Os08g0502000

From RiceWiki
Revision as of 13:06, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os08g0502000| Description = Conserved hypothetical protein| Version = NM_001068702.1 GI:115477141 GeneID:4345959| Length = 6462 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os08g0502000

Description

Conserved hypothetical protein

Version

NM_001068702.1 GI:115477141 GeneID:4345959

Length

6462 bp

Definition

Oryza sativa Japonica Group Os08g0502000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 8

Location

Chromosome 8:24888582..24895043

Sequence Coding Region

24888955..24890043,24890135..24890198,24890275..24890393,24890479..24890550,24890749..24890859
,24891612..24891653,24893053..24893145,24893437..24893538,24893607..24893748
,24894548..24894798

Expression

GEO Profiles:Os08g0502000

Genome Context

<gbrowseImage1> name=NC_008401:24888582..24895043 source=RiceChromosome08 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008401:24888582..24895043 source=RiceChromosome08 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaacaagaaggtggttaagatacggcttcttgaggattgtccacctgccccattgtccagtgacaaaaaatcatttggtacagtgaaccgtttttcctcaagtgatgtgataaccaaaaagaggaaagtgcttgtgtctggaggtacaaaacattgtgctcttagtgctgtggctagggaaaaaacatcagttccgtcatttatccccttgagctcattccctgttattgataaaagcactgagaggaggattcatgagttcgcacagaaagtgtcatctgatataaccattgaggatatacaaaaaaagctagtggttccatctacacacacaccggtttcgaagaatactgataagattacattgggaatggtgcaaagatctgttgaggctataaatgctgctctgcatatgttagaaaatggtgcatccatagaagatgtcaaatctgtatgtgcacctagtgatcttttccaacttgcaaggtggaagaataaactgaatatatatcttgcaccatttcttcatggcatgcgctacacatcttatgggcgccacttcaccaaactggacaaactcgagcagattgtagataggctacaatggtatattgaaagtggtgatacggttgttgacttttgctgtggctcaaatgattttagcttattattgaaggaaaagcttgaagcttctgaaaaaagttgcttctataaaaattttgatcttattcaaccaaagaatgacttcaattttgagagacgagactggatgaccgttcaaccagatgaattgcccacaggatgtcgattgatcatgggattgaatcctccgtttgggtttaaagcttctcttgctaatcaattcattaataaagccctcactttcaagcccaagctgatcatactcattgttcctaaggaaactgaaaggctggacaggaaatacccaccatatgagctaatatgggaggattctcatcagcttgcaggaaagtcgttctatttgcctgggtcgcttgatgctgataacaagattatggaacaatggaatatgtcaccacctcctctttctctatggagccgtagtgattgggctcggaaacacaaggaaatagctaaaacaatggggcacatcagtaaaaatgtgtggtgcttagatgatactcaaaggtctgttgtaaacacagggcatgcacaaatggctaatgagggggatgatgaccttgacaacaaagaaagacaagaagaggcaccactaaatgcctctgttatagatcagttgttgtctgacacataccatgatcctactagctcgccaggggactactggacagataccaatggaagatcacggcagccttgcaactacgagggaagaaatgatccaacccatgaatatcatgcaggcatgggttgtggatctgacatgagcatttcatcatctgacaagagcgattgtgaaaaacaaaccgaaactatgtcaaactcagagcatgggcatactggttcagaagcccacgatcatgttggaagtgcacctgtggaacaaccaactggttttgcggattgtgatgaggtgacatcagctggcattgagtaccatagcctggaaaattcaccactcacagagagacctgcagatgcagctggagttcaatacaagatgctggaagacacaccacctcctctggatgaactcgtacctggcttttctgggcagccgatcgtttcacttcctggaggaggcaggctttcagctgggttgcaatatcaaaggctggaagacacactgtccagagggacacctgaagctggtgctggttgcagacagctggaagattcactacctgcaccccctgctgcttctgaggtcgatgcagtggttgcaaaatatctgccacagacaacgagtgatctccctgcattaccgttcgttcctgctccaagaattcccttccctggactccagttcgccccaagaaatgacttgtggcaaggatggtacccacctccagaatttctgtccagaggcatggaccatccgcctttcatgcacggctcctctggttggctcgacgactag</cdnaseq>

