D03.28

Ensembl Transcript ID

BGIOSGA000359-TA

Ensembl Protein ID

BGIOSGA000359-PA

Length

4342

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:42260044..42264385

Sequence Coding Region

42264320..42264385,42260044..42264237

Genome Context

<gbrowseImage1> name=IndicaChromosome01:42260044..42264385 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome01:42260044..42264385 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGTATCTCCGGGTGAAATGTCAGTAAGCAATCCATTACGCTTCCAAGGCTTTCCTTGTAATGTGGGAAAAAGAAATGTTTTCATTGCTGCAAGGAGTTCTGGACTGGGAAGGTCGCGAATTGCTCAACAGTGCTTTCAGCAACATCATATTTGTTATCCAGGTGTTCGAAGAGCTTCAGTTCCTAATGTCCGAATGCTGCCAGCTCCTGGTGCTTTGGTTTCCAGGGGGGTTGACAGTTCATTGGTTCCCAAAACTGGTAATGCATCAGAAGCTGGAGTTATTCAGTTATATCGTATACCATATCTTCAAGAGAGTGAAACAATTGAGCTACTCAGGCAAGTGCAAGCAAAGGTTTCTTCTAATATTGTGGGTATAAAGACTGAACAATGCTTCAACATTCAATTGGACAATGCATTAACTCCAGAGAAGCTTGCAACACTTCAGTGGCTCTTAGCAGAAACCTATGAACCTGATAAGTTACAAGCACAAAGCTTTTTGGAGGAGGAAATCTCTAGGAGCCCTTATAGTGTCATTGTTGAGGTTGGTCCCCGGATGACTTTTTCAACAGCGTTCTCGACCAATGCTGTCTCAATATGTAAATCTCTCTCATTGATGGAAGTAACTCGCTTGGAGAGATCAAGGAGATACCTTTTGTGCCTGGATCCTGGCAATGGTCCACTTGATGAAAGCCAGCTTAATGACTTTGCTGCTTTGGTTCATGATAGAATGACAGAGTGTGTTTATCCTAACAAGCTCACATCATTTCATTCAGATGTAGTTCCTGAACCTGTCCGTATTGTTCCAGTCATTGAAAGGGGAAGGGAAGCTTTGGAAGAAATAAATGTGAAGATGGGACTTGCTTTTGATGAACAAGATATCAAGTACTATACCCACCTCTTCAGAGATGACATCAAAAGGAATCCAACCACTGTTGAACTTTTTGATATCGCACAATCCAATAGTGAACACAGCAGGCATTGGTTTTTCAATGGAAAGCTTGTGATAGATGGAGAAACCATGCCGAAAACCTTGTTTCAGTTAGTGAAGAGTCCCCTGAAGGCCAACCCCGATAATAACTCTGTCATCGGATTCAAGGACAACTCAAGTGCAATAAAGGGATACCCAGCAAATCAGCTGCGCCCAACAATTCCAGGCTCCACTTCACCATTATCTGTTATGATGCGTGAGCTTGATATTTTATTCACAGCAGAAACCCATAATTTTCCATGTGCTGTGGCACCTTACCCAGGAGCTGAGACAGGTGCAGGTGGTCGCATAAGAGACACACATGCCACCGGAAAGGGTTCTTTTGTTGTTGCTTCTACTGCTGGCTATTGTGTTGGTAATCTCCGAATGGAAGGTTCATATGCACCCTGGGAGGATCCATCCTTTTCATATCCGTCGAATTTGGCCTCCCCTTTGCAAATTCTGGTTGATGCTAGCGATGGTGCTTCTGACTATGGGAATAAGTTTGGTGAACCTCTAATTCAGGGCTTTACTAGAAATTTTGGGATGAGGCTGCTTAATGGGGAACGGCGTGAGTGGCTGAAGCCAATAATGTTTAGTGGGGCAATCGGGCAAATCGATCATGCACACATATCTAAGGGGGATCCAGAGATTGGGATGCTAGTTGTGAAGATTGGTGGCCCAGCATACAGAATTGGTATGGGTGGTGGTGCTGCCTCAAGCATGGTTAGTGGACAGAATGATGCAGAGCTCGATTTCAATGCAGTGCAGCGTGGAGATGCTGAAATGGCACAAAAACTATATCGTGTGGTCAGGGCATGTGCAGAAATGGGAGAGAGCAACCCCATTATCAGCATTCATGACCAGGGTGCTGGAGGAAATTGCAATGTAGTGAAGGAAATTATCTATCCTAAGGGTGCTGAAATTGATATACGATCAATTGTTGTTGGTGATCATACATTGTCTGTCTTGGAGATATGGGGTGCTGAGTACCAGGAACAAGATGCACTTCTGGTGAAGCCTGAGAGCAGAAGCCTGTTGGAGTCACTTTGTGAAAGGGAAAGGGTTTCAATGGCTGTCATTGGTACAATTGATGGATGTGGAAAGATTGTTTTGATTGACAGTGCTGCTATGGAGCATGCCAAGATAAATGGCCTTCCTCCTCCAACCCCTGTTGAGGATCTTGAACTTGAAAAGGTTCTAGGAGATATGCCCCAAAAGACCTTTGAATTCAAGCGAGTGTCTCTAGTCAGCGAGCCCTTAGACATTGCCCCTGGAGTAACAATCATGGATGCTCTGAAGCGAGTATTGAGTCTTCCGTCCATATGTTCTAAGCGTTTCTTAACCACAAAAGTTGACAGGTGTGTGACAGGTCTTGTTGCACAACAGCAGACAGTTGGACCTCTCCAACTTCCTCTCGCAGATGTGGCTGTGATTGCACAGACATATACTGACTTGACAGGTGGTGCCTGTGCCATTGGAGAACAACCAGCAAAAGGTTTACTTAATCCCAAGGCCATGGCAAGACTTGCTGTTGGGGAGGCCTTGACTAATCTGGTCTGGGCTAAAGTTTCATCACTTTCTGATGTCAAAGCAAGTGGTAACTGGATGTATGCTGCAAAGCTTGATGGAGAAGGTGCAGATATGTATGATGCTGCTGTTGCATTGGCTGACTGCATGATTCAACTTGGTATTGCAATCGATGGGGGAAAGGACAGTCTTTCCATGGCAGCTCAATGTGATGGTGAGGTTGTCAAGGCTCCTGGAAATCTGGTCATCAGTGTTTATGTGACATGTCCTGATATAACATTGACAGTAACTCCTGATTTGAAGCTTGGCAATGCTGGAGTTTTGCTGCACATTGACCTGGGCAAAGGAAAGCGCAGGCTTGGTGGTTCTGCTCTTGCACAGGCTTTTGATCAAATTGGAAATGACTGCCCAGACATTGATGATGTTCCCTACTTAAAGAAAGCTTTTGAGGCCGTTCAGGAATTGCTTAGTCAGCGCCTTATCTCAGCTGGCCATGACATTAGTGATGGGGGTCTTATTGTGAGTGTTCTTGAGATGGCATTTGCTGGTAATTGCGGTGTTAAGCTGAACATTGACTCAGAAGATTCGGGCCTTCTTCAAGCACTCTTTGCCGAGGAGCTTGGCCTTCTTCTTGAAGTGCACTTGAAAGATCTCAGTGTTGTGAAGCAAAAGCTTGAAGCAGGAGGCATTTCCGCTAATGTAATTGGACAAGTTACAGCATCACCAGATATTGAGCTAGTTGTTGATGGCAGGCTGCATCTCAAGGAAAAAACTTCAGATCTCAGGGATATCTGGGAGGAAACAAGCTTCCAGCTTGAGGGGCTACAACGCCTGAAATCTTGTGTCAGACTTGAGAAAGAAGGACTAAAGCACAGAACATCACCATCGTGGTCTTTGTCTTTCACTCCCAAATTTACAGATGAAAAACTGCTGACTGCATCCTCAAAGCCAAAAGTTGCCATCATTCGTGAAGAAGGGAGCAATGGTGATAGGGAGATGGCTGCTGCATTCTATGCTGCTGGATTTGAACCATGGGATATCACAATGTCAGACCTCTTAGCTGGGAAGTCTTCTCTAGAGGAGTACCGTGGGATTGCATTTGTTGGTGGTTTTAGCTATGCAGATGTTCTTGATTCAGCTAAAGGGTGGGCTGCATCAATCAGGTTTAATCAGCCCCTCATACAGCAGTTCCAGAATTTCTATAATAGGCCAGATACTTTCAGCCTTGGAGTGTGCAATGGTTGTCAGCTAATGGCTCTTCTTGGCTGGGTACCAGGATCAGATGTCGGAAGTTCTCTTGGTTCAGGTGGGGACATGTCCCAGCCAAGATTTATTCACAATGAATCTGGTCGTTTTGAGTGTCGGTTTACAAGTGTCTCTATAGGGACCTCTCCTGCTATCATGTTCAAAGGAATGGAAGGTTCTACACTGGGCATTTGGAGTGCTCATGGTGAGGGGAGAGCTTTCTTCCCAGATGAAAATGTTCTAGCTAGTGTTGTGAACTCTAACCTGGCTCCTGTGCGGTACTGTGACGATGCTAATAACATTACCGAAGTCTACCCGTTCAATCCCAATGGCTCTCCCCTTGGCATTGCAGCCCTTTGCTCCCCTGATGGAAGACATCTTGCTATGATGCCACACCCAGAGCGTTGCTTCATGATGTGGCAATATCCATGGTATCCCAAGGAATGGCAGCTTGAGAAGTGTGGTCCCAGTCCCTGGCTGCGCATGTTCCAGAATGCCAGAGAATGGTGTTCGTAG</cdnaseq>

