Os08g0496900

From RiceWiki
Revision as of 13:06, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0496900| Description = Nonaspanin (TM9SF) family protein| Version = NM_001068673.1 GI:115477083 GeneID:4345930| Length = 4484 bp| Definiti...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0496900

Description

Nonaspanin (TM9SF) family protein

Version

NM_001068673.1 GI:115477083 GeneID:4345930

Length

4484 bp

Definition

Oryza sativa Japonica Group Os08g0496900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:24625691..24630174

Sequence Coding Region

24626168..24628153

Expression

GEO Profiles:Os08g0496900

Genome Context

<gbrowseImage1> name=NC_008401:24625691..24630174 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:24625691..24630174 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctggggctctgcatatttcttgttctccggctccattattgtgggctcttctgttgctgactgtgtcaccaggcaatgcattctacttgcctggcagctacatgcacacatactcccaaggtgaggaaatatgggccaaggtgaactcccttacgtccatcgagacagagatgccattcagctactacagcctgccatactgccggccccaaggcggcattaagaagagcgctgagaacctcggtgaacttctcatgggtgatcagatagacaattcaccctacaggttccgtgtgaatgttaacgagtccctctacctctgcaccacaaaagggcttaatgagaatgatgcaaagctcctcaagcagcgcacacgtgacctctaccaggttaacatgatgctggataatttgcctgtcatgcgttttactgagcagaatggtatcactgtacagtggactggctttcctgttggttacactccagctggaatctcggaagattacatcattaaccatttaaagtttaaggtgttggtccatgagtacgagggcaggaatgtggagatcattggcactggggaagaaggatctggtgtcatctcggaatttgacaagaaggggatgtctgggtatcagattgttggttttgaggttgtgccttgcagtgtgaagcgtgatgccgaggctttctccaagagtaacatgtatgacagcattgaacctgtgagctgcccaatggagcttcagaagtctcaggtgatcaggcaacaggagaggatcactttcacttatgacgttgaatttgtgaagagtgacatcaagtggccatctaggtgggatgcttatctgaagatggaggcaggtgctaaagtccactggttctccattatgaactccctaatggtgatcctgttcttggctggtattgtctttgttatattcttgagaactgtcaggagggacttgacgaggtatgaagaactcgacaaggaggcgcaggcacagatgaatgaggagctatctgggtggaagcttgttgtgggagatgtattcagagagccaacttgccctaagctgctgtgtgtcatgattggtgatggtgttcagattttgggcatggcaatagtaacaattattttctccacacttgggttcatgtctccagcatcaagaggaatgcttctcactgggatgatcattctctatcttttccttggtattgcagctggatatgtcagtgtgcggctgtggaagactattaagggcacatctgaagggtggagatcagtgtcctggttaactgcctgcttcttccctggtgtcttgttcatggtccttactgtcttaaacttcgtcttatggggaagcaagagcactggagctttacctatctcactatttttcgcccttttagctatgtggttctgcatatctgtgccgttaactcttgttggtggctttgttggtacaagatcagcgcagatagagtttcctgtccgtaccaaccagatcccgagagagatccctgcacggaaatacccatcatggcttcttgtccttggtgcaggaacactgccattcggaaccctgttcattgagctcttctttattctgtcaagcatttggcttggaaggttctactatgtgtttggctttctgctaattgtccttgtgctgcttgtcattgtctgcgctgaggtctctgttgttctgacatacatgaacctctgcgtggaggactggaggtggtggtggaaagctttctttgcctcaggatctgttgcaatctatgtgttcctctactccatcaactacttggtatttgacctcagaagcctgagcgggcctgtctctgccatgctttaccttggttactcattcctcatggcatttgcaatcatgctggccactggaaccattggatttttgacatcattctccttcgtgcactatctgttctcatccgtgaagatcgattga</cdnaseq>