Protein Sequence

<aaseq>MNKKVVKIRLLEDCPPAPLSSDKKSFGTVNRFSSSDVITKKRKV LVSGGTKHCALSAVAREKTSVPSFIPLSSFPVIDKSTERRIHEFAQKVSSDITIEDIQ KKLVVPSTHTPVSKNTDKITLGMVQRSVEAINAALHMLENGASIEDVKSVCAPSDLFQ LARWKNKLNIYLAPFLHGMRYTSYGRHFTKLDKLEQIVDRLQWYIESGDTVVDFCCGS NDFSLLLKEKLEASEKSCFYKNFDLIQPKNDFNFERRDWMTVQPDELPTGCRLIMGLN PPFGFKASLANQFINKALTFKPKLIILIVPKETERLDRKYPPYELIWEDSHQLAGKSF YLPGSLDADNKIMEQWNMSPPPLSLWSRSDWARKHKEIAKTMGHISKNVWCLDDTQRS VVNTGHAQMANEGDDDLDNKERQEEAPLNASVIDQLLSDTYHDPTSSPGDYWTDTNGR SRQPCNYEGRNDPTHEYHAGMGCGSDMSISSSDKSDCEKQTETMSNSEHGHTGSEAHD HVGSAPVEQPTGFADCDEVTSAGIEYHSLENSPLTERPADAAGVQYKMLEDTPPPLDE LVPGFSGQPIVSLPGGGRLSAGLQYQRLEDTLSRGTPEAGAGCRQLEDSLPAPPAASE VDAVVAKYLPQTTSDLPALPFVPAPRIPFPGLQFAPRNDLWQGWYPPPEFLSRGMDHP PFMHGSSGWLDD</aaseq>