Protein Sequence

<aaseq>MVSPGEMSVSNPLRFQGFPCNVGKRNVFIAARSSGLGRSRIAQQCFQQHHICYPGVRRASVPNVRMLPAPGALVSRGVDSSLVPKTGNASEAGVIQLYRIPYLQESETIELLRQVQAKVSSNIVGIKTEQCFNIQLDNALTPEKLATLQWLLAETYEPDKLQAQSFLEEEISRSPYSVIVEVGPRMTFSTAFSTNAVSICKSLSLMEVTRLERSRRYLLCLDPGNGPLDESQLNDFAALVHDRMTECVYPNKLTSFHSDVVPEPVRIVPVIERGREALEEINVKMGLAFDEQDIKYYTHLFRDDIKRNPTTVELFDIAQSNSEHSRHWFFNGKLVIDGETMPKTLFQLVKSPLKANPDNNSVIGFKDNSSAIKGYPANQLRPTIPGSTSPLSVMMRELDILFTAETHNFPCAVAPYPGAETGAGGRIRDTHATGKGSFVVASTAGYCVGNLRMEGSYAPWEDPSFSYPSNLASPLQILVDASDGASDYGNKFGEPLIQGFTRNFGMRLLNGERREWLKPIMFSGAIGQIDHAHISKGDPEIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMAQKLYRVVRACAEMGESNPIISIHDQGAGGNCNVVKEIIYPKGAEIDIRSIVVGDHTLSVLEIWGAEYQEQDALLVKPESRSLLESLCERERVSMAVIGTIDGCGKIVLIDSAAMEHAKINGLPPPTPVEDLELEKVLGDMPQKTFEFKRVSLVSEPLDIAPGVTIMDALKRVLSLPSICSKRFLTTKVDRCVTGLVAQQQTVGPLQLPLADVAVIAQTYTDLTGGACAIGEQPAKGLLNPKAMARLAVGEALTNLVWAKVSSLSDVKASGNWMYAAKLDGEGADMYDAAVALADCMIQLGIAIDGGKDSLSMAAQCDGEVVKAPGNLVISVYVTCPDITLTVTPDLKLGNAGVLLHIDLGKGKRRLGGSALAQAFDQIGNDCPDIDDVPYLKKAFEAVQELLSQRLISAGHDISDGGLIVSVLEMAFAGNCGVKLNIDSEDSGLLQALFAEELGLLLEVHLKDLSVVKQKLEAGGISANVIGQVTASPDIELVVDGRLHLKEKTSDLRDIWEETSFQLEGLQRLKSCVRLEKEGLKHRTSPSWSLSFTPKFTDEKLLTASSKPKVAIIREEGSNGDREMAAAFYAAGFEPWDITMSDLLAGKSSLEEYRGIAFVGGFSYADVLDSAKGWAASIRFNQPLIQQFQNFYNRPDTFSLGVCNGCQLMALLGWVPGSDVGSSLGSGGDMSQPRFIHNESGRFECRFTSVSIGTSPAIMFKGMEGSTLGIWSAHGEGRAFFPDENVLASVVNSNLAPVRYCDDANNITEVYPFNPNGSPLGIAALCSPDGRHLAMMPHPERCFMMWQYPWYPKEWQLEKCGPSPWLRMFQNAREWCS</aaseq>