Protein Sequence

<aaseq>MAGALHISCSPAPLLWALLLLTVSPGNAFYLPGSYMHTYSQGEE IWAKVNSLTSIETEMPFSYYSLPYCRPQGGIKKSAENLGELLMGDQIDNSPYRFRVNV NESLYLCTTKGLNENDAKLLKQRTRDLYQVNMMLDNLPVMRFTEQNGITVQWTGFPVG YTPAGISEDYIINHLKFKVLVHEYEGRNVEIIGTGEEGSGVISEFDKKGMSGYQIVGF EVVPCSVKRDAEAFSKSNMYDSIEPVSCPMELQKSQVIRQQERITFTYDVEFVKSDIK WPSRWDAYLKMEAGAKVHWFSIMNSLMVILFLAGIVFVIFLRTVRRDLTRYEELDKEA QAQMNEELSGWKLVVGDVFREPTCPKLLCVMIGDGVQILGMAIVTIIFSTLGFMSPAS RGMLLTGMIILYLFLGIAAGYVSVRLWKTIKGTSEGWRSVSWLTACFFPGVLFMVLTV LNFVLWGSKSTGALPISLFFALLAMWFCISVPLTLVGGFVGTRSAQIEFPVRTNQIPR EIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLVLLVIVC AEVSVVLTYMNLCVEDWRWWWKAFFASGSVAIYVFLYSINYLVFDLRSLSGPVSAMLY LGYSFLMAFAIMLATGTIGFLTSFSFVHYLFSSVKID</aaseq>