Gene Sequence

<dnaseqindica>5001..6089#4846..4909#4651..4769#4494..4565#4185..4295#3391..3432#1899..1991#1506..1607#1296..1437#246..496#ttccaaagggcgtgggagggccttcttcccaataaccgaatattaatattttgcctgtatgatttctcagtttttttttataaaattgttgcgtttgttattcaagtacacaaatttctgactaaatcttgtaatttttgcataggaaacatgatattgatcctaaacttagaaccccgacaagagatcatattaaatttcctgataatcctgctgtcacgagaaagcccttcgatgtaaatggaatgaacaagaaggtggttaagatacggcttcttgaggattgtccacctgccccattgtccagtgacaaaaaatcatttggtacagtgaaccgtttttcctcaagtgatgtgataaccaaaaagaggaaagtgcttgtgtctggaggtacaaaacattgtgctcttagtgctgtggctagggaaaaaacatcagttccgtcatttatccccttgagctcattccctgttattgataaaagcactgagaggaggtaaatcttgcgcacttctactgttaattgttttcctctttcattcagttctcattgtttccttttgttatgcaatcaactttgactgcaaaagtgaaaaccaaatgtttgttccgcataaaaacaactctagtaaagctgttgaaactaaaaattatacagttataatttgggagtggctatggtacatgtgtagttagttttatgcaatcttgtaaacttatcacataatccactgatcatcctacgagtgggaatggtaggaagcagaagcaatatttaaggagggaaaactaatctttggtggaaaattttaccatgtaccatagctactccttttatgttttactgttcaactatgtttgaaaaaaaaataaactgcaattttttggattggtgtaccagcagtgagtgagtgccaagtttattttgcttaactgctttggggtttatttacactctgttgtaaaggtactgactactgaatcacattgagaaaagttgaagaggtaaacagaatacagaaatttattacaaatcatatggggacacctggaatttctgacaagattagcatccattgtggatgattaaatggttgtattcaaatttgttggatttctggctgctaacaaagaattcagaaatgatttgttccatggtttattcaacagacaaaatttcattgtacatgcagtttgcatgataccctttaaaatgtctgttgaagctgaacttaggtgatgttgtgtttttatttactgcaatccgcaagagctgagattatcctttaattcaggattcatgagttcgcacagaaagtgtcatctgatataaccattgaggatatacaaaaaaagctagtggttccatctacacacacaccggtttcgaagaatactgataagattacattgggaatggtgcaaagatctgttgaggtactcttctgcgcttccttaaaagaaatgccatgaatttggtcgattcttacatattgtccttgcaggctataaatgctgctctgcatatgttagaaaatggtgcatccatagaagatgtcaaatctgtatgtgcacctagtgatcttttccaacttgcaaggtggaaggtacatgaatatattgaaaacacacttccttgctgtaacaatggtttactgctgaatattatgaactcctgtgtctcattcttatatgtaataggccttatagtttgtttctctttatgcacaatgagaatggtcaacatcacaccagataatagaaaaattcctatgattctaacatgcttgtaattgcttatgattgtgtggagtgatatatgctaaaagcaagtttgtagtctgtatagaaataacaaaacctcttctatccatgatatcatgaactattgtctgcagaataaactgaatatatatcttgcaccatttcttcatggcatgcgctacacatcttatgggcgccacttcaccaaactggacaaactcgagcaggttggtatgcagatcagtaatactgtgggttggttattttgctgtactgatctatcatccttttaattttcctttggaagataacattttgatttcggaagttataaatattatttttaaatgttaacccaaaacagtcttgtcatgaaataaatattcttgcgaacgggtctgtagccagtggccacaacactctagtagcacctaccagcgtctagttcaactccccttgggagcaagttttcagggttggttttaaaaaggacactcgctggcccctcggttaaaacacgtgttagaaaacaacctgtgggcaagccctcgtgtacgggacaggggcctcaaagcacagattaaggcccgaaccatggggggcaggtcctcgtgtcaagggaccagggttcatggactttcttggctggctttggctgctgaggcttcttcgtgaaaaagccgtgggggtggtctttcccccaccgatcaagtttcttttaaatggatattcttgccaattctttgctcattatcgtcagttttaacaaagttgtacttgattttgtaattggaaaaagaaatctatatctcgtccttcaactcttgttcagtttactcttcattactcaactataaattgtttggttctgcatgaattaaattgtttcgtgatgaatacttggaaaaacaatgttccaattatcaaatagccctgcaaatattacttgtgaatccaaagttccagacaattactgtgtcaatgaggtttatgtttggacctctgcacattcatatgcagtggtacacatcacttgtcaaatattttaattaccactccctttgtctcaagatggagagatgatcatcatttcatagaaggaactgtttggcctccctctgtttagagaagaagttgccatgattaaaattaagcaagaacaaattatgctacccctctaccattccttggcatgtaccattttgctgtatttttatgtgctgagagttaaacgtggacaaaggaatcaaacacattttttttaaaatcttattcaagtgtcaatcttgtcttgtgatttgcttgcataaatatgtccactgcaccaataaacaaaagtaggaatttgtttcatttggtattaccaatggaaatttctagagatctatatccttttgctactttttaccacttgtgaattcaattgtgatgaatgaaaaccaaacttcatatttcaattttcataaccactgttgtttgatttcatgccctgtttttattagcactgaaaaatagtggttattcttacctcggggttattgttatgcttaactattatatactctagtttctaccttcttctgatgctgtttttagtactgacataacaatgtttaaattatgcagattgtagataggctacaatggtatattgaaagtggtgatacggtacatgtttgttctgctttgttatgtaaatttggtcatcatgaatgtgcataagtgatgcaacatacaggtttcaatgtgcttgctttttgtgtcatacatctgcataaattctggtgttcgattgtagcgatattgtatcgatgctttatccttgccaagcttagatatccaggttcaaatgaagtaaattagctcgggcagttgtttatttgtactgggagtctgggaagagcctgctggctctcaaaaactaacacggagatatattttcatttattcgtgctaatcttgctctatggattttgatattatgccgagtcatgacaatggataacctcaatgtcctaatttcgatactatgcaaacaattaccctagctgcttagcatagatactaaatgattgcaataatgtaatagtaggatttatgtgtcaccgtctgctcgatctgtcaagtgtttaatgccacttgctttatacccttggattaacctctcaaatcttcatactgtgtttcaagagaagtagatgatggcagattttctattttattgatgtcttgatttgactctttgtaatcgtgcttgcaatgctgttgatctaccaacttaatgctatgtttagttttccatctgatattgattgtaccaatttttttgggttcataataaaaatagaagacctttacacatgatccagatgtgccacttctaacaattcactacacattccttttcctgtctgttttaggttgttgacttttgctgtggctcaaatgattttagcttattattgaaggaaaagcttgaagcttctgaaaaaagttgcttctataaaaattttgatcttattcaaccaaaggtgggggtaatatatgatgttttttttaatattgaacaagttaccatgcatgaaatagatacgttcagtaagatggaaataccggggagattaaaagggtaaaagctacatatatgagggcctagtcatgcacctgataaatatttttgtcacaccctatcctgtgttgaagctgacacaacatacctctttccctagaatgacttcaattttgagagacgagactggatgaccgttcaaccagatgaattgcccacaggatgtcgattggtatactcacaacccagccattcattttatttgttctcacagaaagtctcagttttctctacttgatatttgctatttccctcagatcatgggattgaatcctccgtttgggtttaaagcttctcttgctaatcaattcattaataaagccctcactttcaagcccaagctgatcatactcattgttcctaaggaaactgaaaggtactgtcccactctccatatatacttgtggctgtcattgattgttaacacagctccattttttaatgtctggtaggctggacaggaaatacccaccatatgagctaatatgggaggattctcatcagcttgcaggaaaggtacgatagtactctccttggtacagttgcatgttatccttgacatggtgttgcaaaattccgttctgactgtttctttggaaaactgtagtcgttctatttgcctgggtcgcttgatgctgataacaagattatggaacaatggaatatgtcaccacctcctctttctctatggagccgtagtgattgggctcggaaacacaaggaaatagctaaaacaatggggcacatcagtaaaaatgtgtggtgcttagatgatactcaaaggtctgttgtaaacacagggcatgcacaaatggctaatgagggggatgatgaccttgacaacaaagaaagacaagaagaggcaccactaaatgcctctgttatagatcagttgttgtctgacacataccatgatcctactagctcgccaggggactactggacagataccaatggaagatcacggcagccttgcaactacgagggaagaaatgatccaacccatgaatatcatgcaggcatgggttgtggatctgacatgagcatttcatcatctgacaagagcgattgtgaaaaacaaaccgaaactatgtcaaactcagagcatgggcatactggttcagaagcccacgatcatgttggaagtgcacctgtggaacaaccaactggttttgcggattgtgatgaggtgacatcagctggcattgagtaccatagcctggaaaattcaccactcacagagagacctgcagatgcagctggagttcaatacaagatgctggaagacacaccacctcctctggatgaactcgtacctggcttttctgggcagccgatcgtttcacttcctggaggaggcaggctttcagctgggttgcaatatcaaaggctggaagacacactgtccagagggacacctgaagctggtgctggttgcagacagctggaagattcactacctgcaccccctgctgcttctgaggtcgatgcagtggttgcaaaatatctgccacagacaacgagtgatctccctgcattaccgttcgttcctgctccaagaattcccttccctggactccagttcgccccaagaaatgacttgtggcaaggatggtacccacctccagaatttctgtccagaggcatggaccatccgcctttcatgcacggctcctctggttggctcgacgactagaggagtgagacattaacccaagccctagtaaagattactgacagccgctgttagcaaagaccacttgtgcagttgtgcttcaacctggcgaggaaggtgaaaaggtgaaaacaccagacttggttcttctcttgtcacgagccaccgtgtagagtctgtagagtacagctacttgtgctgtgcctcggcctatcttttcaaggtgcgagcttgttttgtcctacggcctgcttttagaatacgctgaggctacatgctactaccaattttctggacaggaaacttccaaaactctccttgccaatccacgcctgttgatgtactaggacgtattttgcctctttccttgttggttggttggttggttgcactc</dnaseqindica>

External Link(s)

NCBI Gene:Os08g0502000, RefSeq:Os08g0502000