Gene Sequence

<dnaseqindica>1..66#149..4342#ATGGTATCTCCGGGTGAAATGTCAGTAAGCAATCCATTACGCTTCCAAGGCTTTCCTTGTAATGTGGTAAGCGACCTTTGCACAACCGCGGATGGACTTTTTTCCCCCATAACATCATTGTGTTCTTGTGTGTCTACTCTCTACGTAGGGAAAAAGAAATGTTTTCATTGCTGCAAGGAGTTCTGGACTGGGAAGGTCGCGAATTGCTCAACAGTGCTTTCAGCAACATCATATTTGTTATCCAGGTGTTCGAAGAGCTTCAGTTCCTAATGTCCGAATGCTGCCAGCTCCTGGTGCTTTGGTTTCCAGGGGGGTTGACAGTTCATTGGTTCCCAAAACTGGTAATGCATCAGAAGCTGGAGTTATTCAGTTATATCGTATACCATATCTTCAAGAGAGTGAAACAATTGAGCTACTCAGGCAAGTGCAAGCAAAGGTTTCTTCTAATATTGTGGGTATAAAGACTGAACAATGCTTCAACATTCAATTGGACAATGCATTAACTCCAGAGAAGCTTGCAACACTTCAGTGGCTCTTAGCAGAAACCTATGAACCTGATAAGTTACAAGCACAAAGCTTTTTGGAGGAGGAAATCTCTAGGAGCCCTTATAGTGTCATTGTTGAGGTTGGTCCCCGGATGACTTTTTCAACAGCGTTCTCGACCAATGCTGTCTCAATATGTAAATCTCTCTCATTGATGGAAGTAACTCGCTTGGAGAGATCAAGGAGATACCTTTTGTGCCTGGATCCTGGCAATGGTCCACTTGATGAAAGCCAGCTTAATGACTTTGCTGCTTTGGTTCATGATAGAATGACAGAGTGTGTTTATCCTAACAAGCTCACATCATTTCATTCAGATGTAGTTCCTGAACCTGTCCGTATTGTTCCAGTCATTGAAAGGGGAAGGGAAGCTTTGGAAGAAATAAATGTGAAGATGGGACTTGCTTTTGATGAACAAGATATCAAGTACTATACCCACCTCTTCAGAGATGACATCAAAAGGAATCCAACCACTGTTGAACTTTTTGATATCGCACAATCCAATAGTGAACACAGCAGGCATTGGTTTTTCAATGGAAAGCTTGTGATAGATGGAGAAACCATGCCGAAAACCTTGTTTCAGTTAGTGAAGAGTCCCCTGAAGGCCAACCCCGATAATAACTCTGTCATCGGATTCAAGGACAACTCAAGTGCAATAAAGGGATACCCAGCAAATCAGCTGCGCCCAACAATTCCAGGCTCCACTTCACCATTATCTGTTATGATGCGTGAGCTTGATATTTTATTCACAGCAGAAACCCATAATTTTCCATGTGCTGTGGCACCTTACCCAGGAGCTGAGACAGGTGCAGGTGGTCGCATAAGAGACACACATGCCACCGGAAAGGGTTCTTTTGTTGTTGCTTCTACTGCTGGCTATTGTGTTGGTAATCTCCGAATGGAAGGTTCATATGCACCCTGGGAGGATCCATCCTTTTCATATCCGTCGAATTTGGCCTCCCCTTTGCAAATTCTGGTTGATGCTAGCGATGGTGCTTCTGACTATGGGAATAAGTTTGGTGAACCTCTAATTCAGGGCTTTACTAGAAATTTTGGGATGAGGCTGCTTAATGGGGAACGGCGTGAGTGGCTGAAGCCAATAATGTTTAGTGGGGCAATCGGGCAAATCGATCATGCACACATATCTAAGGGGGATCCAGAGATTGGGATGCTAGTTGTGAAGATTGGTGGCCCAGCATACAGAATTGGTATGGGTGGTGGTGCTGCCTCAAGCATGGTTAGTGGACAGAATGATGCAGAGCTCGATTTCAATGCAGTGCAGCGTGGAGATGCTGAAATGGCACAAAAACTATATCGTGTGGTCAGGGCATGTGCAGAAATGGGAGAGAGCAACCCCATTATCAGCATTCATGACCAGGGTGCTGGAGGAAATTGCAATGTAGTGAAGGAAATTATCTATCCTAAGGGTGCTGAAATTGATATACGATCAATTGTTGTTGGTGATCATACATTGTCTGTCTTGGAGATATGGGGTGCTGAGTACCAGGAACAAGATGCACTTCTGGTGAAGCCTGAGAGCAGAAGCCTGTTGGAGTCACTTTGTGAAAGGGAAAGGGTTTCAATGGCTGTCATTGGTACAATTGATGGATGTGGAAAGATTGTTTTGATTGACAGTGCTGCTATGGAGCATGCCAAGATAAATGGCCTTCCTCCTCCAACCCCTGTTGAGGATCTTGAACTTGAAAAGGTTCTAGGAGATATGCCCCAAAAGACCTTTGAATTCAAGCGAGTGTCTCTAGTCAGCGAGCCCTTAGACATTGCCCCTGGAGTAACAATCATGGATGCTCTGAAGCGAGTATTGAGTCTTCCGTCCATATGTTCTAAGCGTTTCTTAACCACAAAAGTTGACAGGTGTGTGACAGGTCTTGTTGCACAACAGCAGACAGTTGGACCTCTCCAACTTCCTCTCGCAGATGTGGCTGTGATTGCACAGACATATACTGACTTGACAGGTGGTGCCTGTGCCATTGGAGAACAACCAGCAAAAGGTTTACTTAATCCCAAGGCCATGGCAAGACTTGCTGTTGGGGAGGCCTTGACTAATCTGGTCTGGGCTAAAGTTTCATCACTTTCTGATGTCAAAGCAAGTGGTAACTGGATGTATGCTGCAAAGCTTGATGGAGAAGGTGCAGATATGTATGATGCTGCTGTTGCATTGGCTGACTGCATGATTCAACTTGGTATTGCAATCGATGGGGGAAAGGACAGTCTTTCCATGGCAGCTCAATGTGATGGTGAGGTTGTCAAGGCTCCTGGAAATCTGGTCATCAGTGTTTATGTGACATGTCCTGATATAACATTGACAGTAACTCCTGATTTGAAGCTTGGCAATGCTGGAGTTTTGCTGCACATTGACCTGGGCAAAGGAAAGCGCAGGCTTGGTGGTTCTGCTCTTGCACAGGCTTTTGATCAAATTGGAAATGACTGCCCAGACATTGATGATGTTCCCTACTTAAAGAAAGCTTTTGAGGCCGTTCAGGAATTGCTTAGTCAGCGCCTTATCTCAGCTGGCCATGACATTAGTGATGGGGGTCTTATTGTGAGTGTTCTTGAGATGGCATTTGCTGGTAATTGCGGTGTTAAGCTGAACATTGACTCAGAAGATTCGGGCCTTCTTCAAGCACTCTTTGCCGAGGAGCTTGGCCTTCTTCTTGAAGTGCACTTGAAAGATCTCAGTGTTGTGAAGCAAAAGCTTGAAGCAGGAGGCATTTCCGCTAATGTAATTGGACAAGTTACAGCATCACCAGATATTGAGCTAGTTGTTGATGGCAGGCTGCATCTCAAGGAAAAAACTTCAGATCTCAGGGATATCTGGGAGGAAACAAGCTTCCAGCTTGAGGGGCTACAACGCCTGAAATCTTGTGTCAGACTTGAGAAAGAAGGACTAAAGCACAGAACATCACCATCGTGGTCTTTGTCTTTCACTCCCAAATTTACAGATGAAAAACTGCTGACTGCATCCTCAAAGCCAAAAGTTGCCATCATTCGTGAAGAAGGGAGCAATGGTGATAGGGAGATGGCTGCTGCATTCTATGCTGCTGGATTTGAACCATGGGATATCACAATGTCAGACCTCTTAGCTGGGAAGTCTTCTCTAGAGGAGTACCGTGGGATTGCATTTGTTGGTGGTTTTAGCTATGCAGATGTTCTTGATTCAGCTAAAGGGTGGGCTGCATCAATCAGGTTTAATCAGCCCCTCATACAGCAGTTCCAGAATTTCTATAATAGGCCAGATACTTTCAGCCTTGGAGTGTGCAATGGTTGTCAGCTAATGGCTCTTCTTGGCTGGGTACCAGGATCAGATGTCGGAAGTTCTCTTGGTTCAGGTGGGGACATGTCCCAGCCAAGATTTATTCACAATGAATCTGGTCGTTTTGAGTGTCGGTTTACAAGTGTCTCTATAGGGACCTCTCCTGCTATCATGTTCAAAGGAATGGAAGGTTCTACACTGGGCATTTGGAGTGCTCATGGTGAGGGGAGAGCTTTCTTCCCAGATGAAAATGTTCTAGCTAGTGTTGTGAACTCTAACCTGGCTCCTGTGCGGTACTGTGACGATGCTAATAACATTACCGAAGTCTACCCGTTCAATCCCAATGGCTCTCCCCTTGGCATTGCAGCCCTTTGCTCCCCTGATGGAAGACATCTTGCTATGATGCCACACCCAGAGCGTTGCTTCATGATGTGGCAATATCCATGGTATCCCAAGGAATGGCAGCTTGAGAAGTGTGGTCCCAGTCCCTGGCTGCGCATGTTCCAGAATGCCAGAGAATGGTGTTCGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA000359