Gene Sequence

<dnaseqindica>2022..4007#acacactctctctctcgccgtgcatctctttcccctaccatcccacgcctccctctcccccgatccatccaccggcaagcggccgcttccgccaccgcgtcaccaaggtgcggcgccttcttccgctctcgctccccccgcttctggaaccttccagaagttccgatctgtttctgttgctttaattagcgcagggtcgcagacctaaccgtttgaatttgtttccccctgtgttagcttgctctagatctccgagttgtttggctgctaaccccgtagatccacgagttcccttgttctaggctgcgcttgcttggttgttgtgcgtgaagagtggagtgtctgattgtgtggaacgcttccagttctaggtgtttataagaggtttgtgcaggaagtgttcagatgtattatggtacaaggttgctgtaggaattgtttgaaaacgtatagagtcaacgcgataacttagattgatcacggacacgagtacatatagggatggtacatccttatctctatacccgacttatagaaacagaatcgggataggattgagggaaaccgaaccggatacaaatacaatatctctaacacccccccgcagtttgaacgtgggcgcgctctgcccaaactgaagcggaactcacaaaacaccgagcttggcagacccttggtgaagatgtcggcgtactgtgatgaagtaggtacatgcagcacgcggactgtagcaagggcaaccttgtcacgaacaaagtggagatcaatctcgatgtgcttggttcgctgatgttgtatgggattggtggagaggtacaccgcactaatattgtcacaataaaccaaggtggcccgtgtcggaggagtgtgtaactcgtggaggagctgtcgcaaccttgcgggatggtgtcgtgctgcggctggaggccggcggaggtggtgtggagcccggcggaggaggccgcagccgatgcggaggagatggtggctgctgcagtggagttgaccggagcgccggctgacggagtgtccggctgcgaggatgtggacgccgagagcttctcgatgaaggaaatcaacgctttccgtgcggctgtggaggagattgcagccgccgattcggcgacattggcagcagtggtggggtcaatgccatgtcgagcgtcgggttggaaggccgcacggacggcggcagatgcggcgtcgacggcggtcacaggagtgatggacggtggtggtggttcgtcggccatcgtgaggcggcgcggcgaggagggagaagacggcgcggcggcgtggggtgcgcggcggcgcgcaggagaggagatgcgccgcggcgtgggagacgcggcggcgcgggagcagaagcggcgcggcggcggcgcaggcgggacgcggagggcgcgtcggtgcgaagaagagtcgcgacgcgtgtcgagagagagagagagagagaggcggaagcgaatttggagattaatctgataccatgcaaacgtatagagtcaacgcgataacttagattgatcacggacacgagtacatatagggacggtacatccttatctctatacccgacttatagaaacagaatcgggataggattgagggaaaccgaaccggatacaaatacaatatctcttaacattgttgtaatgtttttctcccgataatacgcttttggttattggagaatttttttttggctttcttgtgcttaggaatcgctgaattgctgtgcctggtggaactgtagcagtatgtttgtgcagccagtatgcctttttggtggagaattgatgtctgctgctaacttagaaatatagatgttatatattattgtagaacggaaatttcgcaaaagatttactaggaaattactataggtttctacattttgtcataattgtgatgatatcttggtgattccggatgaattatgaagttgtttgattgaaataatggcttggttgcaggttagctcacacatgttctaggctattggaggatctttgcttcagatggctggggctctgcatatttcttgttctccggctccattattgtgggctcttctgttgctgactgtgtcaccaggcaatgcattctacttgcctggcagctacatgcacacatactcccaaggtgaggaaatatgggccaaggtgaactcccttacgtccatcgagacagagatgccattcagctactacagcctgccatactgccggccccaaggcggcattaagaagagcgctgagaacctcggtgaacttctcatgggtgatcagatagacaattcaccctacaggttccgtgtgaatgttaacgagtccctctacctctgcaccacaaaagggcttaatgagaatgatgcaaagctcctcaagcagcgcacacgtgacctctaccaggttaacatgatgctggataatttgcctgtcatgcgttttactgagcagaatggtatcactgtacagtggactggctttcctgttggttacactccagctggaatctcggaagattacatcattaaccatttaaagtttaaggtgttggtccatgagtacgagggcaggaatgtggagatcattggcactggggaagaaggatctggtgtcatctcggaatttgacaagaaggggatgtctgggtatcagattgttggttttgaggttgtgccttgcagtgtgaagcgtgatgccgaggctttctccaagagtaacatgtatgacagcattgaacctgtgagctgcccaatggagcttcagaagtctcaggtgatcaggcaacaggagaggatcactttcacttatgacgttgaatttgtgaagagtgacatcaagtggccatctaggtgggatgcttatctgaagatggaggcaggtgctaaagtccactggttctccattatgaactccctaatggtgatcctgttcttggctggtattgtctttgttatattcttgagaactgtcaggagggacttgacgaggtatgaagaactcgacaaggaggcgcaggcacagatgaatgaggagctatctgggtggaagcttgttgtgggagatgtattcagagagccaacttgccctaagctgctgtgtgtcatgattggtgatggtgttcagattttgggcatggcaatagtaacaattattttctccacacttgggttcatgtctccagcatcaagaggaatgcttctcactgggatgatcattctctatcttttccttggtattgcagctggatatgtcagtgtgcggctgtggaagactattaagggcacatctgaagggtggagatcagtgtcctggttaactgcctgcttcttccctggtgtcttgttcatggtccttactgtcttaaacttcgtcttatggggaagcaagagcactggagctttacctatctcactatttttcgcccttttagctatgtggttctgcatatctgtgccgttaactcttgttggtggctttgttggtacaagatcagcgcagatagagtttcctgtccgtaccaaccagatcccgagagagatccctgcacggaaatacccatcatggcttcttgtccttggtgcaggaacactgccattcggaaccctgttcattgagctcttctttattctgtcaagcatttggcttggaaggttctactatgtgtttggctttctgctaattgtccttgtgctgcttgtcattgtctgcgctgaggtctctgttgttctgacatacatgaacctctgcgtggaggactggaggtggtggtggaaagctttctttgcctcaggatctgttgcaatctatgtgttcctctactccatcaactacttggtatttgacctcagaagcctgagcgggcctgtctctgccatgctttaccttggttactcattcctcatggcatttgcaatcatgctggccactggaaccattggatttttgacatcattctccttcgtgcactatctgttctcatccgtgaagatcgattgatgaatgaagattacgatactctctggccctccggattcgtgttccctgtgtgtgggtgtgaactttcaccatgagatgcactgtttattgtttgaggagattttgatcaactgaagatgtttttaagatgaaaggtattctccacctagcggacgtagtcattttttcctctattccaaccgttgttgtgagttgtaactgctagagttaattaatctagatacatgcaacccggctttgcaagggtttaagagcaacgctatgttgattatcgtgattggcagatagaattctgtcatattcaagtgaaaatgtagccacctgccgttcaaaattctgatgtgtgacctgaagattagctgtgtcagctcttgacaaaactgtaatacgattgcaagtacctgtttccttggcatttttttatcatgtccagtacaaatttatatttccttatctgtagtgggatagtttctcgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0496900, RefSeq:Os08g0496900