Os09g0438400

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Revision as of 07:26, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0438400| Description = Similar to Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha). Splice isoform 3| Version = NM_001069804.1 GI:11547...")
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Gene Name

Os09g0438400

Description

Similar to Choline kinase alpha (EC 2.7.1.32) (CK) (CHETK-alpha). Splice isoform 3

Version

NM_001069804.1 GI:115479350 GeneID:4347160

Length

3858 bp

Definition

Oryza sativa Japonica Group Os09g0438400, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:16878880..16882737

Sequence Coding Region

16878880..16879050,16879296..16879387,16879724..16879916,16880291..16880396,16880655..16880777
,16881101..16881192,16881633..16881738,16881820..16881881,16882378..16882470
,16882609..16882737

Expression

GEO Profiles:Os09g0438400

Genome Context

<gbrowseImage1> name=NC_008402:16878880..16882737 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:16878880..16882737 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggatcggaggggcggagctggagcggggcggcggcggtggggggcggcgtggaaggggaggcggcgatcgcggcggtggtggcgcctgcgccgggggacgtgccggcgtcgggcgcgtccgtggacatagcgctgccgctcccggagatgacgccccgcatcatgcgaaggtatctgcaaggaattggtgagggggtggtcatcgctggacagctcgcgcttctcgatcgagacggtgtctggcggcatcacgaatatgtaaaattatataaccttctgtcactgaaaatactaccaatttaccaaaaacttagtggaaaccacaactgtaatttactgcttgcagtgctgaaggtgtccgcagaagatggcaagggtaacaagtcttctgtgacagttcgtttgtatggcccaaatacagacttggtgattgatcggaagagggaattgcaggctataccacatctctcagctgcagggtttggggctcagctacttggaacatttgaaaatggaatggtccagtcattcatctatgcacgaacattaactccttcagacatgaaggaacctagaatagcagctgagattgccaaagagattcgcagattccatcaagttgatataccaggatcaaaagaaccacagctatgggatgatatattcaagttcatgaaaaaagcttcgatattggagtttgaggataaggagaagcagaagagatatgaaacaatctcttttagaaaaatacaagatgaagttaaagaacttaagaaaagctctacttcattgatttcgagtatgggtcgtacagctaccgtggttatgatattgcaaaccatttcaatgaatatgcaggctatgattgcgactatagcttgtatccagataaaaattctcaataccacttcttcaggaactatcttcaacctgataggccaagtccaactgcaagatctggatgccctttatgtggaaacaaacacctatagattagcatcacacatttactgggcgttgtgggctcttattcaggcaaaggtatcccccattgatttcgactatcttggatacttttttctacggtacgacgaatacaagaaacagagggagtcatgcctctccttggcagaaagctccctctccgcattgaaaaatggctag</cdnaseq>

Protein Sequence

<aaseq>MGSEGRSWSGAAAVGGGVEGEAAIAAVVAPAPGDVPASGASVDI ALPLPEMTPRIMRRYLQGIGEGVVIAGQLALLDRDGVWRHHEYVKLYNLLSLKILPIY QKLSGNHNCNLLLAVLKVSAEDGKGNKSSVTVRLYGPNTDLVIDRKRELQAIPHLSAA GFGAQLLGTFENGMVQSFIYARTLTPSDMKEPRIAAEIAKEIRRFHQVDIPGSKEPQL WDDIFKFMKKASILEFEDKEKQKRYETISFRKIQDEVKELKKSSTSLISSMGRTATVV MILQTISMNMQAMIATIACIQIKILNTTSSGTIFNLIGQVQLQDLDALYVETNTYRLA SHIYWALWALIQAKVSPIDFDYLGYFFLRYDEYKKQRESCLSLAESSLSALKNG</aaseq>

Gene Sequence

<dnaseqindica>1..171#417..508#845..1037#1412..1517#1776..1898#2222..2313#2754..2859#2941..3002#3499..3591#3730..3858#atgggatcggaggggcggagctggagcggggcggcggcggtggggggcggcgtggaaggggaggcggcgatcgcggcggtggtggcgcctgcgccgggggacgtgccggcgtcgggcgcgtccgtggacatagcgctgccgctcccggagatgacgccccgcatcatgcgagtacccctgatccccccctctcttcgaatttgcttctgggattttgtttcgtttcgttctgattgatgcgttcgtgagtgagtgggtgcggtgcggtgcgggcgctgagttggaggaatcgcgggtgtttttattttattttatttttttttagagaaaaggctcaagggaatcgcgggagttcgttgtctgtcttcaatttggtttttgtttctcacgcgaggaatgttcgcgcgattgtgcagaggtatctgcaaggaattggtgagggggtggtcatcgctggacagctcgcgcttctcgatcgagacggtgtctggcggcatcacgaatatgtgtgagtccctgctccttggcagtttcatggcttgtcgcgttgtcctgaatttttttttcttcttcctgtttcacctgagcaactcgttgtaagtagaggaaaacataggccagggctgctgcacaaacaagggaaatttggtgttaggcacattttaaagtaatttggatagcggcagacataacattatggccatcaacagaacttgattgcatttctgaattctgaaaacttaattgcatttctgaacttttgtgggatcaagaaactcttttaccattacttgcattttttttctaatgcctaaatcatcttatcttatgttgtttgctatagaaaattatataaccttctgtcactgaaaatactaccaatttaccaaaaacttagtggaaaccacaactgtaatttactgcttgcagtgctgaaggtgtccgcagaagatggcaagggtaacaagtcttctgtgacagttcgtttgtatggcccaaatacagacttggtgattgatcggaagagggaattgcaggtgagcatttgaatagtgtgattattgatgatgcgtgcatatcatgtcctataatgttccttcatggctgtgcaattggttcatctgttagtcctgctttattttatttggtgcatttttttacagcaagctcaaagcacctcattgttttttcaaatattcaagggggcttgtaagggtttttaatgtattattaaactttgtattttccacagcgtcttctacagtgatttgatatagaaaagcaacatcaattataaacaaatgttatcttatactgcgaccagcacaacatccattatgtcaaagaaatacccactattttctggtgtaaattgttccctaatgcatacatctattaccgtcatgtttaggctataccacatctctcagctgcagggtttggggctcagctacttggaacatttgaaaatggaatggtccagtcattcatctatgcacgaacattaactccttcaggtaagcatattattgttattcgtggatggggtgggctctttctcactgttatattgtctaatatcatctttctcttttttcatttattacctagaatattgtaaactagtgatctgaaatgctagttcaaaaggttttgtgggtttttagttggaattatacatagtttgctaagttattttacactttagatttgcaaaagtcttgaaaaatgcttcttgcaatttgcttgtaaatattcattactttgttttctagacatgaaggaacctagaatagcagctgagattgccaaagagattcgcagattccatcaagttgatataccaggatcaaaagaaccacagctatgggatgatatattcaagttcatgaaaaaaggtacccttccaatgatatatcatacattcaagtttgttacttagttagctttttttttttgataaaggagatactccttgcttctgttgaaagtgtataatgttcagagcgaagtaaaaataaacaaagaaagaaataagggtataattttcagagcaaagtaaaaataaacagagaaacaaaagaaaatctgggtttaccaatttgaaacatcacgtgacaaatggatcagacaaaatccaaactaggtgctaacataatgctaccatctagctgcttctatggcatctatgttcttacgttctgtcaaatacttctcacagcttcgatattggagtttgaggataaggagaagcagaagagatatgaaacaatctcttttagaaaaatacaagatgaagttaaagaacttaaggtaccttgcaaatgaatctagattttgtgttgtttttattttatttttactgttaggtactatggatgcttggagcaatcagtttcatcttattcaaagagccacttttgttcatatttttccttcaccatagaagggctcatattcataaggcaatactttataatacgatacatgtgtatatcaaattttatggctttgttgtccatgtataaaatacgtctttcttttcttataggatctgtcagaccttctgcatgctcctgtagttttttcacacaatgacttgctttcaggcaatttgatgttgaatgatttggaaggcaagcaccgagttcacttgcattgtttatatttcgatatttaatatatttttttcattttatattctatacttgcaaaactgaataggtggctatatgtgtttgtctttttgccagaaaagctctacttcattgatttcgagtatgggtcgtacagctaccgtggttatgatattgcaaaccatttcaatgaatatgcaggctatgattgcgactatagcttgtaagttatcttcttactggttgaattctccaataaaacttattgtcatcatgttgctcagtattttgttgcctgttctaggtatccagataaaaattctcaataccacttcttcaggaactatcttcaacctgataggccaagtgaggtatgttaatatgataggttgtcctcttgtgaagcaaaacaaacggaattaatacatggtgttgctagcttttcttacaaggtcgagtcatatggtgaacccattgtaaatttggtgttagtcataagtagtgtcgagtcatatggtgaacccattgtaaatttggtgttagtcataagtagtgtcgagccatgctataagtagtgtcattgcttgtttaaattaaaatcagtaacacatgcttacgtgctacatgtaattgccatttatacttgtctaattaacgtgaactgctcatattacttttctgaaaggattgtatgatgcttagcgttaaaggtggttggaaaacatttgaagtattgctttaagaaaatatgtgtattcttttgaatgtagaagaacatcgtgcaattttttatctgatgttatctcaccacaatgcacttgttgtatttaaaattcttatttggtttatttctaactggaaggtccaactgcaagatctggatgccctttatgtggaaacaaacacctatagattagcatcacacatttactgggcgttgtgggctcttattcaggtgagcactaccctccttttgctacagacacaacattcagtttcaagtcttttcaagttgttcttgtagcaattgactttactgccatgcaccccattataatggaacttggaacatataattgccatttggatgcaggcaaaggtatcccccattgatttcgactatcttggatacttttttctacggtacgacgaatacaagaaacagagggagtcatgcctctccttggcagaaagctccctctccgcattgaaaaatggctag</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0438400, RefSeq:Os09g0438400

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os09g0438400&oldid=798"